diff test-data/TAIR9_GFF3_genes.gff @ 0:c4ac24510b55 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
author iuc
date Sun, 03 Jan 2021 14:58:58 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TAIR9_GFF3_genes.gff	Sun Jan 03 14:58:58 2021 +0000
@@ -0,0 +1,100 @@
+Chr1	TAIR9	chromosome	1	30427671	.	.	.	ID=Chr1;Name=Chr1
+Chr1	TAIR9	gene	3631	5899	.	+	.	ID=AT1G01010;Note=protein_coding_gene;Name=AT1G01010
+Chr1	TAIR9	mRNA	3631	5899	.	+	.	ID=AT1G01010.1;Parent=AT1G01010;Name=AT1G01010.1;Index=1
+Chr1	TAIR9	protein	3760	5630	.	+	.	ID=AT1G01010.1-Protein;Name=AT1G01010.1;Derives_from=AT1G01010.1
+Chr1	TAIR9	exon	3631	3913	.	+	.	Parent=AT1G01010.1
+Chr1	TAIR9	five_prime_UTR	3631	3759	.	+	.	Parent=AT1G01010.1
+Chr1	TAIR9	CDS	3760	3913	.	+	0	Parent=AT1G01010.1,AT1G01010.1-Protein;
+Chr1	TAIR9	exon	3996	4276	.	+	.	Parent=AT1G01010.1
+Chr1	TAIR9	CDS	3996	4276	.	+	2	Parent=AT1G01010.1,AT1G01010.1-Protein;
+Chr1	TAIR9	exon	4486	4605	.	+	.	Parent=AT1G01010.1
+Chr1	TAIR9	CDS	4486	4605	.	+	0	Parent=AT1G01010.1,AT1G01010.1-Protein;
+Chr1	TAIR9	exon	4706	5095	.	+	.	Parent=AT1G01010.1
+Chr1	TAIR9	CDS	4706	5095	.	+	0	Parent=AT1G01010.1,AT1G01010.1-Protein;
+Chr1	TAIR9	exon	5174	5326	.	+	.	Parent=AT1G01010.1
+Chr1	TAIR9	CDS	5174	5326	.	+	0	Parent=AT1G01010.1,AT1G01010.1-Protein;
+Chr1	TAIR9	exon	5439	5899	.	+	.	Parent=AT1G01010.1
+Chr1	TAIR9	CDS	5439	5630	.	+	0	Parent=AT1G01010.1,AT1G01010.1-Protein;
+Chr1	TAIR9	three_prime_UTR	5631	5899	.	+	.	Parent=AT1G01010.1
+Chr1	TAIR9	gene	5928	8737	.	-	.	ID=AT1G01020;Note=protein_coding_gene;Name=AT1G01020
+Chr1	TAIR9	mRNA	5928	8737	.	-	.	ID=AT1G01020.1;Parent=AT1G01020;Name=AT1G01020.1;Index=1
+Chr1	TAIR9	protein	6915	8666	.	-	.	ID=AT1G01020.1-Protein;Name=AT1G01020.1;Derives_from=AT1G01020.1
+Chr1	TAIR9	five_prime_UTR	8667	8737	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	CDS	8571	8666	.	-	0	Parent=AT1G01020.1,AT1G01020.1-Protein;
+Chr1	TAIR9	exon	8571	8737	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	CDS	8417	8464	.	-	0	Parent=AT1G01020.1,AT1G01020.1-Protein;
+Chr1	TAIR9	exon	8417	8464	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	CDS	8236	8325	.	-	0	Parent=AT1G01020.1,AT1G01020.1-Protein;
+Chr1	TAIR9	exon	8236	8325	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	CDS	7942	7987	.	-	0	Parent=AT1G01020.1,AT1G01020.1-Protein;
+Chr1	TAIR9	exon	7942	7987	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	CDS	7762	7835	.	-	2	Parent=AT1G01020.1,AT1G01020.1-Protein;
+Chr1	TAIR9	exon	7762	7835	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	CDS	7564	7649	.	-	0	Parent=AT1G01020.1,AT1G01020.1-Protein;
+Chr1	TAIR9	exon	7564	7649	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	CDS	7384	7450	.	-	1	Parent=AT1G01020.1,AT1G01020.1-Protein;
+Chr1	TAIR9	exon	7384	7450	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	CDS	7157	7232	.	-	0	Parent=AT1G01020.1,AT1G01020.1-Protein;
+Chr1	TAIR9	exon	7157	7232	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	CDS	6915	7069	.	-	2	Parent=AT1G01020.1,AT1G01020.1-Protein;
+Chr1	TAIR9	three_prime_UTR	6437	6914	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	exon	6437	7069	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	three_prime_UTR	5928	6263	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	exon	5928	6263	.	-	.	Parent=AT1G01020.1
+Chr1	TAIR9	mRNA	6790	8737	.	-	.	ID=AT1G01020.2;Parent=AT1G01020;Name=AT1G01020.2;Index=1
+Chr1	TAIR9	protein	7315	8666	.	-	.	ID=AT1G01020.2-Protein;Name=AT1G01020.2;Derives_from=AT1G01020.2
+Chr1	TAIR9	five_prime_UTR	8667	8737	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	CDS	8571	8666	.	-	0	Parent=AT1G01020.2,AT1G01020.2-Protein;
+Chr1	TAIR9	exon	8571	8737	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	CDS	8417	8464	.	-	0	Parent=AT1G01020.2,AT1G01020.2-Protein;
