Mercurial > repos > iuc > ampvis2_alpha_diversity
comparison alpha_diversity.xml @ 6:289d6299bd2e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit cb30e4b8d695e096753fe7cb5056b118b25a87fd
| author | iuc |
|---|---|
| date | Mon, 26 Aug 2024 16:16:20 +0000 |
| parents | 21b85417e4c3 |
| children | 77000428c613 |
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| 5:61acf8a76396 | 6:289d6299bd2e |
|---|---|
| 37 <tests> | 37 <tests> |
| 38 <test> | 38 <test> |
| 39 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> | 39 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> |
| 40 <output name="alphadiv"> | 40 <output name="alphadiv"> |
| 41 <assert_contents> | 41 <assert_contents> |
| 42 <has_line line="SampleID	Plant	Date	Year	Period	Reads	ObservedOTUs	Shannon	Simpson	invSimpson"/> | 42 <has_line line="SampleID	Plant	Date	Year	Period	Reads	uniqueOTUs	Shannon	Simpson	invSimpson"/> |
| 43 <has_text text="16SAMP-536	"/> | 43 <has_text text="16SAMP-536	"/> |
| 44 <has_text text="	Aalborg West	"/> | 44 <has_text text="	Aalborg West	"/> |
| 45 <has_n_lines n="68"/> | 45 <has_n_lines n="68"/> |
| 46 <has_n_columns n="10"/> | 46 <has_n_columns n="10"/> |
| 47 </assert_contents> | 47 </assert_contents> |
| 52 <param name="measure" value="observed,shannon"/> | 52 <param name="measure" value="observed,shannon"/> |
| 53 <param name="richness" value="true"/> | 53 <param name="richness" value="true"/> |
| 54 <param name="rarefy" value="500"/> | 54 <param name="rarefy" value="500"/> |
| 55 <output name="alphadiv"> | 55 <output name="alphadiv"> |
| 56 <assert_contents> | 56 <assert_contents> |
| 57 <has_line line="SampleID	Plant	Date	Year	Period	RawReads	Reads	ObservedOTUs	Shannon	Chao1	ACE"/> | 57 <has_line line="SampleID	Plant	Date	Year	Period	RawReads	Reads	uniqueOTUs	Shannon	Simpson	invSimpson	Chao1	ACE"/> |
| 58 <has_text text="16SAMP-536	"/> | 58 <has_text text="16SAMP-536	"/> |
| 59 <has_text text="	Aalborg West	"/> | 59 <has_text text="	Aalborg West	"/> |
| 60 <has_n_lines n="68"/> | 60 <has_n_lines n="68"/> |
| 61 <has_n_columns n="11"/> | 61 <has_n_columns n="13"/> |
| 62 <has_text text="	500	"/> | 62 <has_text text="	500	"/> |
| 63 </assert_contents> | 63 </assert_contents> |
| 64 </output> | 64 </output> |
| 65 </test> | 65 </test> |
| 66 </tests> | 66 </tests> |