ParsEval Summary

Started:                03 Jan 2021, 02:54PM
Reference annotations:  /tmp/tmpok6hen4l/files/7/2/c/dataset_72c6fa9a-e400-4213-a1ef-ac6fc6ab18e7.dat
Prediction annotations: /tmp/tmpok6hen4l/files/d/2/0/dataset_d20b7bb7-e832-4eb2-917e-7b76fdb1a0cb.dat
Executing command:      parseval --delta 0 --maxtrans 32 -w -f html -o /tmp/tmpok6hen4l/job_working_directory/000/43/working/dataset_63abed3a-aaab-41d9-b66b-4030368d9362_files /tmp/tmpok6hen4l/files/7/2/c/dataset_72c6fa9a-e400-4213-a1ef-ac6fc6ab18e7.dat /tmp/tmpok6hen4l/files/d/2/0/dataset_d20b7bb7-e832-4eb2-917e-7b76fdb1a0cb.dat

Sequences compared

Click on a sequence ID below to see comparison results for individual loci.

Sequence	Refr genes	Pred genes	Loci
Chr1	4	4	4

Gene loci [?]If a gene annotation overlaps with another gene annotation, those annotations are associated with the same gene locus. See this page for a formal definition of a locus annotation.

shared	4
unique to reference	0
unique to prediction	0
Total	4

Reference annotations

genes	4
average per locus	1.000
transcripts	5
average per locus	1.250
average per gene	1.250

Prediction annotations

genes	4
average per locus	1.000
transcripts	5
average per locus	1.250
average per gene	1.250

Comparisons

Total comparisons	5
(+) perfect matches [?]Prediction transcripts (exons, coding sequences, and UTRs) line up perfectly with reference transcripts.	5 (100.0%)
average length	3607.40 bp
average # refr exons	7.60
average # pred exons	7.60
average refr CDS length	449.40 aa
average pred CDS length	449.40 aa
(+) perfect matches with mislabeled UTRs [?]5'/3' orientation of UTRs is reversed between reference and prediction, but a perfect match in all other aspects.	0 (0.0%)
(+) CDS structure matches [?]Not a perfect match, but prediction coding sequence(s) line up perfectly with reference coding sequence(s).	0 (0.0%)
(+) exon structure matches [?]Not a perfect match or CDS match, but prediction exon structure is identical to reference exon structure.	0 (0.0%)
(+) UTR structure matches [?]Not a perfect match, CDS match, or exon structure match, but prediction UTRs line up perfectly with reference UTRs.	0 (0.0%)
(+) non-matches [?]Differences in CDS, exon, and UTR structure.	0 (0.0%)

CDS structure comparison

reference CDS segments	35
match prediction	35 (100.0%)
don't match prediction	0 (0.0%)
prediction CDS segments	35
match prediction	35 (100.0%)
don't match prediction	0 (0.0%)
Sensitivity	1.000
Specificity	1.000
F1 score	1.000
Annotation edit distance	0.000

Exon structure comparison

reference exons	38
match prediction	38 (100.0%)
don't match prediction	0 (0.0%)
prediction exons	38
match prediction	38 (100.0%)
don't match prediction	0 (0.0%)
Sensitivity	1.000
Specificity	1.000
F1 score	1.000
Annotation edit distance	0.000

UTR structure comparison

reference UTR segments	12
match prediction	12 (100.0%)
don't match prediction	0 (0.0%)
prediction UTR segments	12
match prediction	12 (100.0%)
don't match prediction	0 (0.0%)
Sensitivity	1.000
Specificity	1.000
F1 score	1.000
Annotation edit distance	0.000

Nucleotide-level comparison

	CDS	UTRs	Overall
matching coefficient	1.000	1.000	1.000
correlation coefficient	1.000	1.000	--
sensitivity	1.000	1.000	--
specificity	1.000	1.000	--
F1 score	1.000	1.000	--
annotation edit distance	0.000	0.000	--