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view test-data/parseval_output_test3.txt @ 0:c4ac24510b55 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
author iuc
date Sun, 03 Jan 2021 14:58:58 +0000
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|-------------------------------------------------
|---- Locus: seqid=Chr1 range=3621-5913
|-------------------------------------------------
|
|  reference genes:
|    AT1G01010
|
|  prediction genes:
|    AT1G01010
|
|----------
     |
     |--------------------------
     |---- Begin comparison ----
     |--------------------------
     |
     |  reference transcripts:
     |    AT1G01010.1
     |  prediction transcripts:
     |    AT1G01010.1
     |
     | reference GFF3:
##gff-version 3
Chr1	TAIR9	mRNA	3631	5899	.	+	.	ID=AT1G01010.1;Name=AT1G01010.1;index=1
Chr1	TAIR9	five_prime_UTR	3631	3759	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	exon	3631	3913	.	+	.	Parent=AT1G01010.1
Chr1	.	start_codon	3760	3762	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	CDS	3760	3913	.	+	0	ID=CDS0;Parent=AT1G01010.1
Chr1	.	intron	3914	3995	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	exon	3996	4276	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	CDS	3996	4276	.	+	2	ID=CDS0;Parent=AT1G01010.1
Chr1	.	intron	4277	4485	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	exon	4486	4605	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	CDS	4486	4605	.	+	0	ID=CDS0;Parent=AT1G01010.1
Chr1	.	intron	4606	4705	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	exon	4706	5095	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	CDS	4706	5095	.	+	0	ID=CDS0;Parent=AT1G01010.1
Chr1	.	intron	5096	5173	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	exon	5174	5326	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	CDS	5174	5326	.	+	0	ID=CDS0;Parent=AT1G01010.1
Chr1	.	intron	5327	5438	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	CDS	5439	5630	.	+	0	ID=CDS0;Parent=AT1G01010.1
Chr1	TAIR9	exon	5439	5899	.	+	.	Parent=AT1G01010.1
Chr1	.	stop_codon	5628	5630	.	+	.	Parent=AT1G01010.1
Chr1	TAIR9	three_prime_UTR	5631	5899	.	+	.	Parent=AT1G01010.1
###
     | prediction GFF3:
##gff-version 3
Chr1	TAIR10	mRNA	3631	5899	.	+	.	ID=AT1G01010.1;Name=AT1G01010.1;index=1
Chr1	TAIR10	five_prime_UTR	3631	3759	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	exon	3631	3913	.	+	.	Parent=AT1G01010.1
Chr1	.	start_codon	3760	3762	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	CDS	3760	3913	.	+	0	ID=CDS1;Parent=AT1G01010.1
Chr1	.	intron	3914	3995	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	exon	3996	4276	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	CDS	3996	4276	.	+	2	ID=CDS1;Parent=AT1G01010.1
Chr1	.	intron	4277	4485	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	exon	4486	4605	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	CDS	4486	4605	.	+	0	ID=CDS1;Parent=AT1G01010.1
Chr1	.	intron	4606	4705	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	exon	4706	5095	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	CDS	4706	5095	.	+	0	ID=CDS1;Parent=AT1G01010.1
Chr1	.	intron	5096	5173	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	exon	5174	5326	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	CDS	5174	5326	.	+	0	ID=CDS1;Parent=AT1G01010.1
Chr1	.	intron	5327	5438	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	CDS	5439	5630	.	+	0	ID=CDS1;Parent=AT1G01010.1
Chr1	TAIR10	exon	5439	5899	.	+	.	Parent=AT1G01010.1
Chr1	.	stop_codon	5628	5630	.	+	.	Parent=AT1G01010.1
Chr1	TAIR10	three_prime_UTR	5631	5899	.	+	.	Parent=AT1G01010.1
###
 |
     |  CDS structure comparison
     |    6 reference  CDS segments
     |    6 prediction CDS segments
     |    CDS structures match perfectly!
     |
     |  Exon structure comparison
     |    6 reference  exons
     |    6 prediction exons
     |    Exon structures match perfectly!
     |
     |  UTR structure comparison
     |    2 reference  UTR segments
     |    2 prediction UTR segments
     |    UTR structures match perfectly!
     |
     |    Gene structures match perfectly!
     |
     |
     |--------------------------
     |----- End comparison -----
     |--------------------------

