# HG changeset patch # User iuc # Date 1649067648 0 # Node ID 132d2a79415295b96caca30d3a1f7bc840d0179b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 7c0ecbffdb5e993f5af7e3b52c424c2761fb91d3" diff -r 000000000000 -r 132d2a794152 TODO --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/TODO Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,6 @@ +use duplicated options instead of tokens to define defaults + + +detailed data for boxplot (see heatmap) + + diff -r 000000000000 -r 132d2a794152 macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,271 @@ + + 2.7.17 + 0 + 22.01 + + + ampvis + + + r-ampvis2 + r-readr + + /dev/null | grep -v -i "WARNING: ") + ]]> + + + + + 10.1101/299537 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ggsave("$plot", + print(plot), + device="$output_options.out_format" + #if str($output_options.plot_width) != '' + , width = $output_options.plot_width + #end if + #if str($output_options.plot_height) != '' + , height = $output_options.plot_height + #end if + ) + + + + + + + + + + + +
+ + + + + + + + +
+ + + + #if str($rarefy) != "" + , rarefy = $rarefy + #end if + + + + + + + + + + + An ampvis2 RDS dataset obtained by the ``ampvis2: load`` tool (or ``ampvis2: mergereplicates`` or one of the + ``ampvis2: subset ...`` tools). + + + The metadata list output of the ``ampvis2: load`` tool (or ``ampvis2: mergereplicates`` or the + ``ampvis2: subset sample`` tool). This input is only used for providing + values to the parameters alowing to select metadata variables or values. + + + +Preserving relative abundances in a subset of larger data +========================================================= + +By default the raw read counts in the abundance matrix are normalised +(transformed to percentages) by some ampvis2 plotting tools (for +example ``ampvis2: heatmap``, ``ampvis2: timeseries``, and more). +If this is applied to data generated by one of the ``ampvis2: subset ...`` tools +this means that the relative +abundances shown will be calculated based on the remaining taxa after the +subset, not including the removed taxa, if any. To circumvent this, enable +``normalise`` when subsetting with the ``ampvis2: subset ...``` tools, +and then disable ``normalise`` in the plotting tool. This will +transform the OTU counts to relative abundances BEFORE the subset. + + \ No newline at end of file diff -r 000000000000 -r 132d2a794152 rankabundance.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rankabundance.xml Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,77 @@ + + + + macros.xml + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + `_ function +of the ampvis2 package. + +Currently only OTU level is supported. + +Input +===== + +@HELP_RDS_INPUT@ + +@HELP_METADATA_LIST_INPUT@ + +Output +====== + +An rank abundance plot in the chosen output format. + ]]> + + \ No newline at end of file diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-boxplot-group.pdf Binary file test-data/AalborgWWTPs-boxplot-group.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-boxplot-point.pdf Binary file test-data/AalborgWWTPs-boxplot-point.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-boxplot.pdf Binary file test-data/AalborgWWTPs-boxplot.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-complete.rds Binary file test-data/AalborgWWTPs-complete.rds has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-core-multiple.pdf Binary file test-data/AalborgWWTPs-core-multiple.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-core.pdf Binary file test-data/AalborgWWTPs-core.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-frequency-group_by.pdf Binary file test-data/AalborgWWTPs-frequency-group_by.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-frequency.pdf Binary file test-data/AalborgWWTPs-frequency.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-functions.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-functions.tsv Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,80 @@ +Genus Foo Bar +g__Acetitomaculum A Z +g__Ruminococcaceae UCG-005 A Z +g__Dyadobacter A Z +g__Nitrosomonas A Z +g__Tetrasphaera A Z +g__Desulforegula A Z +g__Rummeliibacillus A Z +g__ A Z +g__Fusicatenibacter A Z +g__Ruminiclostridium 1 A Z +g__uncultured A Z +g__Brooklawnia A Z +g__Sulfuritalea A Z +g__Lactobacillus A Z +g__Flavobacterium A Z +g__Acidicaldus A Z +g__Candidatus Defluviifilum A Z +g__Ruminococcaceae UCG-010 A Z +g__SBR2113 A Z +g__Subdoligranulum A Z +g__Ramlibacter B Z +g__Bosea B Z +g__Desulfobulbus B Z +g__Nocardioides B Z +g__Fusibacter B Z +g__SM1F10 B Z +g__Hyphomicrobium B Z +g__Meiothermus B Z +g__Trichococcus B Y +g__oca15 B Y +g__Simplicispira B Y +g__Sandaracinus B Y +g__OM27 clade B Y +g__Collinsella B Y +g__MNG7 B Y +g__Roseomonas B Y +g__Pirellula B Y +g__Clostridium sensu stricto 1 B Y +g__Acetoanaerobium B Y +g__Nitrospira B Y +g__Propioniciclava B Y +g__Parabacteroides C Y +g__Actinomyces C Y +g__Aeromicrobium C Y +g__Clostridium sensu stricto 6 C Y +g__Reyranella C Y +g__Proteiniclasticum C Y +g__B1-K1A-105 C Y +g__Prevotellaceae UCG-004 C Y +g__Haliangium C Y +g__Ureibacillus C Y +g__Ruminococcus 2 C Y +g__CYCU-0281 C Y +g__Parafilimonas C Y +g__Aestuariimicrobium C Y +g__Diaminobutyricimonas C Y +g__K2-78 C Y +g__Erysipelatoclostridium C Y +g__CL500-29 marine group C Y +g__Bacteroides C Y +g__Tessaracoccus C Y +g__Gordonia C Y +g__Senegalimassilia C Y +g__Atopobium C Y +g__Proteiniphilum C Y +g__Uliginosibacterium C Y +g__WCHB1-50 C Y +g__Christensenellaceae R-7 group C X +g__Fodinibacter C X +g__Defluviicoccus C X +g__Acidovorax C X +g__Salana C X +g__Propionimicrobium C X +g__Litorilinea C X +g__Faecalitalea C X +g__Ruminiclostridium 5 C X +g__Rivicola C X +g__[Eubacterium] coprostanoligenes group C X +g__Lewinella C X diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-heatmap-group-facet.pdf Binary file test-data/AalborgWWTPs-heatmap-group-facet.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-heatmap-group-facet.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-heatmap-group-facet.tsv Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,11 @@ +"Aalborg East 2006" "Aalborg East 2007" "Aalborg East 2008" "Aalborg East 2009" "Aalborg East 2010" "Aalborg East 2011" "Aalborg East 2012" "Aalborg East 2013" "Aalborg East 2014" "Aalborg East 2015" "Aalborg West 2006" "Aalborg West 2007" "Aalborg West 2008" "Aalborg West 2009" "Aalborg West 2010" "Aalborg West 2011" "Aalborg West 2012" "Aalborg West 2013" "Aalborg West 2014" "Aalborg West 2015" +"Proteobacteria" 38.1319941850736 35.9175566196596 35.3239223028173 34.9909501829368 36.3283102328281 38.9915608421962 53.8529383953324 51.3460117968074 72.8722023985104 57.4344068148402 54.2087542087542 36.4326282804544 38.4757369086407 38.3005233882427 37.9516676472635 40.6258026017424 38.6472843550883 44.6513837857578 60.526398421492 45.2994925859604 +"Actinobacteria" 16.1262929321795 18.8003924243249 19.7958105485988 12.3985441180767 11.9508628506455 11.9822773321894 12.658277703168 9.86692802463733 4.41749530915451 5.99609488982366 17.8451178451178 30.1393785089437 27.2165206926683 27.0923034080929 28.0991209423852 18.3670127700203 20.8878481743068 14.4816058069532 5.78450375894784 6.93249190968154 +"Chloroflexi" 18.3131199353417 13.271226587611 18.1723687926502 29.7622211645584 27.2162188095204 27.4083281864652 13.3425292037346 12.0421436922346 2.84378751176108 1.05381359276388 5.72390572390572 9.29625277451364 13.2781161639047 9.09181786374769 8.90144026478223 13.2039431913116 11.6630983081279 10.2302102712301 9.44167249733746 12.9289629664804 +"Bacteroidetes" 15.238944647955 17.0944898458844 4.80841552255416 6.79789110506974 7.21184338673076 12.2970476460921 12.0216954506151 19.8089694348484 15.1180034568227 26.7842680520852 10.4377104377104 7.90899595247421 4.19318035043356 6.73335761055059 5.58986985476623 11.2276978159685 11.4612545797781 15.2032565168297 14.8111317970807 21.1241394277011 +"Firmicutes" 6.65926307960792 8.08826902584616 13.5323428478027 11.135420901698 12.2381391019829 5.3065353223222 4.15566119372564 5.39379512409247 2.50275820445282 2.65696422748934 6.73400673400673 7.45201723462593 6.59801488988521 10.8497740076687 7.68965190921149 4.23883518319609 4.98282022116985 5.50491710923881 2.78564846131452 2.80406275115902 +"Acidobacteria" 1.84522886779123 3.19309844412278 0.579562724509533 1.22263018757176 1.22019363164889 1.8556042232708 2.61733996209427 0.818911905713214 1.77946201792775 4.74365552197578 3.03030303030303 3.46814205509858 2.58723846405261 4.34169469257189 7.1137753294489 6.57976369495166 6.87742567426134 6.0700195803001 4.28737081122707 9.42431811091215 +"Planctomycetes" 0.746563781302169 0.25464448503398 0.987168692856751 0.411589894060679 0.492479742080341 0.564736695897598 0.0730994152046784 0.152535023867842 0.0235849056603774 0.0250752256770311 1.34680134680135 3.09766288027158 4.52112645443821 1.78687459389214 2.47741727664007 2.23035684449218 1.84033791082559 1.3257701894156 1.01973806934665 0.584070896715898 +"Deinococcus-Thermus" 1.45963179413928 1.00870720718181 5.11548610677814 1.03259577383117 0.684345869495339 0.424454945159917 0.0955583622050142 0 0.0474171268233897 0.685625086716673 0 0 0 0 0 0 0 0 0 0 +"Hydrogenedentes" 0.134770889487871 0.244052637669659 0.152267354395014 0.155400155400155 0.199004975124378 0.308893572463899 0.402906470230555 0.0861326442721792 0.0747487181080226 0.185094894105122 0 0.120772946859903 0.4920049200492 0.562660211783019 0.404258953481751 0.500747105859888 1.36061070732636 0.873921616081284 0.298532298518384 0.373761440277151 +"WCHB1-60" 0.789762842230565 0.41040519763924 0.129960317460317 0.0556483027267668 0.136612021857924 0 0.0730994152046784 0 0 0 0 0.233385559472516 0.879805929046964 0.21706688373355 0.836894586894587 1.25864184270199 1.14445526079798 0.629254175715777 0.0949491695303551 0.148135364082208 diff -r 000000000000 -r 132d2a794152 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test-data/AalborgWWTPs-heatmap.