Mercurial > repos > iuc > amplican

view test-data/events_filtered_shifted_normalized.csv @ 0:71adaaace336 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amplican commit 48a91cdf44f4d7e332b852bb2ced6cd180147fdc"
author iuc
date Wed, 22 Sep 2021 21:01:40 +0000
parents
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seqnames,start,end,width,strand,originally,replacement,type,read_id,score,counts,readType,overlaps,consensus
ID_3,-40,-24,17,+,"","",deletion,3,860,1,FALSE,FALSE,TRUE
ID_3,-40,-24,17,-,"","",deletion,3,860,1,FALSE,FALSE,FALSE
ID_1,-35,-35,1,+,A,G,mismatch,1,597,3,FALSE,FALSE,TRUE
ID_1,-35,-35,1,+,A,G,mismatch,2,557,2,FALSE,FALSE,TRUE
ID_1,-35,-35,1,+,A,G,mismatch,4,532,1,FALSE,FALSE,TRUE
ID_1,-35,-35,1,-,A,G,mismatch,1,597,3,FALSE,FALSE,FALSE
ID_1,-35,-35,1,-,A,G,mismatch,2,557,2,FALSE,FALSE,FALSE
ID_1,-35,-35,1,-,A,G,mismatch,4,532,1,FALSE,FALSE,FALSE
ID_1,-32,51,84,+,"","",deletion,4,532,1,FALSE,TRUE,TRUE
ID_1,-32,51,84,-,"","",deletion,4,532,1,FALSE,TRUE,FALSE
ID_1,-28,45,74,+,"","",deletion,2,557,2,FALSE,TRUE,TRUE
ID_1,-28,45,74,-,"","",deletion,2,557,2,FALSE,TRUE,FALSE
ID_1,-24,41,66,+,"","",deletion,1,597,3,FALSE,TRUE,TRUE
ID_1,-24,41,66,-,"","",deletion,1,597,3,FALSE,TRUE,FALSE
ID_2,-9,-5,5,-,"","",deletion,3,885,1,FALSE,TRUE,FALSE
ID_2,-9,-5,5,+,"","",deletion,3,885,1,FALSE,TRUE,TRUE
ID_2,-4,4,9,-,"","",deletion,2,865,2,FALSE,TRUE,FALSE
ID_2,-4,4,9,+,"","",deletion,2,865,2,FALSE,TRUE,TRUE
ID_3,-3,2,6,+,"","",deletion,2,885,2,FALSE,TRUE,TRUE
ID_3,-3,2,6,-,"","",deletion,2,885,2,FALSE,TRUE,FALSE
ID_3,0,17,18,+,"","",deletion,1,819,5,FALSE,TRUE,TRUE
ID_3,0,17,18,-,"","",deletion,1,819,5,FALSE,TRUE,FALSE
ID_2,5,17,13,-,"","",deletion,1,845,3,FALSE,TRUE,FALSE
ID_2,5,17,13,+,"","",deletion,1,845,3,FALSE,TRUE,TRUE
ID_3,8,23,16,+,"",CCCCCCCCCCCCCCCC,insertion,3,860,1,FALSE,TRUE,TRUE
ID_3,8,23,16,-,"",CCCCCCCCCCCCCCCC,insertion,3,860,1,FALSE,TRUE,FALSE
ID_3,15,20,6,+,"","",deletion,2,885,2,FALSE,TRUE,TRUE
ID_3,15,20,6,-,"","",deletion,2,885,2,FALSE,TRUE,FALSE
ID_5,17,17,1,+,G,A,mismatch,2,961,2,TRUE,TRUE,TRUE
ID_5,17,17,1,-,G,A,mismatch,2,961,2,TRUE,TRUE,FALSE
ID_1,42,61,20,+,"",AAAAAAAAAAAAAAAAAAAA,insertion,1,597,3,FALSE,FALSE,TRUE
ID_1,42,61,20,-,"",AAAAAAAAAAAAAAAAAAAA,insertion,1,597,3,FALSE,FALSE,FALSE
ID_1,46,65,20,+,"",AAAAAAAAAAAAAAAAAAAA,insertion,2,557,2,FALSE,FALSE,TRUE
ID_1,46,65,20,-,"",AAAAAAAAAAAAAAAAAAAA,insertion,2,557,2,FALSE,FALSE,FALSE
ID_1,97,97,1,+,T,A,mismatch,1,597,3,FALSE,FALSE,TRUE
ID_1,97,97,1,+,T,A,mismatch,2,557,2,FALSE,FALSE,TRUE
ID_1,97,97,1,-,T,A,mismatch,1,597,3,FALSE,FALSE,FALSE