|-------------------------------------------------
|---- Locus: seqid=Chr1 range=5914-8747
|-------------------------------------------------
|
|  reference genes:
|    AT1G01020
|
|  prediction genes:
|    AT1G01020
|
|----------
     |
     |--------------------------
     |---- Begin comparison ----
     |--------------------------
     |
     |  reference transcripts:
     |    AT1G01020.1
     |  prediction transcripts:
     |    AT1G01020.1
     |
     | reference GFF3:
##gff-version 3
Chr1	TAIR9	mRNA	5928	8737	.	-	.	ID=AT1G01020.1;Name=AT1G01020.1;index=1
Chr1	TAIR9	three_prime_UTR	5928	6263	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	exon	5928	6263	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	6264	6436	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	three_prime_UTR	6437	6914	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	exon	6437	7069	.	-	.	Parent=AT1G01020.1
Chr1	.	stop_codon	6915	6917	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	CDS	6915	7069	.	-	2	ID=CDS2;Parent=AT1G01020.1
Chr1	.	intron	7070	7156	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	CDS	7157	7232	.	-	0	ID=CDS2;Parent=AT1G01020.1
Chr1	TAIR9	exon	7157	7232	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7233	7383	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	CDS	7384	7450	.	-	1	ID=CDS2;Parent=AT1G01020.1
Chr1	TAIR9	exon	7384	7450	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7451	7563	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	CDS	7564	7649	.	-	0	ID=CDS2;Parent=AT1G01020.1
Chr1	TAIR9	exon	7564	7649	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7650	7761	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	CDS	7762	7835	.	-	2	ID=CDS2;Parent=AT1G01020.1
Chr1	TAIR9	exon	7762	7835	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7836	7941	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	CDS	7942	7987	.	-	0	ID=CDS2;Parent=AT1G01020.1
Chr1	TAIR9	exon	7942	7987	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7988	8235	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	CDS	8236	8325	.	-	0	ID=CDS2;Parent=AT1G01020.1
Chr1	TAIR9	exon	8236	8325	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	8326	8416	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	CDS	8417	8464	.	-	0	ID=CDS2;Parent=AT1G01020.1
Chr1	TAIR9	exon	8417	8464	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	8465	8570	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	CDS	8571	8666	.	-	0	ID=CDS2;Parent=AT1G01020.1
Chr1	TAIR9	exon	8571	8737	.	-	.	Parent=AT1G01020.1
Chr1	.	start_codon	8664	8666	.	-	.	Parent=AT1G01020.1
Chr1	TAIR9	five_prime_UTR	8667	8737	.	-	.	Parent=AT1G01020.1
###
     | prediction GFF3:
##gff-version 3
Chr1	TAIR10	mRNA	5928	8737	.	-	.	ID=AT1G01020.1;Name=AT1G01020.1;index=1
Chr1	TAIR10	three_prime_UTR	5928	6263	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	exon	5928	6263	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	6264	6436	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	three_prime_UTR	6437	6914	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	exon	6437	7069	.	-	.	Parent=AT1G01020.1
Chr1	.	stop_codon	6915	6917	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	CDS	6915	7069	.	-	2	ID=CDS4;Parent=AT1G01020.1
Chr1	.	intron	7070	7156	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	CDS	7157	7232	.	-	0	ID=CDS4;Parent=AT1G01020.1
Chr1	TAIR10	exon	7157	7232	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7233	7383	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	CDS	7384	7450	.	-	1	ID=CDS4;Parent=AT1G01020.1
Chr1	TAIR10	exon	7384	7450	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7451	7563	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	CDS	7564	7649	.	-	0	ID=CDS4;Parent=AT1G01020.1
Chr1	TAIR10	exon	7564	7649	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7650	7761	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	CDS	7762	7835	.	-	2	ID=CDS4;Parent=AT1G01020.1
Chr1	TAIR10	exon	7762	7835	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7836	7941	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	CDS	7942	7987	.	-	0	ID=CDS4;Parent=AT1G01020.1
Chr1	TAIR10	exon	7942	7987	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	7988	8235	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	CDS	8236	8325	.	-	0	ID=CDS4;Parent=AT1G01020.1
Chr1	TAIR10	exon	8236	8325	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	8326	8416	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	CDS	8417	8464	.	-	0	ID=CDS4;Parent=AT1G01020.1