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-mergereplicates.rds Binary file test-data/AalborgWWTPs-mergereplicates.rds has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-metadata.list --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-metadata.list Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,125 @@ +SampleID 16SAMP-747 TRUE character +SampleID 16S-AMP-1168 TRUE character +SampleID 16SAMP-4603 TRUE character +SampleID 16S-AMP-1149 TRUE character +SampleID 16SAMP-537 TRUE character +SampleID 16S-AMP-1114 TRUE character +SampleID 16SAMP-3893 TRUE character +SampleID 16SAMP-703 TRUE character +SampleID 16SAMP-638 TRUE character +SampleID 16SAMP-2611 TRUE character +SampleID 16S-AMP-1100 TRUE character +SampleID 16SAMP-608 TRUE character +SampleID 16SAMP-636 TRUE character +SampleID 16SAMP-13288 TRUE character +SampleID 16SAMP-719 TRUE character +SampleID 16S-AMP-1098 TRUE character +SampleID 16SAMP-536 TRUE character +SampleID 16S-AMP-1169 TRUE character +SampleID 16SAMP-635 TRUE character +SampleID 16SAMP-637 TRUE character +SampleID 16SAMP-717 TRUE character +SampleID 16S-AMP-1148 TRUE character +SampleID 16SAMP-735 TRUE character +SampleID 16SAMP-729 TRUE character +SampleID 16SAMP-738 TRUE character +SampleID 16SAMP-2613 TRUE character +SampleID 16SAMP-10925 TRUE character +SampleID 16SAMP-3913 TRUE character +SampleID 16SAMP-716 TRUE character +SampleID 16SAMP-726 TRUE character +SampleID 16SAMP-728 TRUE character +SampleID 16SAMP-625 TRUE character +SampleID 16SAMP-736 TRUE character +SampleID 16SAMP-13281 TRUE character +SampleID 16SAMP-626 TRUE character +SampleID 16SAMP-704 TRUE character +SampleID 16SAMP-2612 TRUE character +SampleID 16SAMP-746 TRUE character +SampleID 16SAMP-522 TRUE character +SampleID 16SAMP-516 TRUE character +SampleID 16S-AMP-1170 TRUE character +SampleID 16S-AMP-1099 TRUE character +SampleID 16SAMP-10932 TRUE character +SampleID 16SAMP-740 TRUE character +SampleID 16SAMP-739 TRUE character +SampleID 16SAMP-4597 TRUE character +SampleID 16SAMP-535 TRUE character +SampleID 16SAMP-3941 TRUE character +SampleID 16SAMP-3953 TRUE character +SampleID 16SAMP-720 TRUE character +SampleID 16SAMP-705 TRUE character +SampleID 16SAMP-10907 TRUE character +SampleID 16SAMP-538 TRUE character +SampleID 16SAMP-10911 TRUE character +SampleID 16SAMP-737 TRUE character +SampleID 16SAMP-4591 TRUE character +SampleID 16SAMP-745 TRUE character +SampleID 16SAMP-706 TRUE character +SampleID 16SAMP-3946 TRUE character +SampleID 16S-AMP-1101 TRUE character +SampleID 16SAMP-10896 TRUE character +SampleID 16SAMP-10891 TRUE character +SampleID 16SAMP-748 TRUE character +SampleID 16SAMP-725 TRUE character +SampleID 16SAMP-730 TRUE character +SampleID 16S-AMP-1107 TRUE character +SampleID 16SAMP-727 TRUE character +Plant Aalborg East FALSE character +Plant Aalborg West FALSE character +Date 14644 FALSE Date +Date 15831 FALSE Date +Date 16301 FALSE Date +Date 16006 FALSE Date +Date 14840 FALSE Date +Date 15740 FALSE Date +Date 16107 FALSE Date +Date 13183 FALSE Date +Date 15641 FALSE Date +Date 15009 FALSE Date +Date 15571 FALSE Date +Date 15275 FALSE Date +Date 15466 FALSE Date +Date 16475 FALSE Date +Date 13744 FALSE Date +Date 15374 FALSE Date +Date 14735 FALSE Date +Date 15936 FALSE Date +Date 13548 FALSE Date +Date 14005 FALSE Date +Date 14110 FALSE Date +Date 14279 FALSE Date +Date 15205 FALSE Date +Date 16735 FALSE Date +Date 16254 FALSE Date +Date 16476 FALSE Date +Date 13274 FALSE Date +Date 14370 FALSE Date +Date 14910 FALSE Date +Date 14545 FALSE Date +Date 16195 FALSE Date +Date 16300 FALSE Date +Date 16386 FALSE Date +Date 13814 FALSE Date +Date 13379 FALSE Date +Date 16671 FALSE Date +Date 14180 FALSE Date +Date 16105 FALSE Date +Date 13449 FALSE Date +Date 16387 FALSE Date +Date 16559 FALSE Date +Date 13913 FALSE Date +Year 2010 FALSE integer +Year 2013 FALSE integer +Year 2014 FALSE integer +Year 2006 FALSE integer +Year 2012 FALSE integer +Year 2011 FALSE integer +Year 2015 FALSE integer +Year 2007 FALSE integer +Year 2008 FALSE integer +Year 2009 FALSE integer +Period Winter FALSE character +Period Spring FALSE character +Period Summer FALSE character +Period Fall FALSE character diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-octave.pdf Binary file test-data/AalborgWWTPs-octave.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-octave.png Binary file test-data/AalborgWWTPs-octave.png has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-octave.svg --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-octave.svg Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,1247 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+ +Minimum reads +Number of distinct OTU's + + diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate-color-shape-frame.pdf Binary file test-data/AalborgWWTPs-ordinate-color-shape-frame.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate-envfit-factor.pdf Binary file test-data/AalborgWWTPs-ordinate-envfit-factor.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate-envfit-num.pdf Binary file test-data/AalborgWWTPs-ordinate-envfit-num.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate-label-traj-group.pdf Binary file test-data/AalborgWWTPs-ordinate-label-traj-group.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate-label-traj.pdf Binary file test-data/AalborgWWTPs-ordinate-label-traj.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate-nmds.pdf Binary file test-data/AalborgWWTPs-ordinate-nmds.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate-rda.pdf Binary file test-data/AalborgWWTPs-ordinate-rda.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate-screeplot.pdf Binary file test-data/AalborgWWTPs-ordinate-screeplot.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate-species.pdf Binary file test-data/AalborgWWTPs-ordinate-species.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-ordinate.pdf Binary file test-data/AalborgWWTPs-ordinate.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-otu_network-color_by.pdf Binary file test-data/AalborgWWTPs-otu_network-color_by.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-otu_network.pdf Binary file test-data/AalborgWWTPs-otu_network.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-rankabundance-nondefault.pdf Binary file test-data/AalborgWWTPs-rankabundance-nondefault.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-rankabundance.pdf Binary file test-data/AalborgWWTPs-rankabundance.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-rarecurve-color.pdf Binary file test-data/AalborgWWTPs-rarecurve-color.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-rarecurve-facet.pdf Binary file test-data/AalborgWWTPs-rarecurve-facet.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-rarecurve.pdf Binary file test-data/AalborgWWTPs-rarecurve.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-subset_samples.rds Binary file test-data/AalborgWWTPs-subset_samples.rds has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-subset_taxa.rds Binary file test-data/AalborgWWTPs-subset_taxa.rds has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-taxonomy.list --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs-taxonomy.list Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,495 @@ +k__Bacteria +p__Firmicutes +p__Bacteroidetes +p__Proteobacteria +p__Actinobacteria +p__Hydrogenedentes +p__Parcubacteria +p__Planctomycetes +p__Acidobacteria +p__Chloroflexi + +p__Saccharibacteria +p__Candidate division SR1 +p__Cyanobacteria +p__Synergistetes +p__Deinococcus-Thermus +p__Chlorobi +p__Verrucomicrobia +p__GOUTA4 +p__Nitrospirae +p__WCHB1-60 +p__Elusimicrobia +p__SM2F11 +p__TM6 +p__Armatimonadetes +p__Fusobacteria +p__Tenericutes +p__Lentisphaerae +p__Microgenomates +c__Clostridia +c__Cytophagia +c__Betaproteobacteria +c__Actinobacteria +c__Gammaproteobacteria +c__Deltaproteobacteria +c__Bacilli +c__ +c__Sphingobacteriia +c__Planctomycetacia +c__Holophagae +c__Chloroflexia +c__Caldilineae + +c__Anaerolineae +c__Flavobacteriia +c__Negativicutes +c__Alphaproteobacteria +c__Unknown Class +c__Cyanobacteria +c__Synergistia +c__Thermoleophilia +c__Acidimicrobiia +c__Bacteroidia +c__Phycisphaerae +c__WCHB1-50 +c__Deinococci +c__Ignavibacteria +c__Verrucomicrobiae +c__Coriobacteriia +c__TA18 +c__Acidobacteria +c__Nitrospira +c__Chlorobia +c__Elusimicrobia +c__Erysipelotrichia +c__BSV13 +c__Thermomicrobia +c__OPB35 soil group +c__Fusobacteriia +c__Mollicutes +c__PBS-III-20 +c__Chloroplast +o__Clostridiales +o__Cytophagales +o__Nitrosomonadales +o__Micrococcales +o__Xanthomonadales +o__Desulfobacterales +o__Bacillales +o__ +o__Sphingobacteriales +o__Planctomycetales +o__Holophagales +o__Propionibacteriales +o__Chloroflexales +o__PeM15 +o__Caldilineales +o__Rhodocyclales + +o__Myxococcales +o__Lactobacillales +o__Anaerolineales +o__Flavobacteriales +o__Selenomonadales +o__Rhodospirillales +o__Unknown Order +o__SubsectionIII +o__Burkholderiales +o__Rickettsiales +o__Rhizobiales +o__Synergistales +o__Gaiellales +o__Acidimicrobiales +o__Bacteroidales +o__Phycisphaerales +o__WCHB1-50 +o__Thermales +o__Ignavibacteriales +o__Bdellovibrionales +o__Verrucomicrobiales +o__Coriobacteriales +o__Subgroup 6 +o__Nitrospirales +o__WD2101 soil group +o__Actinomycetales +o__Chlorobiales +o__Subgroup 10 +o__Lineage IIb +o__Oligoflexales +o__Solirubrobacterales +o__Erysipelotrichales +o__Corynebacteriales +o__JG30-KF-CM45 +o__FW73 +o__Fusobacteriales +o__Mollicutes RF9 +o__Neisseriales +o__GR-WP33-30 +f__Lachnospiraceae +f__Ruminococcaceae +f__Cytophagaceae +f__Nitrosomonadaceae +f__Intrasporangiaceae +f__Xanthomonadaceae +f__Desulfobacteraceae +f__Planococcaceae +f__ +f__Dermatophilaceae +f__AKYH767 +f__Planctomycetaceae +f__Holophagaceae +f__Propionibacteriaceae +f__Roseiflexaceae +f__PeM15 +f__Caldilineaceae +f__Rhodocyclaceae + +f__Blfdi19 +f__Lactobacillaceae +f__Anaerolineaceae +f__Flavobacteriaceae +f__Veillonellaceae +f__Acetobacteraceae +f__mle1-27 +f__SBR2060 +f__FamilyI +f__Microbacteriaceae +f__Saprospiraceae +f__Comamonadaceae +f__TK34 +f__Bradyrhizobiaceae +f__Synergistaceae +f__Desulfobulbaceae +f__BVA77 +f__env.OPS 17 +f__Nocardioidaceae +f__DUNssu044 +f__Prevotellaceae +f__Family XII +f__Phycisphaeraceae +f__Chitinophagaceae +f__WCHB1-50 +f__Hyphomicrobiaceae +f__Thermaceae +f__Carnobacteriaceae +f__PHOS-HE36 +f__Family XIII +f__Sandaracinaceae +f__Bdellovibrionaceae +f__Mitochondria +f__Verrucomicrobiaceae +f__Coriobacteriaceae +f__Nordellaceae +f__Clostridiaceae 1 +f__Peptostreptococcaceae +f__Holosporaceae +f__Nitrospiraceae +f__Porphyromonadaceae +f__Actinomycetaceae +f__Family XI +f__Chlorobiaceae +f__NS9 marine group +f__Rhodospirillales Incertae Sedis +f__ABS-19 +f__Haliangiaceae +f__Bacillaceae +f__480-2 +f__Erysipelotrichaceae +f__Acidimicrobiaceae +f__Bacteroidaceae +f__Nocardiaceae +f__bacteriap25 +f__Christensenellaceae +f__Rhodospirillaceae +f__Beutenbergiaceae +f__Leptotrichiaceae +f__Oligoflexaceae +f__Neisseriaceae +f__AKIW1012 +f__Microthricaceae +f__OPB56 +g__Acetitomaculum +g__Ruminococcaceae UCG-005 +g__Dyadobacter +g__Nitrosomonas +g__Tetrasphaera + +g__Desulforegula +g__Rummeliibacillus +g__ +g__Fusicatenibacter +g__Ruminiclostridium 1 +g__uncultured +g__Brooklawnia +g__Sulfuritalea +g__Lactobacillus +g__Flavobacterium +g__Acidicaldus +g__Candidatus Defluviifilum +g__Ruminococcaceae UCG-010 +g__SBR2113 +g__Subdoligranulum +g__Ramlibacter +g__Bosea +g__Desulfobulbus +g__Nocardioides +g__Fusibacter +g__SM1F10 +g__Hyphomicrobium +g__Meiothermus +g__Trichococcus +g__oca15 +g__Simplicispira +g__Sandaracinus +g__OM27 clade +g__Collinsella +g__MNG7 +g__Roseomonas +g__Pirellula +g__Clostridium sensu stricto 1 +g__Acetoanaerobium +g__Nitrospira +g__Propioniciclava +g__Parabacteroides +g__Actinomyces +g__Aeromicrobium +g__Clostridium sensu stricto 6 +g__Reyranella +g__Proteiniclasticum +g__B1-K1A-105 +g__Prevotellaceae UCG-004 +g__Haliangium +g__Ureibacillus +g__Ruminococcus 2 +g__CYCU-0281 +g__Parafilimonas +g__Aestuariimicrobium +g__Diaminobutyricimonas +g__K2-78 +g__Erysipelatoclostridium +g__CL500-29 marine group +g__Bacteroides +g__Tessaracoccus +g__Gordonia +g__Senegalimassilia +g__Atopobium +g__Proteiniphilum +g__Uliginosibacterium +g__WCHB1-50 +g__Christensenellaceae R-7 group +g__Fodinibacter +g__Defluviicoccus +g__Acidovorax +g__Salana +g__Propionimicrobium +g__Litorilinea +g__Faecalitalea +g__Ruminiclostridium 5 +g__Rivicola +g__[Eubacterium] coprostanoligenes group +g__Lewinella +s__ + +s__sublineage I +s__cluster I +OTU_8735 +OTU_13382 +OTU_5516 +OTU_8315 +OTU_10522 +OTU_11040 +OTU_7263 +OTU_13379 +OTU_1418 +OTU_556 +OTU_6869 +OTU_10171 +OTU_2830 +OTU_4232 +OTU_12831 +OTU_613 +OTU_3625 +OTU_3605 +OTU_11148 +OTU_656 +OTU_4382 +OTU_3834 +OTU_13127 +OTU_4528 +OTU_4485 +OTU_12265 +OTU_11820 +OTU_4093 +OTU_8360 +OTU_15123 +OTU_11928 +OTU_11334 +OTU_4511 +OTU_3265 +OTU_2991 +OTU_522 +OTU_11832 +OTU_6358 +OTU_3611 +OTU_1408 +OTU_7471 +OTU_14124 +OTU_13012 +OTU_8113 +OTU_11414 +OTU_2232 +OTU_13504 +OTU_173 +OTU_11006 +OTU_9035 +OTU_8165 +OTU_1707 +OTU_4805 +OTU_7801 +OTU_6106 +OTU_9681 +OTU_4039 +OTU_4338 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+OTU_8245 +OTU_10847 +OTU_1151 +OTU_1998 +OTU_10321 +OTU_4721 +OTU_6237 +OTU_1972 +OTU_11364 +OTU_1816 +OTU_14842 +OTU_6533 +OTU_8887 +OTU_12690 +OTU_3097 +OTU_3257 +OTU_3161 +OTU_11903 +OTU_7508 +OTU_10969 +OTU_1801 +OTU_3488 +OTU_933 +OTU_3824 +OTU_777 +OTU_3169 +OTU_12385 +OTU_1496 +OTU_11294 +OTU_1968 +OTU_8832 +OTU_8652 +OTU_13621 +OTU_3043 +OTU_10760 +OTU_14173 +OTU_10746 +OTU_284 +OTU_5049 +OTU_2397 +OTU_2913 +OTU_9512 diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-timeseries-group.pdf Binary file test-data/AalborgWWTPs-timeseries-group.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-timeseries-tax.pdf Binary file test-data/AalborgWWTPs-timeseries-tax.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-timeseries.pdf Binary file test-data/AalborgWWTPs-timeseries.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-venn-group.pdf Binary file test-data/AalborgWWTPs-venn-group.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs-venn.pdf Binary file test-data/AalborgWWTPs-venn.pdf has changed diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs.fa Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,1879 @@ +>OTU_8735 +gatgaacgct ggcggcgtgc ctaacacatg caagtcgagc gatggcgtac taatggaaga +agcttcggca gaaaaccggt gtacgccaga gcggcggatg ggtgagtaac gcgtggacaa +cctgccctgc actgggggat aacagctgga aacggctgtt aataccgcat atgcgcacga +tgccgcatgg cagagggcgg aaagatttat cggtgcagga tgggtccgcg tcggattagc +cagttggcgg ggtaacggcc caccaaagcg atgatccgta gccggcctga gagggcgatc +ggccacattg ggactgagac acggcccaaa ctcctacggg aggcagcagt gggggatatt +gcacaatggg ggaaaccctg atgcagcgac gccgcgtgag cgatgaagtg cttcggcatg +taaagctcta tcagcgggga agaagatgac ggtacccgac taagaagccc cggctaacta +cgtg +>OTU_13382 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgaac ggacgaggcc ccttcgggga +ccgagttagt ggcgaacggg tgagtaacgc gtgagcaacc tgcctttcag tgggggacaa +cagttggaaa cgactgctaa taccgcataa aactctaaga ggacatcctc agtgagtcaa +agatttattg ctgaaagatg ggctcgcgtc tgattagcta gttggcgggg taacggccca +ccaaggcgac gatcagtagc cggactgaga ggttgaacgg ccacattggg actgagatac +ggcccagact cctacgggag gcagcagtgg ggaatattgg gcaatggggg aaaccctgac +ccagcaacgc cgcgtgaagg aagaaggctt tcgggttgta aacttctttt accagggacg +aaggacgtga cggtacctgg agaaaaagcc acggctaact acgtg +>OTU_5516 +gatgaacgct agcggcaggc ttaatacatg caaggcgagg gggcatttcg gtgtcaccgt +cgtacgggtg cgtaacgcgt atgcaaccta cctttaactg ggggatagcc cggggaaacc +cggattaata ccgcatgaca ctgtgatttc acctgagatt ataagttaaa gatttatcgg +ttaaagatgg gcatgcgttc gattagctag ttggcggggt aatggcccac caaggcgacg +atcgataggg gagctgagag gttgatcccc cacacgggca ctgagatacg ggcccgactc +ctacgggagg cagcagtagg gaatattggg caatggatgc aagtctgacc cagccatgcc +gcgtgccgga cgaaggccct cagggttgta aacggctttt attcgggaag aagagcaggg +atgcgtcctt gtgtgacggt accgaatgaa taagcaccgg ctaactccgt g +>OTU_8315 +attgaacgct ggcggcatgc tttacacatg caagtcgaac ggcagcacga gtgcttgcac +ttggtggcga gtggcggacg ggtgagtaat acatcggaac gtatcctaaa gtgggggata +acgcatcgaa agatgtgcta ataccgcata tactctgagg aggaaagtag gggatcgaaa +gaccttatgc ttttggagcg gccgatgtct gattagctag ttggtaaggt aatggcttac +caaggcaacg atcagtagtt ggtctgagag gacgaccagc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaattttgga caatgggcgc aagcctgatc +cagcaatgcc gcgtgagtga agaaggcctt cgggttgtaa agctctttca gttgagaaga +aaagattgta actaataatt gcgatccann acngnatcaa canannannc accnnctaac +tacgtg +>OTU_10522 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtgacgagg agcttgctcc +tctgatcagt ggcgaacggg tgagtaacac gtgagtaacc tgccccagac tctgggataa +cagttggaaa cagctgctaa taccggatac gagacggaga ggcatctcta ccgtctggaa +agtttttcgg tctgggatgg actcgcggcc tatcagcttg ttggtgaggt aatggctcac +caaggcgacg acgggtagcc ggcctgagag ggcgaccggc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaatattgca caatgggcgc aagcctgatg +cagcgacgcc gcgtgaggga tgacggcctt cgggttgtaa accgctttcg acagggaaga +aaatgacggt acctgtagaa gaagccccgg ccaactacgt g +>OTU_11040 +attgaacgct ggcggcatgc ctaacacatg caagtcgaac ggcagcgcgg gtagcaatac +ctggcggcga gtggcggacg ggtgagtaat gcatcgggat ctacccagac gtgggggata +acgtagggaa acttacgcta ataccgcata cgtcctacgg gagaaagcgg gggctcgcaa +gacctcgcgc ggttggacga accgatgtgc gattagctag ttggtggggt aatggcccac +caaggcgacg atcgctagct ggtctgagag gatgatcagc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaatattgga caatgggcgc aagcctgatc +cagcaatgcc gcgtgtgtga agaaggcctt cgggttgtaa agcactttta tcaggagcga +aatgccattg gttaataccc ggtggagctg acggtacctg aggaataagc accggctaac +ttcgtg +>OTU_7263 +aatgaacgct ggcggcgtgc ttaacacatg caagtcgtac gcgaaaggcg ctttcgggtg +ctgagtagag tggcgcacgg gtgagtaacg cgtgggtaat ctacccttgg atcttggata +acacatcgaa aggtgtgcta atacgggatg aagtctgcgg agatgcgttt ttgcagatga +aaggccgcgc aagcggttgt ccgaggatga gcctgcgtcc cattagctag