ID_1,97,97,1,-,T,A,mismatch,2,557,2,FALSE,FALSE,FALSE
ID_3,101,101,1,+,G,T,mismatch,1,819,5,FALSE,FALSE,TRUE
ID_3,101,101,1,-,G,T,mismatch,1,819,5,FALSE,FALSE,FALSE
ID_3,102,102,1,+,C,T,mismatch,1,819,5,FALSE,FALSE,TRUE
ID_3,102,102,1,-,C,T,mismatch,1,819,5,FALSE,FALSE,FALSE
ID_3,103,103,1,+,C,T,mismatch,1,819,5,FALSE,FALSE,TRUE
ID_3,103,103,1,-,C,T,mismatch,1,819,5,FALSE,FALSE,FALSE
ID_3,104,104,1,+,A,T,mismatch,1,819,5,FALSE,FALSE,TRUE
ID_3,104,104,1,-,A,T,mismatch,1,819,5,FALSE,FALSE,FALSE
ID_3,105,105,1,+,"",T,insertion,1,819,5,FALSE,FALSE,TRUE
ID_3,105,105,1,-,"",T,insertion,1,819,5,FALSE,FALSE,FALSE
ID_1,105,105,1,+,G,A,mismatch,4,532,1,FALSE,FALSE,TRUE
ID_1,105,105,1,-,G,A,mismatch,4,532,1,FALSE,FALSE,FALSE
ID_4,-68,-42,27,+,"","",deletion,2,767,2,FALSE,FALSE,TRUE
ID_4,-68,-42,27,-,"","",deletion,2,767,2,FALSE,FALSE,FALSE
ID_4,-67,-36,32,+,"","",deletion,1,497,4,FALSE,FALSE,TRUE
ID_4,-67,-36,32,-,"","",deletion,1,626,4,FALSE,FALSE,FALSE
ID_4,-52,-41,12,+,"","",deletion,3,833,1,FALSE,FALSE,TRUE
ID_4,-52,-41,12,-,"","",deletion,3,824,1,FALSE,FALSE,FALSE
ID_4,-13,-6,8,+,"","",deletion,1,497,4,FALSE,FALSE,FALSE
ID_4,-2,-2,1,+,C,A,mismatch,1,497,4,FALSE,TRUE,TRUE
ID_4,0,0,1,+,G,C,mismatch,1,497,4,FALSE,TRUE,TRUE
ID_4,2,2,1,+,C,G,mismatch,1,497,4,FALSE,TRUE,TRUE
ID_4,3,3,1,+,C,A,mismatch,1,497,4,FALSE,TRUE,TRUE
ID_4,5,22,18,+,"",ACCACACGTGCATCGTAC,insertion,3,833,1,FALSE,TRUE,TRUE
ID_4,5,22,18,-,"",ACCACACGTGCATCGTAC,insertion,3,824,1,FALSE,TRUE,FALSE
ID_4,8,8,1,+,A,T,mismatch,1,497,4,FALSE,TRUE,TRUE
ID_4,9,9,1,+,A,G,mismatch,1,497,4,FALSE,TRUE,TRUE
ID_4,10,11,2,+,"","",deletion,1,497,4,FALSE,TRUE,TRUE
ID_4,12,22,11,-,"",ACTGACTGCTG,insertion,1,626,4,FALSE,TRUE,TRUE
ID_4,14,21,8,+,"",GGGGGGGG,insertion,2,767,2,FALSE,TRUE,TRUE
ID_4,14,21,8,-,"",GGGGGGGG,insertion,2,767,2,FALSE,TRUE,FALSE
ID_4,41,41,1,+,C,G,mismatch,1,497,4,FALSE,FALSE,TRUE
ID_4,41,41,1,-,C,G,mismatch,1,626,4,FALSE,FALSE,FALSE
ID_4,43,62,20,+,"","",deletion,1,497,4,FALSE,FALSE,TRUE
ID_4,43,62,20,-,"","",deletion,1,626,4,FALSE,FALSE,FALSE
ID_4,55,55,1,+,T,A,mismatch,2,767,2,FALSE,FALSE,TRUE
ID_4,55,55,1,-,T,A,mismatch,2,767,2,FALSE,FALSE,FALSE
ID_4,58,58,1,+,G,C,mismatch,3,833,1,FALSE,FALSE,TRUE
ID_4,58,58,1,-,G,C,mismatch,3,824,1,FALSE,FALSE,FALSE
ID_4,60,60,1,+,A,T,mismatch,3,833,1,FALSE,FALSE,TRUE
ID_4,60,60,1,-,A,T,mismatch,3,824,1,FALSE,FALSE,FALSE
ID_4,63,63,1,+,A,G,mismatch,3,833,1,FALSE,FALSE,TRUE
ID_4,63,63,1,-,A,G,mismatch,3,824,1,FALSE,FALSE,FALSE
ID_4,63,63,1,+,A,T,mismatch,2,767,2,FALSE,FALSE,TRUE
ID_4,63,63,1,-,A,T,mismatch,2,767,2,FALSE,FALSE,FALSE