Chr1	TAIR10	exon	8417	8464	.	-	.	Parent=AT1G01020.1
Chr1	.	intron	8465	8570	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	CDS	8571	8666	.	-	0	ID=CDS4;Parent=AT1G01020.1
Chr1	TAIR10	exon	8571	8737	.	-	.	Parent=AT1G01020.1
Chr1	.	start_codon	8664	8666	.	-	.	Parent=AT1G01020.1
Chr1	TAIR10	five_prime_UTR	8667	8737	.	-	.	Parent=AT1G01020.1
###
 |
     |  CDS structure comparison
     |    9 reference  CDS segments
     |    9 prediction CDS segments
     |    CDS structures match perfectly!
     |
     |  Exon structure comparison
     |    10 reference  exons
     |    10 prediction exons
     |    Exon structures match perfectly!
     |
     |  UTR structure comparison
     |    3 reference  UTR segments
     |    3 prediction UTR segments
     |    UTR structures match perfectly!
     |
     |    Gene structures match perfectly!
     |
     |
     |--------------------------
     |----- End comparison -----
     |--------------------------
     |
     |--------------------------
     |---- Begin comparison ----
     |--------------------------
     |
     |  reference transcripts:
     |    AT1G01020.2
     |  prediction transcripts:
     |    AT1G01020.2
     |
     | reference GFF3:
##gff-version 3
Chr1	TAIR9	mRNA	6790	8737	.	-	.	ID=AT1G01020.2;Name=AT1G01020.2;index=1
Chr1	TAIR9	three_prime_UTR	6790	7069	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	exon	6790	7069	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	three_prime_UTR	7157	7314	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	exon	7157	7450	.	-	.	Parent=AT1G01020.2
Chr1	.	stop_codon	7315	7317	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	CDS	7315	7450	.	-	1	ID=CDS3;Parent=AT1G01020.2
Chr1	TAIR9	CDS	7564	7649	.	-	0	ID=CDS3;Parent=AT1G01020.2
Chr1	TAIR9	exon	7564	7649	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	CDS	7762	7835	.	-	2	ID=CDS3;Parent=AT1G01020.2
Chr1	TAIR9	exon	7762	7835	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	CDS	7942	7987	.	-	0	ID=CDS3;Parent=AT1G01020.2
Chr1	TAIR9	exon	7942	7987	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	CDS	8236	8325	.	-	0	ID=CDS3;Parent=AT1G01020.2
Chr1	TAIR9	exon	8236	8325	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	CDS	8417	8464	.	-	0	ID=CDS3;Parent=AT1G01020.2
Chr1	TAIR9	exon	8417	8464	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	CDS	8571	8666	.	-	0	ID=CDS3;Parent=AT1G01020.2
Chr1	TAIR9	exon	8571	8737	.	-	.	Parent=AT1G01020.2
Chr1	.	start_codon	8664	8666	.	-	.	Parent=AT1G01020.2
Chr1	TAIR9	five_prime_UTR	8667	8737	.	-	.	Parent=AT1G01020.2
###
     | prediction GFF3:
##gff-version 3
Chr1	TAIR10	mRNA	6790	8737	.	-	.	ID=AT1G01020.2;Name=AT1G01020.2;index=1
Chr1	TAIR10	three_prime_UTR	6790	7069	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	exon	6790	7069	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	three_prime_UTR	7157	7314	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	exon	7157	7450	.	-	.	Parent=AT1G01020.2
Chr1	.	stop_codon	7315	7317	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	CDS	7315	7450	.	-	1	ID=CDS5;Parent=AT1G01020.2
Chr1	TAIR10	CDS	7564	7649	.	-	0	ID=CDS5;Parent=AT1G01020.2
Chr1	TAIR10	exon	7564	7649	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	CDS	7762	7835	.	-	2	ID=CDS5;Parent=AT1G01020.2
Chr1	TAIR10	exon	7762	7835	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	CDS	7942	7987	.	-	0	ID=CDS5;Parent=AT1G01020.2
Chr1	TAIR10	exon	7942	7987	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	CDS	8236	8325	.	-	0	ID=CDS5;Parent=AT1G01020.2
Chr1	TAIR10	exon	8236	8325	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	CDS	8417	8464	.	-	0	ID=CDS5;Parent=AT1G01020.2
Chr1	TAIR10	exon	8417	8464	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	CDS	8571	8666	.	-	0	ID=CDS5;Parent=AT1G01020.2
Chr1	TAIR10	exon	8571	8737	.	-	.	Parent=AT1G01020.2
Chr1	.	start_codon	8664	8666	.	-	.	Parent=AT1G01020.2
Chr1	TAIR10	five_prime_UTR	8667	8737	.	-	.	Parent=AT1G01020.2
###
 |
     |  CDS structure comparison
     |    7 reference  CDS segments
     |    7 prediction CDS segments
     |    CDS structures match perfectly!
     |
     |  Exon structure comparison
     |    8 reference  exons
     |    8 prediction exons
     |    Exon structures match perfectly!
     |
     |  UTR structure comparison
     |    3 reference  UTR segments
     |    3 prediction UTR segments
     |    UTR structures match perfectly!
     |
     |    Gene structures match perfectly!
     |
     |
     |--------------------------
     |----- End comparison -----
     |--------------------------

