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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit 669dd4d406e86aee7d83e7420dced981c180d805
author iuc
date Sun, 11 Feb 2024 11:30:13 +0000
parents 1dd7adc21b6d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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1 <!doctype html>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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2 <html lang="en">
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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3 <head>
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4 <meta charset="utf-8" />
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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5 <title>ParsEval Summary</title>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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6 <link rel="stylesheet" type="text/css" href="parseval.css" />
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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7 <script type="text/javascript" language="javascript" src="vendor/jquery.js"></script>
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8 <script type="text/javascript" language="javascript" src="vendor/jquery.dataTables.js"></script>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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9 <script type="text/javascript">
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10 $(document).ready(function() {
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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11 $('#seqlist').dataTable( {
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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12 "sScrollY": "400px",
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13 "bPaginate": false,
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14 "bScrollCollapse": true,
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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15 "bSort": false,
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16 "bFilter": false,
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17 "bInfo": false
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18 });
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19 } );
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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20 </script>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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21 </head>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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22 <body>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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23 <div id="content">
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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24 <h1>ParsEval Summary</h1>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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25 <pre class="command">
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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26 Started: 03 Jan 2021, 02:54PM
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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27 Reference annotations: /tmp/tmpok6hen4l/files/7/2/c/dataset_72c6fa9a-e400-4213-a1ef-ac6fc6ab18e7.dat
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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28 Prediction annotations: /tmp/tmpok6hen4l/files/d/2/0/dataset_d20b7bb7-e832-4eb2-917e-7b76fdb1a0cb.dat
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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29 Executing command: parseval --delta 0 --maxtrans 32 -w -f html -o /tmp/tmpok6hen4l/job_working_directory/000/43/working/dataset_63abed3a-aaab-41d9-b66b-4030368d9362_files /tmp/tmpok6hen4l/files/7/2/c/dataset_72c6fa9a-e400-4213-a1ef-ac6fc6ab18e7.dat /tmp/tmpok6hen4l/files/d/2/0/dataset_d20b7bb7-e832-4eb2-917e-7b76fdb1a0cb.dat </pre>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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30
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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31 <h2>Sequences compared</h2>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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32 <p class="indent">Click on a sequence ID below to see comparison results for individual loci.</p>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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33 <table id="seqlist" class="indent">
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34 <thead>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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35 <tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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36 <th>Sequence</th>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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37 <th>Refr genes</th>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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38 <th>Pred genes</th>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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39 <th>Loci</th>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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40 </tr>
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41 </thead>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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42 <tbody>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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43 <tr><td><a href="Chr1/index.html">Chr1</a></td><td>4</td><td>4</td><td>4</td></tr>
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44 </tbody>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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45 </table>
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46
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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47 <h2>Gene loci <span class="tooltip">[?]<span class="tooltip_text">If a gene annotation overlaps with another gene annotation, those annotations are associated with the same gene locus. See <a target="_blank" href="http://aegean.readthedocs.io/en/latest/loci.html">this page</a> for a formal definition of a locus annotation.</span></span></h2>
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48 <table class="table_normal">
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49 <tr><td>shared</td><td>4</td></tr>
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50 <tr><td>unique to reference</td><td>0</td></tr>
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51 <tr><td>unique to prediction</td><td>0</td></tr>
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52 <tr><th class="right-align">Total</th><td>4</td></tr>
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53 </table>
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54
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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55 <h2>Reference annotations</h2>
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56 <table class="table_normal">
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57 <tr><td>genes</td><td>4</td></tr>
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58 <tr class="cell_small"><td class="cell_indent">average per locus</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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59 <tr><td>transcripts</td><td>5</td></tr>
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60 <tr class="cell_small"><td class="cell_indent">average per locus</td><td>1.250</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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61 <tr class="cell_small"><td class="cell_indent">average per gene</td><td>1.250</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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62 </table>
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63
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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64 <h2>Prediction annotations</h2>
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65 <table class="table_normal">
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66 <tr><td>genes</td><td>4</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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67 <tr class="cell_small"><td class="cell_indent">average per locus</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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68 <tr><td>transcripts</td><td>5</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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69 <tr class="cell_small"><td class="cell_indent">average per locus</td><td>1.250</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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70 <tr class="cell_small"><td class="cell_indent">average per gene</td><td>1.250</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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71 </table>
