Mercurial > repos > iuc > ampvis2_heatmap

changeset 4:14695ae019be draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit ab75ba7665d7fb5c18ad08dfbba92b273f991dfc
author iuc
date Sat, 16 Mar 2024 11:31:43 +0000
parents a2d4da20749a
children
files heatmap.xml macros.xml
diffstat 2 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/heatmap.xml	Mon Feb 26 07:53:13 2024 +0000
+++ b/heatmap.xml	Sat Mar 16 11:31:43 2024 +0000
@@ -200,7 +200,7 @@
         <!-- defaults -->
         <test expect_num_outputs="1">
             <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> 
-            <output name="plot" value="AalborgWWTPs-heatmap.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-heatmap.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- group and facet-->
         <test expect_num_outputs="1">
@@ -208,7 +208,7 @@
             <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> 
             <param name="group_by" value="Plant"/>
             <param name="facet_by" value="Year"/>
-            <output name="plot_raw" value="AalborgWWTPs-heatmap-group-facet.pdf" ftype="pdf"/>
+            <output name="plot_raw" value="AalborgWWTPs-heatmap-group-facet.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- group and facet and test raw output -->
         <test expect_num_outputs="1">
@@ -223,7 +223,7 @@
         <test expect_num_outputs="1">
             <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> 
             <param name="normalise" value="true"/>
-            <output name="plot" value="AalborgWWTPs-heatmap-normalise.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-heatmap-normalise.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- normalise by a specific sample -->
         <test expect_num_outputs="1">
@@ -231,7 +231,7 @@
             <param name="metadata_list" value="AalborgWWTPs-metadata.list"/> 
             <param name="normalise" value="true"/>
             <param name="normalise_by" value="16SAMP-747"/>
-            <output name="plot" value="AalborgWWTPs-heatmap-normalise_by_sample.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-heatmap-normalise_by_sample.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- normalise by a metadata variable
             https://github.com/KasperSkytte/ampvis2/issues/168 -->
@@ -252,7 +252,7 @@
             <param name="tax_add" value="Class"/>
             <param name="tax_show" value="5"/>
             <param name="showRemainingTaxa" value="true"/>
-            <output name="plot" value="AalborgWWTPs-heatmap-tax.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-heatmap-tax.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- sort by a specific sample -->
         <test expect_num_outputs="1">
@@ -262,7 +262,7 @@
                 <param name="sort_by_sel" value="sample"/>
                 <param name="sort_by" value="16SAMP-747"/>
             </conditional>
-            <output name="plot" value="AalborgWWTPs-heatmap-sort_by_sample.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-heatmap-sort_by_sample.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <!-- sort by a group of samples -->
         <test expect_num_outputs="1">
@@ -273,7 +273,7 @@
                 <param name="sort_by_sel" value="group"/>
                 <param name="sort_by" value="Winter"/>
             </conditional>
-            <output name="plot" value="AalborgWWTPs-heatmap-sort_by_group.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-heatmap-sort_by_group.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <test expect_num_outputs="1">
             <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> 
@@ -282,7 +282,7 @@
                 <param name="plot_functions_sel" value="midasfieldguide"/>
                 <param name="functions" value="MiDAS,Filamentous,AOB,NOB,GAO"/>
             </conditional>
-            <output name="plot" value="AalborgWWTPs-heatmap-plot_foo_midas.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-heatmap-plot_foo_midas.pdf" ftype="pdf" compare="sim_size"/>
         </test>
         <test expect_num_outputs="1">
             <param name="data" value="AalborgWWTPs.rds" ftype="ampvis2"/> 
@@ -292,7 +292,7 @@
                 <param name="function_data" value="AalborgWWTPs-functions.tsv" ftype="tsv"/>
                 <param name="functions" value="Foo,Bar"/>
             </conditional>
-            <output name="plot" value="AalborgWWTPs-heatmap-plot_foo_file.pdf" ftype="pdf"/>
+            <output name="plot" value="AalborgWWTPs-heatmap-plot_foo_file.pdf" ftype="pdf" compare="sim_size"/>
         </test>
     
     </tests>
--- a/macros.xml	Mon Feb 26 07:53:13 2024 +0000
+++ b/macros.xml	Sat Mar 16 11:31:43 2024 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">2.8.6</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">22.01</token>
     <xml name="header">
         <xrefs>