ttggcggggt +aaaggcccac caaggctgag atgggtagct ggtctgagag gatgatcagc cacactggaa +ctggaacacg gtccagactc ctacgggagg cagcagtgag gaattttgcg caatggggga +aaccctgacg cagcaacgcc gcgtgagtga tgaaggcctt cgggtcgtaa agctctgtcg +agtgggaaga aaccgttcag attaataacc tgaaccttga cggtaccact aaaggaagca +ccggctaact ccgtg +>OTU_13379 +gacgaacgct ggcggcgtgc ctaatacatg caagtcgagc gcatgacgag gagcttgctc +ctctgattga gcggcggacg ggtgagtaac acgtgggcaa cctgccctgt agacggggat +aacttcggga aaccggagct aataccggat aatcctcttc cccacatggg gaagagttga +aaggcgcttt tgcgtcacta caggatgggc ccgcggtgca ttagctagtt ggtggggtaa +cggcctacca aggcgacgat gcatagccga cctgagaggg tgatcggcca cattgggact +gagacacggc ccaaactcct acgggaggca gcagtaggga atcttccaca atggacgaaa +gtctgatgga gcaacgccgc gtgagtgatg aaggttttcg gatcgtaaaa ctctgttgta +agggaagaac cagtacgtca ggcaatggac gtaccttgac ggtaccttat tagaaagcca +cggctaacta cgtg +>OTU_1418 +aatgaacgct ggcggcgtgg attaggcatg caagtcgaac gggcattagc aatagtgtca +gtggcgacct ggtcagtaca aattgggtta cgtgcccgga agtgggggat aacgccgtga +aaacggcgct aataccgcat gtggacgaaa gtctaaagca gcagtgcgct tccggatcgg +cccaatcctc attagcttgt tggcggtgta aaagaccacc aaggcatcga tgagtaggcg +acgtgagagc gcgaccgccg acacgaggac tgagatacgg cctcgactcc tacggggggc +agcagtctag aagcttcgtc aatgggcgaa agcctgaacg agcgacgccg cgtgtgggat +gacgcccttt ggggtgtaaa ccactttcga ctgggaagaa ggtccggatg gtgaattcgg +atttgacggt accagtggaa gaagcaccgg ctaactccgt g +>OTU_556 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgagc gaagcggctg aattgattct +tcggatgatt ttcagttgac tgagcggcgg acgggtgagt aacgcgtggg tgacctgccc +cataccgggg gataacagct ggaaacggct gctaataccg cataagcgca cagagctgca +tggctcggtg tgaaaaactc cggtggtatg ggatgggccc gcgtctgatt aggcagttgg +cggggtaacg gcccaccaaa ccgacgatca gtagccggcc tgagagggcg accggccaca +ttgggactga gacacggccc aaactcctac gggaggcagc agtggggaat attgcacaat +gggggaaacc ctgatgcagc gacgccgcgt gagcgaagaa gtatttcggt atgtaaagct +ctatcagcag ggaagataat gacggtacct gactaagaag ccccggctaa ctacgtg +>OTU_6869 +gatgaacgct ggcggcgtgg ataaggcatg caagtcaagg ggcccgcaag ggcaccggca +gacgaggtag taataagtag gtaccaaccc caaagtcagg gatacctcat cgaaagatga +gttaatactt gatggtctct tcggagtaaa gatttatcgc tttgggatgg gcctgctcgg +tatcagctag ttggtaaggt aacggcttac caaggctatg acacctaggg gacctgagag +ggtgaccccc accgatggaa ctgagacacg gtccatacac ctacgggtgg ccgcagtcga +gaatcttccg caatgggcga aagcctgacg gagcgacgcc gcgtgattga tgaagctctt +cggagcgtaa aaatcttttg ccagggaaaa agtatattga ttgtacttgg cgaataagag +gttgctaaac tcgtg +>OTU_10171 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgagc ggagatatta gtaatagtat +cttagcggcg gacgggtgag taacgcgtgg gcaacctacc ttcaactggg ggataacaca +gggaaacttg tgctaatacc gcataacatc gctaagtgac atcacttaat gatcaaagga +gtaatccggt ggaagatggg cccgcgtccg attagctagt tggtgatgta acggaccacc +aaggcgacga tcggtagccg aactgagagg ttgatcggcc acattgggac tgagacacgg +cccagactcc tacgggaggc agcagtgggg aatattgcgc aatggaggga actctgacgc +agcaacgccg cgtgaaggat gaaggctttc gggttgtaaa cttctttgat gagggacgaa +acaaatgacg gtacctcaaa aacaagccac ggctaactac gtg +>OTU_2830 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac gatgaagccc tttcgggggt +ggattagtgg cgaacgggtg agtaacacgt gagtaacctg cccttcactt ctggataact +ctcggaaacg ggggctaata caggatatga ctcaagcctg catgggtttg ggtggaaaga +ttttttggtg ggggatgggc tcgcggccta tcagcttgat ggtggggtga tggcctacca +tggcgacgac gggtagccgg cctgagaggg cgatcggcca cactgggact gagacacggc +ccagactcct gcgggaggca gcagtgggga atattgcaca atgggcgaaa gcctgatgca +gcgacgccgc gtgagggatg aaggccttcg ggttgtaaac ctctttcgtc agggaagaag +cctttcgggg tgacggtacc tggagaagaa gcaccggcta actacgtg +>OTU_4232 +gattaacgct agcggcaggc ctaatacatg caagtcgagg ggcagcaggg tgtagcaata +catcgctggc gaccggcgca cgggtgcgta acacgtatgc aacctacctt taactgggga +atagccctcc gaaaggagga ttaacaccgc ataacatcac gagacggcat cgccttgtga +tcaaacctcc gggggttaaa gatgggcatg cgtccgatta gctagttggc ggggtaacgg +cccaccaagg cgacgatcgg tagggggtct gagaggatga tcccccacac tggtactgag +acacggacca gactcctacg ggaggcagca gtaaggaata ttggacaatg gtcgcaagac +tgatccagcc atgccgcgtg caggatgaac gatctatgat ctgtaaactg cttttgttcg +ggaataaacc ccttcacgtg tggagggctg aatgtaccga aagaataagg gtcggctaac +ttcgtg +>OTU_12831 +aatgaacgtt ggcggcgtgg attaggcatg caagtcgagc gagaaccgta gcaatacggg +gacagcggcg aaagggagag gaccacgtgg atacgtaccc tcgggttcag gatagccatg +ggaaactatg ggtaatactg aatgacatct ccggatcaaa ggtgagattc cgcccgggga +gcggtccgcg tcctattagc tagttggtga ggtaacggct caccaaggcg aagatgggta +tgggatgtga gagcatgatc ccactcactg ggactgagac actgcccaga cacctacggg +tggctgcagt cgagaatctt cggcaatggg ggcaaccctg accgagcgac gccgcgtgcg +agatgaaggc cttcgggttg taaatcgctg tcagagggga ggaaatgtcg gtgggttctc +ccatcgattt gacctatcct cagaggaagg acgggctaag ttcgtg +>OTU_613 +aatgaacgct ggcggcgtgc ctaacacatg caagtcgaat gtgccgcaag gtgcatggca +gacgggtgag taacgcgtgg gcaatctacc ttctcgtggg gaataacgct ccgaaaggag +tggtaatacc gcataagacc gatggctggg atgctgtcgg tgaaacctgg ggaccgcaag +gcctggggcg agaagaggag cctgcgtctg attagctagt tggtggggta atggcctacc +aaggcatcga tcagtagccg gcctgagagg gtgatcggcc acactggaac tgagacacgg +tccagactcc tacgggaggc agcagtgggg aattttgcgc aatgggcgaa agcctgacgc +agcaacgccg cgtgggtgat gaaggtcttc ggatcgtaaa accctgtcgt tggggacgaa +ggtagggcgg ttaatagccg ttttgcttga cggtacccgg agaggaagcc ccggctaact +ctgtg +>OTU_3625 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtaaggccc ttcggggtac +acgagtggcg aacgggtgag taacgcgtga gtaacctgcc cttgactctg ggataacaga +tagaaatgtc tgctaatacc ggatactcag cctcgcaggc atctgtgagg ctggaaagct +ccggcggtca aggatggact cgcgtcctat cagcttgttg gtggggtaat ggcctaccaa +ggcgacgacg ggtagccggc ctgagagggc gaccggccac attgggactg agatacggcc +caaactccta cgggaggcag cagtggggaa tattgcacaa tgggcgaaag cctgatgcag +caacgccgcg tgcgggatga cggccttcgg gttgtaaacc gctttcagca gggacgaagc +gcaagtgacg gtacctgcag aagaagcacc ggctaactac gtg +>OTU_3605 +gacgaacgct ggcggcgtgc ctaatgcatg caagtcgcac gcgccgcctt cgggcggtga +gtggcgcacg gctgaggatc acgtgggaac atgcctcgtg gtgggggaca acagcgcgaa +agcgctgcta atcccgcata cgctcgcgca agcgaggaaa gcggtaacgc gccgcgagag +tggcccgcgg cccatcaggt cgtaggtggg gtaacggcct acctagccga tgacgggtag +ctggtctgtg aggacagaca gccagactgg gactgagaca cggcccagac tcctacggga +ggcagcagca aggaattttc gtcaatgggc gcaagcctga acgagcaacg ccgcgtggag +gatgacggcc ttcgggttgt aaactccttt tgggggggac gataatgacg gtaccccttg +aataaggctc ggctaactct gtg +>OTU_11148 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtgacgcgc cttcgggcgc +tgatcagtgg cgaacgggtg agtaacacgt gggcaacctg cccctagctc tgggataacc +cctcgaaaga ggagctaata ccggatatca ccgctccaga catctggtgc ggttgaaagt +ttttcggcta gggatgggcc cgcggcctat cagcttgttg gtggggtaac ggcccaccaa +ggcgacgacg ggtagccggc ctgagagggc gaccggccac actgggactg agacacggcc +cagactccta cgggaggcag cagtggggaa tattgcgcaa tgggcgaaag cctgacgcag +caacgccgcg tgagggacga cggcccttgg gttgtaaacc tctttcagca gggacgaaaa +tgactgtacc tgcagaagaa gcgccggcta actacgtg +>OTU_656 +gatgaacgct ggcggcgtgc ctaacacatg taagtcgaac gtgagagact agcaatagtc +ttgaaagtgg cgaacgggtg agtaacacgt aggaacctgc cctggagtgg gggataacca +ctggaaacgg tggctaatac cgcatacgcc tgtgaagatg ggagtctttg cagggaaaga +gcgattgctc caggaggggt ctgcgtccga ttagctagat ggtggggtaa aggcctacca +tggcgatgat cggtagctgg tctgagagga tgatcagcca cacgggaact gagacacggt +cccgactcct acggggggca gcagtgagga atattgcaca atgggggaaa ccctgatgca +gcaacgccgc gtggaggatt gacggtcttt ggattgtaaa ctccttttct gtgggacgag +cgaggacggt accacaggaa tcagtcacgg ctaactacgt g +>OTU_4382 +attgaacgct ggcggaatgc tttacacatg caagtcgagc ggcagcgcgg gggcaaccct +ggcggcgagc ggcgaacggg tgagtaacat atcggaacgt accctgtcgt gggggataac +acatcgaaag gtgtgctaat accgcatacg acctgagggt gaaagcgggg gatcgcaaga +cctcgcgcga caggagcggc cgatatcgga ttagctagtt ggtgaggtaa aggctcacca +aggcgacgat ccgtagcggg tctgagagga cgacccgcca cactggaact gagacacggt +ccagactcct acgggaggca gcagtgggga attttggaca atgggggcaa ccctgatcca +gccattccgc gtgagtgaag aaggccttcg ggttgtaaag ctctttcagc aggaacgaaa +cggtggcccc taatacgggc tactaatgac ggtacctgaa gaagaagcac cggctaacta +cgtg +>OTU_3834 +gatgaacgct agcggcaggc ctaatacatg caagtcgaac ggtaaggccc tttcgggggt +acacgagtgg cggacgggtg cgtaacgcgt atgcaacata ccttccagcg ggggatatgc +cagggaaact tggtgcaata ccccatggta tcattgtttc acatgggacg atgattaaaa +ctccggtgct gggagattgg catgcgtgac attagctagt tggcggggta acggcccacc +aaggcgacga tgtctagctg gtctgagagg atgatcagcc acactgggac tgagacacgg +cccagactcc tacgggaggc agcagtaggg aatattggac aatgggggga accctgatcc +agccatgccg cgtgagggaa gaaggtcctc tggattgtaa acctcttttg gcgggggaca +aacctgtgct acacgcacag ctgagggtac ccgcagaata agcaccggct aactccgtg +>OTU_13127 +gacgaacgct ggcggcatgc ctaacacatg caagtcgaac ggagaatagt attaagttta +cttgatacta aacttagtgg cggacgggtg agtaacgcgt ggataacctg cctgttagac +cgggataact tcgggaaacc gtagctaata ccggatacag actatatact gcatagtaaa +tagttgaaaa gaatattgct aacagatggg tccgcgtccc attagctagt tggtggggta +acggcctacc aaggcagcga tgggtagccg gcctgagagg gtggacggcc acactgggac +tgagacacgg cccagactcc tacgggaggc agcagtgggg aatattccgc aatgggggga +accctgacgg agcaatgccg cgtgagggac gaatgccttc gggttgtaaa cctttgttct +atgggaagat aatgacggta ccataggagt aagccccggc taactacgtg +>OTU_4528 +gatgaacgct agcgggaggc ctaatacatg caagtcgaac ggtaaggtcc ttcgggatac +acgagtggca aacgggtgcg taacgcgtac ggaacatgcc tctatcagag agatagccct +gggaaactgg gtataatacc tcatagtatt gtattgccgc atggtattta caattaaagc +tccggcggat agagattgtc gtgcgtccca ttagctagtt ggtaaggtaa cggcttacca +aggcgacgat gggtaactgg tttgagagga tgatcagtca cactggaact gagacacggt +ccagactcct acgggaggca gcagtaggga atattggaca