|-------------------------------------------------
|---- Locus: seqid=Chr1 range=11639-13724
|-------------------------------------------------
|
|  reference genes:
|    AT1G01030
|
|  prediction genes:
|    AT1G01030
|
|----------
     |
     |--------------------------
     |---- Begin comparison ----
     |--------------------------
     |
     |  reference transcripts:
     |    AT1G01030.1
     |  prediction transcripts:
     |    AT1G01030.1
     |
     | reference GFF3:
##gff-version 3
Chr1	TAIR9	mRNA	11649	13714	.	-	.	ID=AT1G01030.1;Name=AT1G01030.1;index=1
Chr1	TAIR9	three_prime_UTR	11649	11863	.	-	.	Parent=AT1G01030.1
Chr1	TAIR9	exon	11649	13173	.	-	.	Parent=AT1G01030.1
Chr1	.	stop_codon	11864	11866	.	-	.	Parent=AT1G01030.1
Chr1	TAIR9	CDS	11864	12940	.	-	0	Parent=AT1G01030.1
Chr1	.	start_codon	12938	12940	.	-	.	Parent=AT1G01030.1
Chr1	TAIR9	five_prime_UTR	12941	13173	.	-	.	Parent=AT1G01030.1
Chr1	.	intron	13174	13334	.	-	.	Parent=AT1G01030.1
Chr1	TAIR9	five_prime_UTR	13335	13714	.	-	.	Parent=AT1G01030.1
Chr1	TAIR9	exon	13335	13714	.	-	.	Parent=AT1G01030.1
###
     | prediction GFF3:
##gff-version 3
Chr1	TAIR10	mRNA	11649	13714	.	-	.	ID=AT1G01030.1;Name=AT1G01030.1;index=1
Chr1	TAIR10	three_prime_UTR	11649	11863	.	-	.	Parent=AT1G01030.1
Chr1	TAIR10	exon	11649	13173	.	-	.	Parent=AT1G01030.1
Chr1	.	stop_codon	11864	11866	.	-	.	Parent=AT1G01030.1
Chr1	TAIR10	CDS	11864	12940	.	-	0	Parent=AT1G01030.1
Chr1	.	start_codon	12938	12940	.	-	.	Parent=AT1G01030.1
Chr1	TAIR10	five_prime_UTR	12941	13173	.	-	.	Parent=AT1G01030.1
Chr1	.	intron	13174	13334	.	-	.	Parent=AT1G01030.1
Chr1	TAIR10	five_prime_UTR	13335	13714	.	-	.	Parent=AT1G01030.1
Chr1	TAIR10	exon	13335	13714	.	-	.	Parent=AT1G01030.1
###
 |
     |  CDS structure comparison
     |    1 reference  CDS segments
     |    1 prediction CDS segments
     |    CDS structures match perfectly!
     |
     |  Exon structure comparison
     |    2 reference  exons
     |    2 prediction exons
     |    Exon structures match perfectly!
     |
     |  UTR structure comparison
     |    3 reference  UTR segments
     |    3 prediction UTR segments
     |    UTR structures match perfectly!
     |
     |    Gene structures match perfectly!
     |
     |
     |--------------------------
     |----- End comparison -----
     |--------------------------

