Mercurial > repos > iuc > ampvis2_load
comparison load.xml @ 6:576dd33588bf draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit cb30e4b8d695e096753fe7cb5056b118b25a87fd
| author | iuc |
|---|---|
| date | Mon, 26 Aug 2024 16:14:51 +0000 |
| parents | 932d7573a561 |
| children |
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| 5:91efbd7b52dc | 6:576dd33588bf |
|---|---|
| 167 <test expect_num_outputs="1"> | 167 <test expect_num_outputs="1"> |
| 168 <param name="otutable" value="rich-dense.biom" ftype="biom1"/> | 168 <param name="otutable" value="rich-dense.biom" ftype="biom1"/> |
| 169 <param name="write_lists" value=""/> | 169 <param name="write_lists" value=""/> |
| 170 <output name="ampvis" ftype="ampvis2"> | 170 <output name="ampvis" ftype="ampvis2"> |
| 171 <assert_contents> | 171 <assert_contents> |
| 172 <has_size value="748"/> | 172 <has_size value="748" delta="2"/> |
| 173 </assert_contents> | 173 </assert_contents> |
| 174 </output> | 174 </output> |
| 175 <assert_stdout> | 175 <assert_stdout> |
| 176 <has_text text="ampvis2 object with 3 elements."/> | 176 <has_text text="ampvis2 object with 3 elements."/> |
| 177 <has_text text="4.5"/> | 177 <has_text text="4.5"/> |
| 182 <test expect_num_outputs="1"> | 182 <test expect_num_outputs="1"> |
| 183 <param name="otutable" value="rich-sparse.biom" ftype="biom1"/> | 183 <param name="otutable" value="rich-sparse.biom" ftype="biom1"/> |
| 184 <param name="write_lists" value=""/> | 184 <param name="write_lists" value=""/> |
| 185 <output name="ampvis" ftype="ampvis2"> | 185 <output name="ampvis" ftype="ampvis2"> |
| 186 <assert_contents> | 186 <assert_contents> |
| 187 <has_size value="751"/> | 187 <has_size value="751" delta="2"/> |
| 188 </assert_contents> | 188 </assert_contents> |
| 189 </output> | 189 </output> |
| 190 <assert_stdout> | 190 <assert_stdout> |
| 191 <has_text text="ampvis2 object with 3 elements."/> | 191 <has_text text="ampvis2 object with 3 elements."/> |
| 192 <has_text text="4.5"/> | 192 <has_text text="4.5"/> |
| 197 <!-- input file seems to miss metadata check that no metadata & taxonomy is loaded (ampvis2 adds dummy metadata) --> | 197 <!-- input file seems to miss metadata check that no metadata & taxonomy is loaded (ampvis2 adds dummy metadata) --> |
| 198 <test expect_num_outputs="1"> | 198 <test expect_num_outputs="1"> |
| 199 <param name="otutable" value="min_sparse_otu_table_hdf5.biom" ftype="biom2"/> | 199 <param name="otutable" value="min_sparse_otu_table_hdf5.biom" ftype="biom2"/> |
| 200 <output name="ampvis" ftype="ampvis2"> | 200 <output name="ampvis" ftype="ampvis2"> |
| 201 <assert_contents> | 201 <assert_contents> |
| 202 <has_size value="395"/> | 202 <has_size value="395" delta="2"/> |
| 203 </assert_contents> | 203 </assert_contents> |
| 204 </output> | 204 </output> |
| 205 <param name="write_lists" value=""/> | 205 <param name="write_lists" value=""/> |
| 206 <assert_stdout> | 206 <assert_stdout> |
| 207 <has_text text="ampvis2 object with 3 elements."/> | 207 <has_text text="ampvis2 object with 3 elements."/> |
| 212 </test> | 212 </test> |
| 213 <test expect_num_outputs="1"> | 213 <test expect_num_outputs="1"> |
| 214 <param name="otutable" value="rich_sparse_otu_table_hdf5.biom" ftype="biom2"/> | 214 <param name="otutable" value="rich_sparse_otu_table_hdf5.biom" ftype="biom2"/> |
| 215 <output name="ampvis" ftype="ampvis2"> | 215 <output name="ampvis" ftype="ampvis2"> |
| 216 <assert_contents> | 216 <assert_contents> |
| 217 <has_size value="753"/> | 217 <has_size value="753" delta="2"/> |
| 218 </assert_contents> | 218 </assert_contents> |
| 219 </output> | 219 </output> |
| 220 <param name="write_lists" value=""/> | 220 <param name="write_lists" value=""/> |
| 221 <assert_stdout> | 221 <assert_stdout> |
| 222 <has_text text="ampvis2 object with 3 elements."/> | 222 <has_text text="ampvis2 object with 3 elements."/> |
| 232 <param name="taxonomy" value="dada2-assignTaxonomy.tabular"/> | 232 <param name="taxonomy" value="dada2-assignTaxonomy.tabular"/> |
| 233 <param name="asv_otu_col_empty" value="true"/> | 233 <param name="asv_otu_col_empty" value="true"/> |
| 234 <param name="asv_sequences" value="true"/> | 234 <param name="asv_sequences" value="true"/> |
| 235 <output name="ampvis" ftype="ampvis2"> | 235 <output name="ampvis" ftype="ampvis2"> |
| 236 <assert_contents> | 236 <assert_contents> |
| 237 <has_size min="100"/> | 237 <has_size min="100" delta="2"/> |
| 238 </assert_contents> | 238 </assert_contents> |
| 239 </output> | 239 </output> |
| 240 <output name="metadata_list_out"> | 240 <output name="metadata_list_out"> |
| 241 <assert_contents> | 241 <assert_contents> |
| 242 <has_n_lines n="23"/> | 242 <has_n_lines n="23"/> |