atggacgcaa gtctgatcca +gccatcccgc gtgcaggatt aaggccctct gggttgtaaa ctgcttttat tagagaagaa +aacctcagat ttatctgaac ttgacggtat ctaatgaata agcaccggct aactccgtg +>OTU_4485 +aacgaacgct ggcggcatgc ttaacacatg caagttgtgc gagaaccaag gggcttgctc +tttggggaaa gcagcgcacg ggtgagtaac gcgtggataa cgtgccctag ggttggggat +aacccgccga aaggtggact aataccgaat gtgttccaat aaggtgcgcc tatttggaag +aaagcggggc aacccgcgcc caaggatcgg tccgcgttcc atcagctagt tggtgaggta +atggctcacc aaggctacga cggatagctg gtctgagagg atgatcagcc acactgggac +tgagatacgg cccagactcc tacgggaggc agcagtgggg aatattggtc aatgggcgaa +agcctgaacc agcaatgccg cgtgagtgat gaaggcctta gggttgtaaa gctctgtcag +tgggaacgaa taagtcgatt aatacccgat gatgacggta cccacaaagg aagcaccggc +taactctgtg +>OTU_12265 +gacgaacgct ggcggcgtgc ctaatacatg caagtcgagc gagcggaact aacagattta +cttcggtaat gacgttagga aagcgagcgg cggatgggtg agtaacacgt ggggaacctg +ccccatagtc tgggatacca cttggaaaca ggtgctaata ccggataaga aagcagatcg +catgatcagc ttttaaaagg cggcgtaagc tgtcgctatg ggatggcccc gcggtgcatt +agctagttgg taaggtaaag gcttaccaag gcgatgatgc atagccgagt tgagagactg +atcggccaca ttgggactga gacacggccc aaactcctac gggaggcagc agtagggaat +cttccacaat ggacgcaagt ctgatggagc aacgccgcgt gagtgaagaa ggttttcgga +tcgtaaagct ctgttgttgg tgaagaagga tagaggtagt aactggcctt tatttnacng +naatcaacna gnanntcacn nctaactang tg +>OTU_11820 +gatgaacgct ggcggcgtgc ctaacacatg caagtcgagc ggagataaga agagtacttg +tacaattttt atcttagcgg cggacgggtg agtaacacgt gagtaacctg cctttcactg +gggaataaca tcgagaaatc ggtgctaata ccgcataatg tcaagacatc acctggtgac +ttgaccaaag gagaaatccg gtaaaagatg gactcgcgtc cgattaggta gttggtgagg +taatggccca ccaagcctac gatcggtagc cgaactgaga ggttgatcgg ccacattggg +actgagacac ggcccagact cctacgggag gcagcagtgg ggaatattgg gcaatgggcg +aaagcctgac ccagcaacgc cgcgtgaagg aagaaggtct tcggattgta aacttctttg +acgagggacg aaaaaaatga cggtacctcg aaaacaagcc acggctaact acgtg +>OTU_4093 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtgatagca atatcacagt +ggcgcacggg tgaggaacac gtagctcatc tgccccaaag tgtgggataa cggtccgaaa +ggattgctaa taccgcataa gctcccggac tgtagaggtc tgagagaaaa ggcgcaagtc +gctttgggag gaggctgcgg cccatcaggt agttggtgtg gtaacggcgc accaagccaa +cgacgggtag gggacctgag agggtgaccc cccacactgg gactgagaca cggcccagac +tcctacggga ggcagcagtg aggaatattg cccaatggac gcaagtctga ggcagcgacg +ccgcgtgggt gaagaaggcc ttcgggtcgt aaagcccttt tctgtgtgac gagaacggac +ggtagcacag gaaaaagtct cggctaacta cgtg +>OTU_8360 +gatgaacgct agcggcaggc ttaacacatg caagtcgagg ggtaaatagt tttcggatta +ttgagaccgg cgcacgggtg cgtaacgcgt atgcaatcta ccttttacag agggatagcc +cagagaaatt tggattaata cctcatagta tagttgaatg gcatcattta attattaaag +ttccaacggt aaaagatgag catgcgtccc attagttagt tggtaaggta acggcttacc +aagacaatga tgggtagggg tcctgagagg gagatccccc acactggtac tgagacacgg +accagactcc tacgggaggc agcagtgagg aatattggac aatgggcgca agcctgatcc +agccatgccg cgtgcaggaa gaagcatcta tggtgtgtaa actgcttttg tacgggaaga +aacatcacta cgtgtagtga cttgacggta ccgtaagaat aaggatcggc taactccgtg +>OTU_15123 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac gaggattttt atttcggtaa +aaatccgagt ggcaaacggg tgagtaacgc gtaggcaacc tgcctttctg atggggacaa +cagttcgaaa ggactgctaa taccgaatga cgtatatttc tcgcatgaga gacataccaa +agatggcctc tgaatatgct atcacagaaa gatgggcctg cgtctgatta gctggttggt +ggggtaacgg cctaccaagg cgacgatcag tagccggtct gagaggatga acggccacat +tgggactgag acacggccca gactcctacg ggaggcagca gtggggaatc ttccacaatg +gacgaaagtc tgatggagca acgccgcgtg agtgaagaag gttttcgaat cgtaaagctc +tgttgtcagg gacgaatgtt gagactgaga atattggttt caaatgacgg tacctgacga +ggaagccacg gctaactacg tg +>OTU_11928 +aatgaacgct ggcggcgtgc ttaacacatg caagtcgcac gagaacgctt ctgcttgcag +gggctagtaa agtggcgcac gggtgagtaa cgcgtgggta atctaccccc ggatctggga +taaccctccg aaaggggtgc taataccgga tgaagtcatt gagactgcgg ttttgatgat +gaaaggtggc ctctccatgg aagctactgt ttggggatga gcccgcgtac cattagctag +ttggtggggt aacggcctac caaggcagcg atggttagct ggtctgagag gatgatcagc +cacactggaa ctgacacacg gtccagactc ctacgggagg cagcagtgag gaattttgcg +caatgggggg aaccctgacg cagcaacgcc gcgtgagtga agaaggcctt cgggtcgtaa +agctctgtcg agtgggaaga acattttcat ggtgaacatc catggggatt gacggtacca +cagaaggaag caccggctaa ctccgtg +>OTU_11334 +agcgaacgct ggcggcatgc ttaacacatg caagtcgcac ggtcgggggc aacctcggca +gtggcggacg ggtgagtaac gcgtaggcat ctatccttgg atgggggaca accgtgggaa +actacggcta ataccgcatg aagcctgagg gctaaagctc gcgagagcgt ctggggcgga +gcctgcgtcc gattagctag ttggtggggt aaaggcctac caaggcgatg atcggtagct +ggtctgagag gatgatcagc cacactggga ctgagacacg gcccagactc ctacgggagg +cagcagtggg gaatattgga caatgggcgc aagcctgatc cagcaatgcc gcgtgggtga +agaaggtctt cggattgtaa agccctttcg acggggacga tgatgacggt acccgtagaa +gaagccccgg ctaacttcgt g +>OTU_4511 +agcgaacgtt agcggcgcgc ctaacacatg caagtcgcac gagaaagggc ttcggccccg +gtaaagtggc gcacgggtga gtaacacgtg ggcaacctgc ccaaccctgg gggataacct +gccgaaaggc gggctaatac cgcgtacgag ggctctactt cggtagggtt ctgaaagcag +gcctctgtat acaagcttgc ggggttggat gggcccgcgc tccatcagct agttggtgag +gtaagagctc accaaggcta cgacggatag ctggtctgag aggatgatca gccacactgg +aactgagaca cggtccagac tcctacggga ggcagcagtg gggaatcttg cgcaatgggc +gaaagcctga cgcagcgacg ccgcgtgggt gacgaaggcc ttcgggttgt aaagccctgt +ggggcgagac gaacagccag ggaacgaaca gctccttggt ttgacggtat cgccttagca +agcaccggct aactctgtg +>OTU_3265 +gatgaacgct ggcggcgtgc ctaatacatg caagtcgaac gcgataagca attatcgagt +ggcgaccggg tgagtaacac gtagctgatc taccttctac agggggataa cgtcccgaaa +gggatgctaa taccgcgtaa gctcggagga cttagaacct tccgaggaaa gccttagggc +ggtagaagag gaggctgcgt tccatcagct agttggtgag gtaaaggctc accaaggcga +cgacggatcg gggacctgag agggtgaccc cccacactgg tactgacaca cggaccagac +tcctacggga ggcagcagta aggaatattg cgcaatggac gaaagtctga cgcagcaacg +ccgcgtgcgg gatgaagggc ttcggctcgt aaaccgcttt tatcagggaa gagtaaggac +ggtacctgat gaataagtct cggctaacta cgtg +>OTU_2991 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggatgccctt tttgcagcaa +tgcttggggg gtgttagtgg cgaacgggtg agtaacacgt gaggaacctg ccttggagac +ggggataact 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tttgccaggg acgataatga cggtacctgg agaataagcc +ccggcaaact tcgtg +>OTU_4697 +agtgaacgct ggcggcatgc ttaacacatg caagtcgcac ggtcggggta actcggcagt +ggcggacggg tgaggaacgc gtagggatgt gtcctggggt gggggataac gttgggaaac +tgacgctaat accgcatgtg aactgaggtt caaagccgtg aggcgccatg ggagcaacct +gcgtccgatt aggtagttgg tggggtaatg gcctaccaag cctccgatcg gtagctggtc +tgagaggacg accagccaca ctgggactga gacacggccc agactcctac gggaggcagc +agtggggaat attggacaat gggcgcaagc ctgatccagc aatgccgcgt ggatgaagaa +ggtcttcgga ttgtaaagtc ctttcgacgg ggacgatgat gacggtaccc gtagaagaag +ccccggctaa cttcgtg +>OTU_6765 +gatgaacgct ggcggcgtgc ttaatacatg caagtcgaac gaaggaagta gcaatatttc +ctgagtggcg aacgggtgag taacgcgttg gtgacctgcc ccgaagcggg ggataacagt +tcgaaaggat tgctaatacc ccatgttgtc cgccggatta gaagccggtt gaccaaagga +gaaattcgct ttgggagggg cctgcgtccc atcagctcgt tggtagggta acggcctacc +aaggctacga cgggtagggg acctgagagg gtggcccccc acaatggaac tgaaacacgg +tccatacacc tacgggtggc agcagtaggg aatattggta atctgcgaaa gcgggaacca +gcaacgccgc gtgtgcgatg aaggccttcg ggtcgtaaag cactttttgg agggatgagg +aaggacagta cctccagaat aagtctcggc taactacgtg +>OTU_1066 +aatgaacgtt ggcggcgtgg attaggcatg caagtcgaac ggaccatggt agcaatatta +tggttagtgg cgcaagggag agtaatacgt aggtatttac cctggggtct gggatagcgg +cgggaaactg ccggtaatac cagatgatat ctccggatca aaggtgtgat tccgccctag +gagaagcctg cggtctatta gctagttggt agggtaacgg cctaccaagg caaagatgga +tatggggcgt gagagcgtgc ccccactcac tgggactgag acactgccca gacacctacg +ggtggctgca gtcgagaatc ttcggcaatg ggcgcaagcc tgaccgagcg acgccgcgtg +cgggatgaag gccttcgggt tgtaaaccgc tgtcgaaggg gaggaaatgc tagtgggttc +acccattagt ttgaccgatc cttggaggaa gggccggcta atctcgtg +>OTU_5907 +aatgaacgtt ggcggcgtgg attaggcatg caagtcgagc ggaaaggccc gcaagggtac +tcgagcggcg taagggacag taatgtatag gtacgtaccc tccggtctgg gatagctgcg +ggaaactgca attaatacca gataatgtct ccggaccaaa ggtgtgattc caccggggga +gcggcctata tcctattagc tagttggtgg ggtaacggct caccaaggca aagatgggta +gcaggtgtga gagcacgacc tgcgtcactg ggactgagaa ctgcccagac acctacgggt +ggctgcagtc gagaatcttc ggcaatgagc gcaagcttga ccgagcgacg ccgcgtgtgg +gatgaaggcc ttcgggttgt aaaccactgt cgagggggac gaaattctat ggggtactct +tcatagattg acagatccct ggaggaaggg tgggctaagt tcgtg +>OTU_4933 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgagc gatgaagctc cttcgggagt +ggattagcgg cggacgggtg agtaacacgt gggcaacctg ccttgtagag aggaatagcc +attcgaaagg atgattaata cctcataata ttgtagcttc gcatgaagca acaatcaaag +gagcaatcca ctacaagatg ggcccgcggc gcattagcta gttggtgagg taacggctca +ccaaggcgac gatgcgtagc cgacctgaga gggtgatcgg ccacattggg actgagacac +ggcccagact cctacgggag gcagcagtgg ggaatattgc acaatggggg aaaccctgat +gcagcaacgc cgcgtgagtg atgacggtct tcggattgta aagctctgtc ttcagggacg +ataatgacgg tacctgagga ggaagccacg gctaactacg tg +>OTU_8885 +gatgaacgcc ggcggtgtgc ctaatacatg caagtcgagc gcactggccc aacagaaatg +acgtgcttgc actgatttga cgttggattc ccagtgagcg gcggacgggt gagtaacacg +tgggcaacct gccccaaagc gggggataac atttggaaac aggtgctaat accgcataac +ttggaaaacc acatggtttt ccaataaaag atggtttcgg ctatcacttt gggatgggcc +cgcggtgcat tagctagttg gtaaggtaac ggcttaccaa ggcgatgatg catagccgag +ttgagagact gatcggccac aatggaactg agacacggtc catactccta cgggaggcag +cagtagggaa tcttccacaa tgggcgcaag cctgatggag caacaccgcg tgagtgaaga +agggtttcgg ctcgtaaaac tctgttgttg gagaagaacg tgcgtaagag taactgttta +cgcagtgacg gtatccaacc agaaagtcac ggctaactac gtg +>OTU_4226 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgaac gtgaggaggt agcaatatct +ctgaaagtgg cgcacgggtg agtaacacgt