|-------------------------------------------------
|---- Locus: seqid=Chr1 range=23136-31237
|-------------------------------------------------
|
|  reference genes:
|    AT1G01040
|
|  prediction genes:
|    AT1G01040
|
|----------
     |
     |--------------------------
     |---- Begin comparison ----
     |--------------------------
     |
     |  reference transcripts:
     |    AT1G01040.1
     |  prediction transcripts:
     |    AT1G01040.1
     |
     | reference GFF3:
##gff-version 3
Chr1	TAIR9	mRNA	23146	31227	.	+	.	ID=AT1G01040.1;Name=AT1G01040.1;index=1
Chr1	TAIR9	five_prime_UTR	23146	23518	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	23146	24451	.	+	.	Parent=AT1G01040.1
Chr1	.	start_codon	23519	23521	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	23519	24451	.	+	0	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	24452	24541	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	24542	24655	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	24542	24655	.	+	0	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	24656	24751	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	24752	24962	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	24752	24962	.	+	0	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	24963	25040	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	25041	25435	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	25041	25435	.	+	2	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	25436	25523	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	25524	25743	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	25524	25743	.	+	0	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	25744	25824	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	25825	25997	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	25825	25997	.	+	2	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	25998	26080	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	26081	26203	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	26081	26203	.	+	0	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	26204	26291	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	26292	26452	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	26292	26452	.	+	0	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	26453	26542	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	26543	26776	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	26543	26776	.	+	1	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	26777	26861	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	26862	27012	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	26862	27012	.	+	1	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	27013	27098	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	27099	27281	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	27099	27281	.	+	0	ID=CDS6;Parent=AT1G01040.1
Chr1	.	intron	27282	27371	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	exon	27372	27533	.	+	.	Parent=AT1G01040.1
Chr1	TAIR9	CDS	27372	27533	.	+	0	ID=CDS6;Parent=AT1G01040.1
Chr1	.	stop_codon	27531	27533	.	+	.	Parent=AT1G01040.1
###
     | prediction GFF3:
##gff-version 3
Chr1	TAIR10	mRNA	23146	31227	.	+	.	ID=AT1G01040.1;Name=AT1G01040.1;index=1
Chr1	TAIR10	five_prime_UTR	23146	23518	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	23146	24451	.	+	.	Parent=AT1G01040.1
Chr1	.	start_codon	23519	23521	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	23519	24451	.	+	0	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	24452	24541	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	24542	24655	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	24542	24655	.	+	0	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	24656	24751	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	24752	24962	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	24752	24962	.	+	0	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	24963	25040	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	25041	25435	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	25041	25435	.	+	2	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	25436	25523	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	25524	25743	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	25524	25743	.	+	0	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	25744	25824	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	25825	25997	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	25825	25997	.	+	2	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	25998	26080	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	26081	26203	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	26081	26203	.	+	0	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	26204	26291	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	26292	26452	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	26292	26452	.	+	0	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	26453	26542	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	26543	26776	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	26543	26776	.	+	1	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	26777	26861	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	26862	27012	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	26862	27012	.	+	1	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	27013	27098	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	27099	27281	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	27099	27281	.	+	0	ID=CDS7;Parent=AT1G01040.1
Chr1	.	intron	27282	27371	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	exon	27372	27533	.	+	.	Parent=AT1G01040.1
Chr1	TAIR10	CDS	27372	27533	.	+	0	ID=CDS7;Parent=AT1G01040.1
Chr1	.	stop_codon	27531	27533	.	+	.	Parent=AT1G01040.1
###
 |
     |  CDS structure comparison
     |    12 reference  CDS segments
     |    12 prediction CDS segments
     |    CDS structures match perfectly!
     |
     |  Exon structure comparison
     |    12 reference  exons
     |    12 prediction exons
     |    Exon structures match perfectly!
     |
     |  UTR structure comparison
     |    1 reference  UTR segments
     |    1 prediction UTR segments
     |    UTR structures match perfectly!
     |
     |    Gene structures match perfectly!
     |
     |
     |--------------------------
     |----- End comparison -----
     |--------------------------

