Mercurial > repos > iuc > ampvis2_boxplot
comparison boxplot.xml @ 3:6eae290d762b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 5b6fb9641a1320e13aba367c4e7bc52ae064acc6
| author | iuc |
|---|---|
| date | Mon, 26 Feb 2024 07:49:06 +0000 |
| parents | de03693b75b1 |
| children | b4c6f8741989 |
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| 2:de03693b75b1 | 3:6eae290d762b |
|---|---|
| 35 plot_log = $plot_log, | 35 plot_log = $plot_log, |
| 36 #if str($adjust_zero) != "" | 36 #if str($adjust_zero) != "" |
| 37 adjust_zero = $adjust_zero, | 37 adjust_zero = $adjust_zero, |
| 38 #end if | 38 #end if |
| 39 normalise = $normalise | 39 normalise = $normalise |
| 40 ## detailed_output = TRUE | |
| 41 ) | 40 ) |
| 42 @OUTPUT_TOKEN@ | 41 @OUTPUT_TOKEN@ |
| 43 ]]></configfile> | 42 ]]></configfile> |
| 44 </configfiles> | 43 </configfiles> |
| 45 <inputs> | 44 <inputs> |
| 46 <expand macro="rds_metadata_input_macro"/> | 45 <expand macro="rds_metadata_input_macro"/> |
| 47 <expand macro="metadata_select_discrete" argument="group_by" label="Group the samples" help="by a discrete variable in the metadata"/> | 46 <expand macro="metadata_select_discrete" argument="group_by" label="Group the samples" help="by a discrete variable in the metadata"/> |
| 48 <param argument="sort_by" type="select" label="Sort boxplots by"> | 47 <param argument="sort_by" type="select" label="Sort boxplots by"> |
| 49 <option value="median">Median</option> | 48 <option value="median">Median</option> |
| 50 <option value="mean">Mean</option> | 49 <option value="mean">Mean</option> |
| 51 <option value="total">Total</option> | 50 <option value="sum">Sum</option> |
| 52 </param> | 51 </param> |
| 53 <param argument="plot_type" type="select" label="Plot type"> | 52 <param argument="plot_type" type="select" label="Plot type"> |
| 54 <option value="boxplot">Boxplot</option> | 53 <option value="boxplot">Boxplot</option> |
| 55 <option value="point">Points</option> | 54 <option value="point">Points</option> |
| 56 </param> | 55 </param> |
| 77 </test> | 76 </test> |
| 78 <test> | 77 <test> |
| 79 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> | 78 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> |
| 80 <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> | 79 <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> |
| 81 <param name="group_by" value="Plant"/> | 80 <param name="group_by" value="Plant"/> |
| 82 <param name="sort_by" value="total"/> | 81 <param name="sort_by" value="sum"/> |
| 83 <param name="tax_show" value="5"/> | 82 <param name="tax_show" value="5"/> |
| 84 <param name="plot_flip" value="true"/> | 83 <param name="plot_flip" value="true"/> |
| 85 <param name="plot_log" value="true"/> | 84 <param name="plot_log" value="true"/> |
| 86 <param name="adjust_zero" value="100000"/> | 85 <param name="adjust_zero" value="100000"/> |
| 87 <param name="normalise" value="true"/> | 86 <param name="normalise" value="true"/> |