aggtaacctg ccctgaagcg ggggataaca +gttggaaacg gctgctaata ccgcatgaga ctgataagcc gggaggctta ttggtgaaaa +tcttggtgct tcaggagggg cctgcggccg attagctagt tggtggggta agagcctacc +aaggcgacga tcggtagctg gtctgagagg acgatcagcc acacgggaac tgagacacgg +tcccgactcc tacggggggc agcagtgagg aatattgggc aatgggcgaa agcctgaccc +agcaacgccg cgtggaggaa gacggccttc gggttgtaaa ctccttttac gggggaagag +gaaggacggt accccgagaa taagtcacgg ctaactacgt g +>OTU_1821 +aacgaacgct agcgggatgc ctcaaacatg caagtcgtac gcgaaagtct tcggatgagt +agagtggcgc acgggtgagt aacacgtagc taacataccc tttcgctggg gataactccg +ggaaaccgga gctaataccg aatgatctga 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ggtgcgtaac acgtatacaa tctgccttta acagggggat +agcccggaga aatccggatt aataccccat aacagtggag ttggcatcaa cttcacttaa +aagctccggc ggttagagat gagtatgcgt ctgattagtt tgttggtgag gtaacggctc +accaaggcta cgatcagtag gggatctgag aggactaccc cccacactgg tactgagaca +cggaccagac tcctacggga ggcagcagta aggaatattg gacaatgccc gcaagggtga +tccagccatg ccgcgtgcag gaagaaggcc ctatgggtcg taaactgctt ttgaacaaga +gaaaaccctc ctacgtgtag gaggctgata gtattgttag aataagcatc ggctaacttc +gtg +>OTU_3353 +agcgaacgct ggcggcatgc ctaacacatg caagtcgcac gccccgcaag gggagtggcg +gacgggtgag taacgcgtag ggatctgtcc cgaggtgggg gataactctg ggaaactaga +gctaataccg catgacacct gagggtcaaa ggcgcaagtc gccttgggag gaacctgcgt +ccgattagct agttggtggg gtaatggccc accaaggctg cgatcggtag ctggtctgag +aggatgatca gccacactgg gactgagaca cggcccagac tcctacggga ggcagcagtg +gggaatattg gacaatgggc gcaagcctga tccagcaatg ccgcgtgggt gaagaaggtc +ttcggattgt aaagcccttt cggcggggac gatgatgacg gtacccgcag aagaagcccc +ggctaacttc gtg +>OTU_7163 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac gaagtagcaa tacttagtgg +cggacgggtg cgtaacacgt gactaacttg cccaagactg tggaataacg gagggaaact +tccgctaata ccgcatgttg agcttaggtg gcatcaccgg agcttgaaag atttatcggt +cttggatagg gtcgcggcct attagcttgt tggtgaggta atggctcacc aaggcgacga +tgggtagctg gtctgagagg atgatcagcc acactgggac tgagatacgg cccagactcc +tacgggaggc agcagtgagg aatattgcgc aatgggcgaa agcctgacgc agcaacgccg +cgtgaaggat gaaggtgctc tgcattgtaa acttctgtag ggagggaaga aaacccactc +cgtgggcttg acggtacctc caaagtaagc accggctaat tccgtg +>OTU_541 +aatcaacgct ggcggcgtgc ctaacacatg caagtcgaac gcgaaagtgg agcaatccat +gagtagagtg gcaaacgggt gagtaacacg tgggtgacct gccttagagt gggggataac +gtcccgaaag ggacgctaat accgcataac atgctgcctt ttaagaggtg gacatcaaag +ccggggaccg caaggcctgg cgcttaaaga ggggcccgcg cctgattagc tagttggtgg +ggtaatggct caccaaggca acgatcagta tccggcctga gagggcggac ggacacactg +ggactgagac acggcccaga ctcctacggg aggcagcagt ggggaattgt tcgcaatggg +cgcaagcctg acgacgcaac gccgcgtgga ggatgaagat cttcgggttg taaactcctt +tcgatcgaga cgaatggccc ttgggctaac atcctgaggg agtgacggta ccgagagaag +aagccccggc taactccgtg +>OTU_1521 +gatgaacgct agcggcaggc ttaacacatg caagtcgagg ggtaggttac ttcggtaact +gagaccggcg cacgggtgcg taacgcgtat acaatctacc ttttacagag ggatagccca +gagaaatttg gattaatacc tcatagtatt tttgaatcgc atgatttgat tattaaagtt +ccaacggtaa aagatgagta tgcgtcccat tagctagatg gtaaggtaac ggcttaccat +ggcaacgatg ggtaggggtc ctgagaggga gatcccccac actggtactg agacacggac +cagactccta cgggaggcag cagtgaggaa tattggacaa tgggcgcaag cctgatccag +ccatgccgcg tgcaggaaga aggtcctatg gattgtaaac tgcttttata caggaagaaa +cacctctacg tgtagagact tgacggtact gtatgaataa ggaccggcta actccgtg +>OTU_14421 +aacgaacgct ggcggcatgc ttaacacatg caagttgaac gcaggataga ccttcgggtc +tattgctgag tagcaaacgg gtgagtaacg cgtgggaatc tacctttttg tgggggataa +ctgagggaaa cttcagctaa taccgcataa gctctacgga ggaaaggccg caaggtcgca +agaagaggag cccgcgtcag attaggtagt tggtggggta aaggcctacc aagccaatga +tctgtagctg gtctgagagg atgatcagcc acactgggac tgagacacgg cccagactcc +tacgggaggc agcagtgggg aatattggac aatgggggaa accctgatcc agcaatgccg +cgtgaatgat gaaggcctta gggttgtaaa gttctttcac ctgtggagat aatgacggta +gcaggannng aanccccggc taactccgtg +>OTU_2972 +gatgaacgct agcggcaggc ctaatacatg caagtcaagg gggcagcaat gtcaccggcg +gacgggtgcg taacgcgtac acaacgtacc tctgacaggg ggatagcatt gggaaactgg +tggtaatacc ccatagtatt actggacggc attgtctggt aattaaagtt tcggcggtca +gagatcggtg tgcgtccgat tagctagttg gcggggtaac ggcccaccaa ggctacgatc +ggtagggggt gtgagagcat gaccccccac atgggtactg agacacggac ccaactccta +cgggaggcag cagtaaggaa tattggacaa tggtcggaag actgatccag ccatgccgcg +tgaaggacga aggcgctcag cgttgtaaac ttcttttgga tggggataat aattccgatt +tatcgggact tgaaggtacc atcagaataa gcaccggcta actccgtg +>OTU_8291 +aacgaacgct ggcggcgcgc ctaatacatg caagtcgagc gagaaggtgt agcaatacac +ttgtaaagcg gcgaacgggt gaggaataca tgggtaatct accatcgagt ggggaataac +cagccgaaag gttggctaat accgcgtacg cctccggatc ttcgggttcg gagggaaagc +cacactgtga gtgcggcgct ctttgatgag ctcatgtcct atcagcttgt tggtagggta +acggcctacc aaggctttga cgggtagctg gtctgagagg acgatcagcc acactggcac +tgcgacacgg gccagactcc tacgggaggc agcagtaagg aatattgcgc aatgggcgaa +agcctgacgc agcgacgccg cgtgggggat gaaggtcttc ggattgtaaa cccctttcgg +gagggaagat ggagcgagca atcgttcnng cngnncctcc annngnnncc acnnccaact +tcntg +>OTU_289 +gatgaacgct agcggcaggc ttaatacatg caagtcaagg gggtagcaat acaaccggcg +cacgggtgag taacgcgtac acaacatacc atatactgga gtatagcttt gggaaactga +aggtaatcct ccataacatt gcgagagggc atctgattgc aattaaagtt tcggcggtat +atgattggtg tgcgtttgat tagctagttg gtagggtaac ggcctaccaa ggcgacgatc +aatagctggc gtgagagcgc gaccagccac actggaactg agacacggtc cagactccta +cgggaggcag cagtagggaa tattggacaa tggaggaaac tctgatccag ccatgccgcg +tgatagatga aggccctctg ggttgtaaat atcttttatc tgggaagaaa cactcctatt +cttaggaact tgacggtacc agaggaataa gcaccggcta actccgtg +>OTU_1306 +gattaacgct ggcggtatgc ctaatacatg caagtcgaac gaactttttg aattttttta +gattttagat attggaatct agtgcaatag tactaacttc cagcaactaa actctaagcg +attcaatttg ttagtggcgg acgggtgagt aacacgttgg aacctacccc gaagtgagga +ataactgccc gaaagggtag ctaatacctc atagtctccg atttattcgg agtaaagatt +tatcgcttcg ggaggggcct gcgtccgatt agctagttgg tgaggtaaat gctcaccaag +gcgacgatcg gtagctggtt tgagaggatg accagtcaca ctgggactga gatacggccc +agactcctac gggaggcagc agtaaggaat cttccacaat gggggcaacc ctgatggagc +aataccgcgt gcaggatgaa gcgtttcggc gtgtaaactg cttttatctg tgatgattat +gacagtagca gaagaataag gatcggctaa ctacgtg +>OTU_4839 +cctgaacgct ggcggcgtgg ctaagacatg caagtcgtac gggtgtagca atacaccagt +ggcgcacggg tgagtaacat atagctaatc taccctggaa tctgggatag ctgtccgaaa +ggacaggtaa taccagatga aataactgtg tcgcatggca cggttctcaa agggcaaccg +ttctgggatg aggctatatt gtatcagcta gttggtaggg taatggccta ccaaggcaat +gacgcatagc cggactgaga ggttggccgg ccacatcgga actgagacac tgtccggact +cctacggggg gctgcagtaa cgaatcttcc acaatgcacg aaagtgtgat ggagcgacgc +cgcgtgtggg acgaagtcct tcgggatgta aaccactgtc aagggaaaga aagatctgat +ctaccctaga ggaagtggcg actaactctg tg +>OTU_11689 +attgaacgct ggcggcatgc ttaacacatg caagtcgaac ggatcgtgtt tcttcggatt +catggttagt ggcgaacggg tgagtaacac gtgagtaacc tgcccttcac tttgggataa +ctgtgggaaa cttcagctaa taccggatat tcattttctc ctgcatgggg gtttgtggaa +agattttttg gtgggggatg ggctcgcggc ctatcagctt gttggtgggg tgatggccta +ccaaggcttt gacgggtagc cggcctgaga gggcgaccgg ccacactggg actgagatac +ggcccagact cctacgggag gcagcagtgg ggaatattgc acaatgggcg aaagcctgat +gcagcaacgc cgcgtgcggg atgacggcct tcgggttgta aaccgctttc actaggggcg +aatttgacgg tacctgggga agaagcaccg gctaactacg tg +>OTU_12665 +gatgaacgct agcgacaggc ttaacacatg caagtcgagg ggcatcatgg taagtagcaa +tacttattga tggcgaccgg cgcacgggtg agtaacgcgt atgcaactta cctatcagag +ggggatagcc cggcgaaagt cggattaata ctccataaaa caggggttcc gcatgggact +atttgttaaa gattcatcgc tgatagatag gcatgcgttc cattaggcag ttggcggggt +aacggcccac caaaccgacg atggataggg gttctgagag gaaggtcccc cacattggta +ctgagacacg gaccaaactc ctacgggagg cagcagtgag gaatattggt caatggccga +gaggctgaac cagccaagtc gcgtgaagga tgaaggatct atggtttgta aacttctttt +ataggggaat aaagtgtggg acgtgttcca ttttgtatgt accctatgaa taagcatcgg +ctaactccgt g +>OTU_2085 +gatgaacgct agcggaaggc ctaatacatg caagtcgaac ggttgatagc aatattgata +gtggcgcacg ggtgagtaac gcgtacataa cctaccttag attgggggat agccctggga +aactgggagt aataccgcat aagcttatat ttcggcatcg ggatatgagg aaagctgagg +cgatgtaaga tggatgtgcg tctgattagg tagttggtag ggtaacggcc taccaagccg +acgatcagta gggggtgtga gagcatggcc ccccacacgg gtactgagac acggacccga +ctcctacggg aggcagcagt aaggaatatt ggtcaatggt gggaacactg aaccagccat +tccgcgtgga ggaagaaggc cctctgggtt gtaaacttct ttagtatggg aagaaagctt +atgattcatc ataatttgac ggtaccataa gaataagcac cggctaactc cgtg +>OTU_448 +gatgaacgct agcggcaggc ctaatacatg caagtcaagg gggtcgcaag atcaccggcg +gacgggtgcg taacgcgtac acaacgtacc ttcgacaggg ggatagcatt gggaaactgg +tggtaatacc ccataacatt gcgctgaggc attttagtgc aattaaagtt acggcggtcg +gagatcggtg tgcgtctgat tagctagttg gcggggtaac ggcccaccaa ggcgacgatc +agtagggggt gtgagagcat ggccccccac atgggtactg agacacggac ccaactccta +cgggaggcag cagtaaggaa tattggacaa tggacgcaag tctgatccag ccatgccgcg +tgaaggaaga aggcgctcag cgttgtaaac ttcttttgga cggggacaaa ccgcttcatt +tatggggcgc tgagggtacc gtcagaataa gcaccggcta actccgtg +>OTU_6935 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac gggcctgcct ggctttggtt +gggtgggtga gtggcgaacg ggtgagtaac acgtgagtaa cctgccctct tctcttggat +aactgcttga aagggcggct aatacgggat gttctggctg cctcgcatgg ggtggtttgg +aaagattcgg cctggttttg gttgttttgg tgggggatgg gctcgcggct tatcagcttg +ttggtggggt gatggcctac caaggcggtg acgggtagcc ggcctgagag ggtggacggt +cacactggga ctgagacacg gcccagactc ctgcgggagg cagcagtggg ggattttgca +caatgggcgc aagcctgatg cagcgacgcc gcgtgaggga tggaggcctt cgggttgtga +acctctgtcg ccggtgatgt aggctctgct ttgtgggtgg ggttgacggt agccggggta +tgaagtgccg gctaactacg tg +>OTU_190 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgagc ggtaaggctc cttcgggagt +acacgagcgg cgaacgggtg agtaacacgt gagcaatctg cccttctcat cggaataacc +attggaaacg atggctaatg ccgaatatga cctcggaaca catgttctga ggtggaaagc +tccggcggag aaggatgagc tcgcggccta tcagcttgtt ggtgaggtaa tagctcacca +aggcgatgac gggtagccgg cctgagaggg tgaccggcca cactgggact gagacacggc +ccagactcct acgggaggca gcagtgggga atattggaca atgggcgaaa gcctgatcca +gcaacgccgc gtgagggatg acggccttcg ggttgtaaac ctctttcagc agggacgaag +cgaaagtgac ggtacctgca gaagaaggac cggccaacta cgtg +>OTU_4458 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgagc gatgaaaata caaatgattc +cttcggggag aatgcgtgtt ggattagcgg cggacgggtg agtaacacgt gagcaacctg +cctatcacat cgggatagcc tcgggaaact gggattaata ccgaatgaaa catagaatta +gcattaattc aatgtcaaag atttatcggt gatagatggg ctcgcgtctg attagctagt +tggtgaggta atggctcacc aaggcgacga tcagtagccg gcctgagagg gtgaacggcc +acattgggac tgagacacgg cccaaactcc tacgggaggc agcagtgggg aatattgcac +aatggaggga actctgatgc agcgacgccg cgtgagcgat gaaggctttc gagtcgtaaa +gctctgtcga atgggaagat aatgacggta ccatttgaga aagccccggc taactacgtg +>OTU_927 +gatgaacgct ggcggcatgc ctaaaacatg caagtcgtgc gagaagctac cttcgggtag +tagaaagcgg cgaacgggtg agtaacgcgt agaaacatac cccagagtga gggataattt +cgagaaatcg gaactaatac cgcataacgt ctaaggacaa aagatttatc gctttgggaa +tggtctgcgt ctgattagtt tgttggtgag gtaatggctc accaagacga tgatcagtag +ctggtttgag aggatgatca gccacactgg gactgagaca cggcccagac tcctacggga +ggcagcagtt aggaatcttc cacaatgggc gaaagcctga tggagcaatg ccgcgtgcag +gatgaagctt ttcggagtgt aaactgcttt tatagttgaa gattatgacg gtagactatg +aataaggatc ggctaactac gtg +>OTU_5113 +gacgaacgct ggcggcgtgc ctaacacatg caagtcaaag gaaagtgact tcggtcgcaa +gtacttggcg caagggtgag taaggtatag gtaatctgcc ctttggactg ggataacctc +gagaaatcga ggacaatacc agatgatgca gcgggaccgc atggtcatgt tgttaaagat +ttatcgccaa aggatgagcc tatattccat caggtagttg gtagggtaac ggcctaccaa +gcctacgacg gatagctggt ctgagaggat gatcagccac attggaactg agacacggtc +cagactccta cgggaggcag cagtgaggaa tattgcgcaa tgggcgaaag cctgacgcag +caacgccgcg tggatgatga agttcttcgg aatgtaaaat ccttttgcag aggaagaaaa +tgctggttta ccggcactga cggtactctg cgaataagcc acggctaact ctgtg +>OTU_1875 +gatgaacgct agcggcaggc ctaacacatg caagtcgagg ggcagcacga gtaatagcaa +tattacttgg tggcgaccgg cgcacgggtg cgtaacacgt atgtaatctg ccttgaactg +gggcataacg tcgagaaatc ggcgctaatt ccccataaaa ccacagagtg gcatcactta +atggttaaag ctccggcggt tcaagatgaa catgcgtcca attagctagt tggtgaggta +acggctcacc aaggctccga ttggtagggg ttctgagagg atgatccccc acactggtac +tgagacacgg accagactcc tacgggaggc agcagtgagg aatattgcgc aatggacgaa +agtctgacgc agccatgccg cgtgaaggat tgaaggccct atgggttgta aacttctttt +gtatgggaat aaacgctact acgtgtagta gcctgaaggt accataagaa taagcaccgg +ctaactccgt g +>OTU_9228 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgagc gaacaaagct ccttcgggag +tggagttagc ggcggacggg tgagtaacac gtgggtaacc tgccttatag agggggatag +ccttccgaaa ggaagattaa taccgcataa gaagtagaag tcgcatggct ttagctttaa +aggagcaatc cgctataaga tggacccgcg gcgcattagc tagttggtga ggtaacggct +caccaaggcg acgatgcgta gccgacctga gagggtgatc ggccacattg gaactgagac +acggtccaga ctcctacggg aggcagcagt ggggaatatt gcacaatggg cgaaagcctg +atgcagcaac gccgcgtggg tgatgaaggt tttcggatcg taaagccctg tcttttggga +cgataatgac ggtaccaaag gaggaagcca cggctaacta cgtg +>OTU_1845 +aacgaacgct ggcggcaggc ttaacacatg caagtcgaac gaacgtagca atacgttagt +ggcgcacggg tgagtaacgc gtggatatct gccttttggt tcggaataac cttgggaaac +tagggctaat 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+>OTU_6507 +agtgaacgct ggcggcgtgc ttaacacatg caagtcgagc ggggttactg gcgtagcaat +acgtcgtgtg cccagcggca gacgggtgag taacacgtag acaatctacc ttctagaggg +ggatagcccg ccgaaaggcg gggtaatacc gcgtaagatc aagacccggc atcgggattt +gatggaacgt ccgcaaggac ggctagaaga ggagtctgcg gcctatcagc tagttggcgg +ggtaatggcc caccaaggca acgacgggta tccgacctga aagggtgacc ggacacactg +acactgagac acgggtcaga ctcctacggg aggcagcagt gaggaatttt ggacaatggg +ggaaaccctg atccagcgac gccgcgtgag ggacgaaggt cttcggattg taaacctctt +ttgcctggga ataagaacct tgtagaaata tgaggagtga atgtaccagg cgaataagcc +acggctaact tcgtg +>OTU_7542 +agcgaacgtt agcggcgggc ctaacacatg caagtcgagc gagaaaggga cttcggtcct +gagtacagcg gcggacgggt gaggaacacg taggtaatct gcccttcagt ggaggacaac +ggtccgaaag gaccgctaat actgcatacg ttccttggga ctccggtcct ggggaggaaa +gcctcgcaag gggcgctgat ggaggagcct gcgtcgcatc agctagttgg tggggtaacg +gcctaccaag gctaagacgc gtagctggtc tgagaggatg atcagccaca ctgggactga +gacacggccc agactcctac gggaggcagc agtggggaat attggacaat gggggaaacc +ctgatccagc cacgccgcgt gagtgatgaa ggccttcggg tcgtaaagct ctgtggggag +ggacgaaaga ctccgtgaag aacggagagt gacggtacct ccttagcaag caccggctaa +cttcgtg +>OTU_13718 +gacgaacgct ggcggcgtgc ctaatacatg caagtcgagc gaaccgatta aaagcttgct +tttttgaggt tagcggcgga cgggtgagta acacgtgggc aacctgccct atagactggg +ataactcgcg gaaacgcgtg ctaataccgg ataatacaat ggagcgcctg cttcattgtt +gaaagatggt ttttgctatc actataggat gggcccgcgg cgcattagct agttggtggg +gtaacggcct accaaggcga cgatgcgtag ccgacctgag agggtgatcg gccacactgg +gactgagaca cggcccagac tcctacggga ggcagcagta gggaatcttc cacaatggac +ggaagtctga tggagcaacg ccgcgtgagc gaagaaggtc ttcggatcgt aaagctctgt +tgtaagggaa gaataagtac agtagtaact ggctgtacct tgacggtacc ttacgagaaa +gccacggcta actacgtg +>OTU_4593 +agcgaacgct ggcggcgtgc ctaacacatg caagtcgaac gtgaacgggg caaccctagt +aaagtggcgt acgggtgagt aacacgtagg caatctacct tagagttcgg aataacctgc +cgaaaggcgg gctaatactg gatagagcga cggaactcat aaagagtttc tcgggaaagg +gagcccgtaa gggccctcgc tttaggatga gcctgcgtcc catcagctag ttggtagggt +aacggcctac caaggcaatg acgggtagct ggtctgagag gatgatcagc cacactggaa +ctgaaacacg gtccagactc ctacgggagg cagcagtggg gaatcttgcg caatggacga +aagtctgacg cagcaacgcc gcgtgagtga agaaggcctt cgggttgtaa agctctgtcg +cccgggacga aaatgcagtc ggtgaatagc cgattgaact gacggtaccg ggagaggaag +caccggctaa cttcgtg +>OTU_2343 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgaac ggaacttctt taaaggattt +cttcggaatg aatttgatta agtttagtgg cggacgggtg agtaacgcgt gagtaacctg +cctctaagag gggaataaca ttctgaaaag aatgctaata ccgcataata tatatttatc +gcatggtaga tatatcaaag atttatcgct tagagatgga ctcgcgtccg attagttagt +tggtgaggta acggctcacc aagaccgcga tcggtagccg gactgagagg ttgaacggcc +acattgggac tgagacacgg cccagactcc tacgggaggc agcagtgggg gatattgcgc +aatgggggaa accctgacgc agcaacgccg cgtgaaggat gaaggtcttc ggattgtaaa +cttcttttat taaggacgaa gaaagtgacg gtacttaatg aataagctcc ggctaactac +gtg +>OTU_8708 +gatgaacgct ggcggcatgc ctaaaacatg caagttgtgc gagaaacccc tcgccttttt +tatgatatct taagctaagc ttaagtttat aattgtcaaa aaggtgaggg gcggaaagca +gcggacgggt gagtaacgcg tagaaacata ccctagagtg agggataagc attggaaaca +gtgtctaata ccgcataatg tctatggaca aaagatttat cgctttagga atggtctgcg +tctgattagt tagttggtaa ggtaatggct taccaagacg atgatcagta gctggttcga +gaggacgatc agccacactg ggactgagac acggcccaga ctcctacggg aggcagcagt +taggaatctt ccacaatggg cgcaagcctg atggagcaat gccgcgtgca ggatgaagct +tttcggagtg taaactgctt ttataaccga agattatgac ggtaggttat gaataaggac +cggctaacta cgtg +>OTU_2677 +gatgaacgct ggcggcgtgc ctaagacatg caagtcgagt gggtttagac ccacggcgaa +cgggtgagta atacctagga acttcccttt agttgagcat aacccatcga aaggtgggat +aattctcgat gtgaccgcaa ggttaaagtc gcaagacgct aaagaatagg cctgggcacc +atcagcttgt tggtaaggta aaagcttacc aaggctatga cggttagggg ccccgagagg +ggaaacctcc acactggaac tgcgacacgg tccagactcc tacgggaggc agcagtttgg +aattttggac aatgggcgaa agcctgatcc agcgacgccg cgtggacgat gaaggccttc +gggttgtaaa gtccttttgt tagggaagaa tttttgactg tacctagcga ataagaggtt +gctaactctg tg +>OTU_9665 +gacgaacgct ggcggcgtgc ctaaaacatg caagtcgaac ggggtccatc cttcgggaga +agaccgagtg gcgaacgggt gagtaacacg tgagcaacct gtctcgaagt ctgggataag +ccggggaaac ctggtctaat accggatgtc ctccaacctt cttatgttgg tacgaggaaa +gatttatcgc ttcgagaggg gctcgcggcc tatcagcttg ttggtggggt aatggcctac +caaggcgtcg acgggtagct ggtctgagag gatgatcagc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagttgg gaatattgcg caatgggcga aagcctgacg +cagcaacgcc gcgtgaggga tgaaggcttt cgggttgtaa acctctttca gcaggaacga +aattgacggt acctgcagaa gaagcaccgg ccaactacgt g +>OTU_81 +gatgaacgct agcgggaggc ctaatacatg caagtcgagc ggtaactttc ttcgggaagc +tagagcggcg cacgggtgag taacgcgtac atgacctgcc tttaagaccg ggatagccct +gggaaactgg gattaatacc ggatgtgata atagatataa agatttatta ttaaagttac +ggcgcttaga gatggatgtg cgtctgatta gctagttggt agggtaacgg cctaccaagg +ctacgatcag tagggggcgt gagagcgtgg ccccccacac gggtactgag acacggaccc +gactcctacg ggaggcagca gtaaggaata ttggtcaatg gacgaaagtc tgaaccagcc +atcccgcgtg caggatgaag gtcctatgga ttgtaaactg cttttagcag agaagaaaag +catcctttta agggtgtctg acggtatctg cggaataagc accggctaac tccgtg +>OTU_6422 +gatgaacgct agcggcaggc ttaatacatg caagtcgtgg ggcagcaggt ttgtagcaat +acagatgctg gcgaccggca aacgggtgtg gaacacgtac acaaccttcc tttaagtggg +gaatagccca gggaaacttg gattaatacc ccgtaacatt gtgaagtggc atcactttac +aattatagct ccggcgctta aagacgggtg tgcgtctgat taggtagttg gcggagtaac +agcccaccaa gcctacgatc agtaactggt gtgagagcac gaccagtcac acgggcactg +agacacgggc ccgactccta cgggaggcag cagtaaggaa tattggtcaa tggacgcaag +tctgaaccag ccatgccgcg tggaggatga aggtcctctg gattgtaaac ttcttttatt +tgggaagaaa ctcccgattt ccatcgggat tgacggtacc agatgaataa gcaccggcta +actccgtg +>OTU_1612 +aatgaacgct ggcggcgtgc ttaagacatg caagtcgtac gcgaaagccc gcaagggtaa +gtagagtggc gcacgggtga gtaatacttg ggtaatgtac cctctcgctg gggataacca +ggcgaaagct tggctaatac cgaatgatcc gtccggggct ctggccctgg ccggtaaagc +cgtaaggcgc gagtggaata gcccaagtcc cattagctag ttggtagggt aacggcctac +caaggcttcg atgggtagct ggtctgagag gacgatcagc cacactggta ctgacacacg +gaccagactc ctacgggagg cagcagttag