============================================================
========== ParsEval Summary
============================================================

Started:                31 Dec 2020, 08:39PM
Reference annotations:  /tmp/tmpuaspc0eb/files/a/5/5/dataset_a554f401-58a7-425c-88d9-4da452d77344.dat
Prediction annotations: /tmp/tmpuaspc0eb/files/9/5/a/dataset_95aee753-49cb-406a-a66f-13f51ef7a287.dat
Executing command:      parseval -l 10 -t 10 -w -f text -o /tmp/tmpuaspc0eb/files/f/7/e/dataset_f7ec07dd-99dc-47f5-b69e-b01cec68543f.dat /tmp/tmpuaspc0eb/files/a/5/5/dataset_a554f401-58a7-425c-88d9-4da452d77344.dat /tmp/tmpuaspc0eb/files/9/5/a/dataset_95aee753-49cb-406a-a66f-13f51ef7a287.dat 

  Sequences compared
    Chr1

  Gene loci................................4
    shared.................................4
    unique to reference....................0
    unique to prediction...................0

  Reference annotations
    genes..................................4
      average per locus....................1.000
    transcripts............................5
      average per locus....................1.250
      average per gene.....................1.250

  Prediction annotations
    genes..................................4
      average per locus....................1.000
    transcripts............................5
      average per locus....................1.250
      average per gene.....................1.250

  Total comparisons........................5
    perfect matches........................5 (100.0%)
      avg. length..........................3629.80 bp
      avg. # refr exons....................7.60
      avg. # pred exons....................7.60
      avg. refr CDS length.................449.40 aa
      avg. pred CDS length.................449.40 aa
    perfect matches with mislabeled UTRs...0 (0.0%)
    CDS structure matches..................0 (0.0%)
    exon structure matches.................0 (0.0%)
    UTR structure matches..................0 (0.0%)
    non-matches............................0 (0.0%)

  CDS structure comparison
    reference CDS segments.................35
      match prediction.....................35 (100.0%)
      don't match prediction...............0 (0.0%)
    prediction CDS segments................35
      match reference......................35 (100.0%)
      don't match reference................0 (0.0%)
    Sensitivity............................1.000
    Specificity............................1.000
    F1 Score...............................1.000
    Annotation edit distance...............0.000

  Exon structure comparison
    reference exons........................38
      match prediction.....................38 (100.0%)
      don't match prediction...............0 (0.0%)
    prediction exons.......................38
      match reference......................38 (100.0%)
      don't match reference................0 (0.0%)
    Sensitivity............................1.000
    Specificity............................1.000
    F1 Score...............................1.000
    Annotation edit distance...............0.000

  UTR structure comparison
    reference UTR segments.................12
      match prediction.....................12 (100.0%)
      don't match prediction...............0 (0.0%)
    prediction UTR segments................12
      match reference......................12 (100.0%)
      don't match reference................0 (0.0%)
    Sensitivity............................1.000
    Specificity............................1.000
    F1 Score...............................1.000
    Annotation edit distance...............0.000

  Nucleotide-level comparison      CDS          UTRs         Overall   
    Matching coefficient:          1.000        1.000        1.000
    Correlation coefficient:       1.000        1.000        --        
    Sensitivity:                   1.000        1.000        --        
    Specificity:                   1.000        1.000        --        
    F1 Score:                      1.000        1.000        --        
    Annotation edit distance:      0.000        0.000        --