+Chr1	TAIR9	exon	8417	8464	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	CDS	8236	8325	.	-	0	Parent=AT1G01020.2,AT1G01020.2-Protein;
+Chr1	TAIR9	exon	8236	8325	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	CDS	7942	7987	.	-	0	Parent=AT1G01020.2,AT1G01020.2-Protein;
+Chr1	TAIR9	exon	7942	7987	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	CDS	7762	7835	.	-	2	Parent=AT1G01020.2,AT1G01020.2-Protein;
+Chr1	TAIR9	exon	7762	7835	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	CDS	7564	7649	.	-	0	Parent=AT1G01020.2,AT1G01020.2-Protein;
+Chr1	TAIR9	exon	7564	7649	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	CDS	7315	7450	.	-	1	Parent=AT1G01020.2,AT1G01020.2-Protein;
+Chr1	TAIR9	three_prime_UTR	7157	7314	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	exon	7157	7450	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	three_prime_UTR	6790	7069	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	exon	6790	7069	.	-	.	Parent=AT1G01020.2
+Chr1	TAIR9	gene	11649	13714	.	-	.	ID=AT1G01030;Note=protein_coding_gene;Name=AT1G01030
+Chr1	TAIR9	mRNA	11649	13714	.	-	.	ID=AT1G01030.1;Parent=AT1G01030;Name=AT1G01030.1;Index=1
+Chr1	TAIR9	protein	11864	12940	.	-	.	ID=AT1G01030.1-Protein;Name=AT1G01030.1;Derives_from=AT1G01030.1
+Chr1	TAIR9	five_prime_UTR	13335	13714	.	-	.	Parent=AT1G01030.1
+Chr1	TAIR9	exon	13335	13714	.	-	.	Parent=AT1G01030.1
+Chr1	TAIR9	five_prime_UTR	12941	13173	.	-	.	Parent=AT1G01030.1
+Chr1	TAIR9	CDS	11864	12940	.	-	0	Parent=AT1G01030.1,AT1G01030.1-Protein;
+Chr1	TAIR9	three_prime_UTR	11649	11863	.	-	.	Parent=AT1G01030.1
+Chr1	TAIR9	exon	11649	13173	.	-	.	Parent=AT1G01030.1
+Chr1	TAIR9	gene	23146	31227	.	+	.	ID=AT1G01040;Note=protein_coding_gene;Name=AT1G01040
+Chr1	TAIR9	mRNA	23146	31227	.	+	.	ID=AT1G01040.1;Parent=AT1G01040;Name=AT1G01040.1;Index=1
+Chr1	TAIR9	protein	23519	31079	.	+	.	ID=AT1G01040.1-Protein;Name=AT1G01040.1;Derives_from=AT1G01040.1
+Chr1	TAIR9	exon	23146	24451	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	five_prime_UTR	23146	23518	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	23519	24451	.	+	0	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	24542	24655	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	24542	24655	.	+	0	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	24752	24962	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	24752	24962	.	+	0	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	25041	25435	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	25041	25435	.	+	2	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	25524	25743	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	25524	25743	.	+	0	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	25825	25997	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	25825	25997	.	+	2	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	26081	26203	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	26081	26203	.	+	0	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	26292	26452	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	26292	26452	.	+	0	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	26543	26776	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	26543	26776	.	+	1	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	26862	27012	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	26862	27012	.	+	1	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	27099	27281	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	27099	27281	.	+	0	Parent=AT1G01040.1,AT1G01040.1-Protein;
+Chr1	TAIR9	exon	27372	27533	.	+	.	Parent=AT1G01040.1
+Chr1	TAIR9	CDS	27372	27533	.	+	0	Parent=AT1G01040.1,AT1G01040.1-Protein;