Mercurial > repos > iuc > ampvis2_boxplot
comparison boxplot.xml @ 4:b4c6f8741989 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit ab75ba7665d7fb5c18ad08dfbba92b273f991dfc
| author | iuc |
|---|---|
| date | Sat, 16 Mar 2024 11:39:04 +0000 |
| parents | 6eae290d762b |
| children |
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| 3:6eae290d762b | 4:b4c6f8741989 |
|---|---|
| 70 <expand macro="out_macro"/> | 70 <expand macro="out_macro"/> |
| 71 </outputs> | 71 </outputs> |
| 72 <tests> | 72 <tests> |
| 73 <test> | 73 <test> |
| 74 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> | 74 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> |
| 75 <output name="plot" value="AalborgWWTPs-boxplot.pdf" ftype="pdf"/> | 75 <output name="plot" value="AalborgWWTPs-boxplot.pdf" ftype="pdf" compare="sim_size"/> |
| 76 </test> | 76 </test> |
| 77 <test> | 77 <test> |
| 78 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> | 78 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> |
| 79 <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> | 79 <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> |
| 80 <param name="group_by" value="Plant"/> | 80 <param name="group_by" value="Plant"/> |
| 82 <param name="tax_show" value="5"/> | 82 <param name="tax_show" value="5"/> |
| 83 <param name="plot_flip" value="true"/> | 83 <param name="plot_flip" value="true"/> |
| 84 <param name="plot_log" value="true"/> | 84 <param name="plot_log" value="true"/> |
| 85 <param name="adjust_zero" value="100000"/> | 85 <param name="adjust_zero" value="100000"/> |
| 86 <param name="normalise" value="true"/> | 86 <param name="normalise" value="true"/> |
| 87 <output name="plot" value="AalborgWWTPs-boxplot-group.pdf" ftype="pdf"/> | 87 <output name="plot" value="AalborgWWTPs-boxplot-group.pdf" ftype="pdf" compare="sim_size"/> |
| 88 </test> | 88 </test> |
| 89 <test> | 89 <test> |
| 90 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> | 90 <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> |
| 91 <param name="plot_type" value="point"/> | 91 <param name="plot_type" value="point"/> |
| 92 <param name="point_size" value="5"/> | 92 <param name="point_size" value="5"/> |
| 93 <param name="tax_aggregate" value="Order"/> | 93 <param name="tax_aggregate" value="Order"/> |
| 94 <param name="tax_add" value="Phylum"/> | 94 <param name="tax_add" value="Phylum"/> |
| 95 <output name="plot" value="AalborgWWTPs-boxplot-point.pdf" ftype="pdf"/> | 95 <output name="plot" value="AalborgWWTPs-boxplot-point.pdf" ftype="pdf" compare="sim_size"/> |
| 96 </test> | 96 </test> |
| 97 </tests> | 97 </tests> |
| 98 <help><![CDATA[ | 98 <help><![CDATA[ |
| 99 What it does | 99 What it does |
| 100 ============ | 100 ============ |