view macros.xml @ 0:f4d0bd4b4d6d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aldex2 commit b99f09cf03f075a6881d192b0f1233233289fa60

<macros>
    <token name="@TOOL_VERSION@">1.26.0</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">21.01</token>
    <xml name="biotools">
        <xrefs>
            <xref type="bio.tools">aldex2</xref>
        </xrefs>
    </xml>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">bioconductor-aldex2</requirement>
            <requirement type="package" version="1.14.2">r-data.table</requirement>
            <requirement type="package" version="1.7.1">r-optparse</requirement>
            <requirement type="package" version="1.9.2">r-qgraph</requirement>
        </requirements>
    </xml>
    <xml name="aldex_test_param">
        <param name="aldex_test" type="select" label="Select the tests to be performed">
            <option value="t" selected="true">Welch's t and Wilcoxon tests</option>
            <option value="kw">Kruskal-Wallace and glm tests</option>
            <option value="corr">Correlation test</option>
        </param>
    </xml>
    <xml name="effect_param">
        <param argument="--effect" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Calculate abundances and effect sizes?" help="Used only for Welch's t and Wilcoxon tests or if performing tests iteratively"/>
    </xml>
    <xml name="include_sample_summary_param">
        <param argument="--include_sample_summary" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Include median clr values for each sample?"/>
    </xml>
    <xml name="iterate_param">
        <param argument="--iterate" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Perform tests iteratively?"/>
    </xml>
    <xml name="sanitize_query" token_validinitial="string.printable">
        <sanitizer>
            <valid initial="@VALIDINITIAL@">
                <remove value="&apos;"/>
            </valid>
            <mapping initial="none">
                <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;"/>
            </mapping>
        </sanitizer>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1371/journal.pone.0067019</citation>
            <citation type="doi">10.1186/2049-2618-2-15</citation>
            <citation type="doi">10.1080/10618600.2015.1131161</citation>
        </citations>
    </xml>
</macros>