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72
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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73 <h2>Comparisons</h2>
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74 <table class="comparisons">
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75 <tr><th>Total comparisons</th><th>5</th></tr>
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76 <tr><td><a href="perfectmatches.html">(+)</a> perfect matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Prediction transcripts (exons, coding sequences, and UTRs) line up perfectly with reference transcripts.</span></span></td><td>5 (100.0%)</tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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77 <tr class="cell_small"><td class="cell_indent">average length</td><td>3607.40 bp</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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78 <tr class="cell_small"><td class="cell_indent">average # refr exons</td><td>7.60</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
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79 <tr class="cell_small"><td class="cell_indent">average # pred exons</td><td>7.60</td></tr>
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80 <tr class="cell_small"><td class="cell_indent">average refr CDS length</td><td>449.40 aa</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
81 <tr class="cell_small"><td class="cell_indent">average pred CDS length</td><td>449.40 aa</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
82 <tr><td>(+) perfect matches with mislabeled UTRs <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">5'/3' orientation of UTRs is reversed between reference and prediction, but a perfect match in all other aspects.</span></span></td><td>0 (0.0%)</tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
83 <tr><td>(+) CDS structure matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Not a perfect match, but prediction coding sequence(s) line up perfectly with reference coding sequence(s).</span></span></td><td>0 (0.0%)</tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
84 <tr><td>(+) exon structure matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Not a perfect match or CDS match, but prediction exon structure is identical to reference exon structure.</span></span></td><td>0 (0.0%)</tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
85 <tr><td>(+) UTR structure matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Not a perfect match, CDS match, or exon structure match, but prediction UTRs line up perfectly with reference UTRs.</span></span></td><td>0 (0.0%)</tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
86 <tr><td>(+) non-matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Differences in CDS, exon, and UTR structure.</span></span></td><td>0 (0.0%)</tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
87 </table>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
88
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
89 <h3>CDS structure comparison</h3>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
90 <table class="table_normal table_extra_indent">
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
91 <tr><td>reference CDS segments</td><td>35</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
92 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>35 (100.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
93 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
94 <tr><td>prediction CDS segments</td><td>35</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
95 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>35 (100.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
96 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
97 <tr><td>Sensitivity</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
98 <tr><td>Specificity</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
99 <tr><td>F1 score</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
100 <tr><td>Annotation edit distance</td><td>0.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
101 </table>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
102
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
103 <h3>Exon structure comparison</h3>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
104 <table class="table_normal table_extra_indent">
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
105 <tr><td>reference exons</td><td>38</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
106 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>38 (100.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
107 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
108 <tr><td>prediction exons</td><td>38</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
109 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>38 (100.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
110 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
111 <tr><td>Sensitivity</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
112 <tr><td>Specificity</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
113 <tr><td>F1 score</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
114 <tr><td>Annotation edit distance</td><td>0.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
115 </table>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
116
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
117 <h3>UTR structure comparison</h3>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
118 <table class="table_normal table_extra_indent">
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
119 <tr><td>reference UTR segments</td><td>12</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
120 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>12 (100.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
121 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
122 <tr><td>prediction UTR segments</td><td>12</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
123 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>12 (100.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
124 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
125 <tr><td>Sensitivity</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
126 <tr><td>Specificity</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
127 <tr><td>F1 score</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
128 <tr><td>Annotation edit distance</td><td>0.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
129 </table>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
130
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
131 <h3>Nucleotide-level comparison</h3>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
132 <table class="table_wide table_extra_indent">
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
133 <tr><th>&nbsp;</th><th>CDS</th><th>UTRs</th><th>Overall</th></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
134 <tr><th class="left-align">matching coefficient</th><td>1.000</td><td>1.000</td><td>1.000</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
135 <tr><th class="left-align">correlation coefficient</th><td>1.000</td><td>1.000</td><td>--</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
136 <tr><th class="left-align">sensitivity</th><td>1.000</td><td>1.000</td><td>--</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
137 <tr><th class="left-align">specificity</th><td>1.000</td><td>1.000</td><td>--</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
138 <tr><th class="left-align">F1 score</th><td>1.000</td><td>1.000</td><td>--</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
139 <tr><th class="left-align">annotation edit distance</th><td>0.000</td><td>0.000</td><td>--</td></tr>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
140 </table>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
141
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
142 <p class="footer">
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
143 Generated by <a href="https://github.com/standage/AEGeAn/releases/tag/v0.16.0">AEGeAn v0.16.0 (stable )</a>.<br />
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
144 Copyright © 2016 <a href="http://aegean.readthedocs.io/en/latest/contrib.html">AEGeAn authors</a>.<br />
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
145 See <a href="LICENSE">LICENSE</a> for details. </p>
1dd7adc21b6d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
146 </div> </body> </html>