gaattttgcg caatgggaga aatcctgacg +cagcaacgcc gcgtgaggga tgaaggcctt cgggttgtaa acctctttta gcagggaaga 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gggcgaaagc ctgacgcagc +aacgccgcgt gcgggacgac ggccttcggg ttgtaaaccg ctttcagcag ggacgaagtg +aaaatgacgg tacctgcann ngaancaccg gccaactacg tg +>OTU_5187 +gatgaacgct ggcggcgtgc ctaacacatg caagtcgaac gttagagcgt agcaatatgc +tcaaaagtgg cgaacgggtg agtaacacgt gggtaacctg ccgcgcagag ggggataacg +actggaaacg gtcgctaata ccgcatggta ccaagaggaa tggtctcctt ttggttaaaa +ctttggtgct gcgcgagggg cctgcgcccg attagctagt tggtgaggta aaggctcacc +aaggcgatga tcggtagcta gtctgagagg atgattagcc acacgggaac tgagacacgg +tcccgactcc tacggggggc agcagtgagg aatattgcac aatggacgaa agtctgatgc +agcaacgccg cgtggaggat gaaggccctt gggttgtaaa ctcctttttt cagggaagag +aatggacggt acctgaagaa taagtcacgg ctaactacgt g +>OTU_7882 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgagc ggagattgca gtaatgtaat +cttagcggcg gacgggtgag taacgcgtgg gcaacctacc tataactggg ggataacaca +gggaaacttg tgctaatacc gcataacatc atgaagtgac atcactttat gatcaaagga +gcaatccggt gatagatggg cccgcgtccg attagctagt tggtggggta atggctcacc +aaggcgacga tcggtagccg aactgagagg ttgatcggcc acattgggac 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aaggcaacga tggatagggg aactgagagg tttatccccc acactggtac +tgagacacgg accagactcc tacgggaggc agcagtgagg aatattggtc aatggaggca +actctgaacc agccacgtcg cgtgaaggaa gacggcccta cgggttgtaa acttcttttg +taagggaata aagtgcagta cgtgtactgt tttgcatgta ccttacgaat aaggatcggc +taactccgtg +>OTU_6318 +aacgaacgct ggcggcatgc ttaacacatg caagtcgaac ggtaacagtc ccgcaaggga +gctgacgagt ggcgcacggg tgagtaacac gtgaataacc tgcccaaagc actgggataa +catatcgaaa gatgtgctaa taccggatga aatatatgac tgcagggttg tatattaaag +aagcaattcg gcaatggagg ggttcgcgtc ccattaggta gttggtaagg taacggctta +ccaagccaaa gatgggtagc tggtttgaga gaatgatcag ccacactgga actgagaaac +ggtccagact cctacgggag gcagcagtga gggatattgc acaatggagg gaactctgat +gcagcaatgc cgcgtgagtg aaggaggccc tatgggttgt aaagctctgt ggatggggaa +aataatgatg gtacccattt agaaagcacc ggctaactac gtg +>OTU_2148 +attgaacgct ggcggcatgc cttacacatg caagtcgaac ggattcaagg ggcttgctcc +ttgagttagt ggcgaacggg tgagtaaagc atcggaacgt acccagtcgt gggggataac +gtagcgaaag ttacgctaat accgcatacg tcctgaggga gaaagcgggg gactcgcaag +agcctcgcgc gattggagcg gccgatgtcg gattagctag ttggtgaggt aaaagctcac +caaggcgacg atccgtagct ggtctgagag gacgaccagc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaattttgga caatgggcga aagcctgatc +cagccatgcc gcgtgagtga agaaggcctt cgggttgtaa agctctttca gacggaaaga +aatggctccg gataatacct ggagtcgatg acggtaccgt aagaagaagc accggctaac +tacgtg +>OTU_2244 +gatgaacgct ggcggcgtgc ctaacccatg taagtcgggc gatctttgta gcaatacgga +gagagcggcg gaagggtgag taacacgtag aagacctacc tcactgcagg gaacaacttc +gcgaaagcgg agctaatacc caaaaggttc ggacattcaa ttgttcgagc agagttcgca +agagcgtagt gagagggttc tgcggcccat cagctagttg gtagggtagt ggcctaccaa +ggcaacgacg ggtagggggt ctgagaggac gatcccccac actggaactg aaacacggtc +cagacgccta cgggtggcag cagggaggaa tattgggcaa tgggcgaaag cctgacccag +caacgccgcg tgaaggatga aagccttcgg gttgtaaact tcttttgagg gagacgagaa +aggacggtat ccctcgaata agcaacggct aactacgtg +>OTU_7867 +gatgaacgct agcgggaggc ttaacacatg caagtcgagg ggtatttgta gcaatacaga +gagaccggcg cacgggtgag taacgcgtat gcaacctgcc 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cggggtgtaa accacttttc tcggggaaga +agcactgacg gtacctgagg aataaggacc ggctaactac gtg +>OTU_8245 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgaac ggagatatga tttcggttat +atcttagtgg cgaacgggtg agtaacgcgt gagcaacctg accttcagag ggggataaca +tttggaaaca gatgctaata ccgcataaga ccacgccgtg gcatcacgga gaggtcaaag +gagcaatccg ctgagggagg ggctcgcgtc ccattagata gatggcgggg taacggccca +ccatgtcaac gatgggtagc cgagctgaga ggctgatcgg ccacactgga actgagacac +ggtccagact cctacgggag gcagcagtgg ggaatattgg gcaatgggcg caagcctgac +ccagcaacgc cgcgtgaggg aagaaggctt tcgggttgta aacctctgtc cttggtgacg +aaaaaaatga cggtagccaa ggaggaagcc ccggctaact acgtg +>OTU_10847 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgagc ggagaaacaa aagagcagct +tgctgcgatt tgtttcttag cggcggacgg gtgagtaacg cgtgggtaat ctgcctcaaa +cagggggata acacagggaa acttgtgcta ataccgcata agaccccacc atggcatcat +ggagaggtca aaggaagaaa ttccggtttg agatgagccc gcgtctgatt agctagttgg +tgaggtaacg gctcaccaag gcgacgatca gtagccgaac tgagaggttg atcggccaca +ttgggactga gacacggccc agactcctac gggaggcagc agtggggaat attgcacaat +gggggaaacc ctgatgcagc gacgccgcgt gaaggaagaa ggccctcggg ttgtaaactt +ctttgaccag ggacgaagaa agtgacggta cctggagaac aagccacggc taactacgtg +>OTU_1151 +aatgaacgct ggcggcgtgc ctaacacatg caagtcggat gtgccgcaag gtgcatggca +gacgggtgag taacgcgtgg ggaacctacc tcttcgtggg gaataacgtt ccgaaaggaa +tggtaatacc gcatgagacc gacggctggg atgctgtcgg tgaaagctgg ggaccggaaa +cggcctggcg cgaggagagg gtcctgcgtc tgattagcta gttggtgggg taacggccta +ccaaggcatc gatcagtagc cggcctgaga gggtgatcgg ccacactgga actgagacac +ggtccagact cctacgggag gcagcagtgg ggaattttgc gcaatggacg aaagtctgac +gcagcaacgc cgcgtgggtg atgaaggtct tcggattgta aaaccctgtc gtcggggacg +aaggtgtgga tgttaatagc gttcatgctt gacggtaccc ggagaggaag ccccggctaa +ctctgtg +>OTU_1998 +gacgaacgct ggcggcgtgc ttaacacatg caagtcgaac ggtgacctcg agagcttgct +cttgggtgat cagtggcgaa cgggtgagta acacgtgagt aacctgcccc agactctgga +ataaccccgg gaaaccggag ctaataccgg atacgagacg gagccgcatg gctaccgttt +ggaaagtttt tcggtctggg atggactcgc ggcctatcag ttagttggtg aggtaacggc +tcaccaagac gacgacgggt agccggcctg agagggcgac cggccacact gggactgaga +cacggcccag actcctacgg gaggcagcag tggggaatat tgcacaatgg gcgaaagcct +gatgcagcga cgccgcgtga gggatgaagg ccttcgggtt gtaaacctct ttcagcaggg +aagaagcgaa agtgacggta cctgcagaag aagcaccggc taactacgtg +>OTU_10321 +aacgaacgct ggcggcatgc ttaacacatg caagtcgaac ggatgtcttg gctttggctg +gggcatcagt ggcgcacggg tgagtaacgc gtgggaacct gtccttaggt ggggaacaac +cgctggaaac ggcggctaat accgcatgat cccttcggtg agagccgttg ggcaaaggct +ttcgagccgc ctgaggaggg gcccgcgtcc gattagcttg ttggtggggt aacggcctac +caaggcatcg atcggtagct ggtctgagag gacgatcagc cacactggga ctgagacacg +gcccagactc ctacgggagg cagcagtggg gaatattgga caatgggggc aaccctgatc +cagcaatgcc gcgtgagtga tgaaggcctt agggttgtaa agctctttcg cccgagacga +tgatgacggt atcgggagaa gaagccccgg ctaattccgt g +>OTU_4721 +attgaacgct ggcggcatgc cttacacatg caagtcgaac ggtaacaggt cttcggatgc +tgacgagtgg cgaacgggtg agtaatacat cggaacgtgc ccagacgtgg gggataacga +ggcgaaagct ttgctaatac cgcatacgat ctaaggatga aagcagggga 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cgtgcgggat gacggccttc gggttgtaaa ccgctttcag ccatgacgaa +gcttttgtga cggtagtggc agaagaagca ccggctaact acgtg +>OTU_6533 +gatgaacgct gacagaatgc ttaacacatg caagtcaacc cgagagtact tcggtactga +tagggtggcg cacgggtgag taacacgtga ataacctgcc ctcaagactg ggacaactac +tcgaaagggt agctaatacc ggataagctc acgacaccac atggtgtagg gagaaaagct +atatgcactt gaggaggggt tcgcgtccca ttagctagtt ggtgaggtaa aggctcacca +aggcgacgat gggtagccgg cctgagaggg tggacggcca caagggaact gagacacggt +ccttactcct acgggaggca gcagtgggga atattggaca atgggccacg agcctgatcc +agcaattctg tgtgggtgat gacggtctta ggattgtaaa gccctttcag tggggaagaa +gaaagtgaca gtacccacag aagaagccac ggctaactac gtg +>OTU_8887 +gattaacgct ggcggcatgc ctaagacatg caagtcgtac gaagcgaccc aatgaagttt +gagtgcttgc acaaagatga atttggatta tcgcttagtg gcggacgggt gagtaacacg +tgggtaacct gcctttaagt ttgggataac atagggaaac ttgtgctaat accggatacg +agttagaaat gatttttcta atttgaaagg tgcctttaaa gcatcgctta aagatgggcc +tgcggcgtat tagttagttg gtggggtaac ggcctaccaa gacaacgatg cgtagccgaa +ctgagaggtt gatcggccac attgggactg agacacggcc caaactccta cgggagacag +cagttaggaa tattcgtcaa tgggggaaac cctgaacgag caatgccgcg tgagtgatga +cggtcctttg gattgtaaaa ctctgttgta tgggaagaac actaagtata ggaaatgata +cttagctgac ggtaccatgc cagaaagccc cggctaacta cgtg +>OTU_12690 +gatgaacgct ggcggcgtgc ttaacacatg caagtcgaac gtgagagata gcaatatctt +gaaagtggca aacgggtgag taacacgtag gtaacctgcc tcggagtggg ggataaccac +gggaaactgt ggctaatacc gcatggtctt gtagacacgg gagtgttaac aagtaaagct +ttagtgcttc gagaggggtc tgcgtccgat tagctagttg gtgaggtaaa ggctcaccaa +ggcgatgatc ggtagctggt ctgagaggac gatcagccac acgggaactg agacacggtc +ccgactccta cggggggcag cagtgaggaa tattggtcaa tggacgcaag tctgaaccag +caacgccgcg tggaggaaga aggccttcgg gttgtaaact ccttttctgc gggaaaagaa +aaaggatggt accgcaggaa taagtcacgg ctaactacgt g +>OTU_3097 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgagc ggagaatgcg gatatgttta +catagaagcg ttcttagcgg cggacgggtg agtaacacgt gggtaacctg cctcaaagtg +ggggatagcc ttccgaaagg aagattaata ccgcataagc ctacagtatc gcatggtaca +gcaggaaaag 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ctgcatacgt cccttcgggg agaaaggtgg ctttatgctg +ccgctaaagg atgggcttgc gtactattag ctagttggta gggtaatggc ctaccaaggc +gatgatggtt aaccggcctg agagggtgta cggtcacact ggaactgaga cacggtccag +actcctacgg gaggcagcag tggggaatat tgcgcaatgg gcgaaagcct gacgcagcga +cgccgcgtgg aggatgaagg tcttcggatt gtaaacttct gttaagtggg aagaaatctc +agtctttaat agagattgag gatgacggta ccattagaga aagcactggc taacttcgtg +>OTU_12385 +gacgaacgct ggcggcgtgc ctaacacatg caagtcgaac ggagacttaa cgctgaattg +aagaaagctt gctttaagat attcttgtta agtcttagtg gcggacgggt gagtaacgcg +tgagtaacct gcctttcaga ggggaataac ggctggaaac ggtcgctaat accgcataaa +gtatcgaagc cgcatgactt tgataccaaa gatttatcgc tgaaagatgg actcgcgtcc +gattagatag ttggtggggt aacggcctac caagtcgacg atcggtagcc ggactgagag +gttgaccggc cacattggga ctgagatacg gcccagactc ctacgggagg cagcagtggg +gaatattgca caatgggcgc aagcctgatg cagcaacgcc gcgtgaggga agacggtctt +cggattgtaa acctctgtct ttggtgaaga agaaagtgac ggtagccaag gaggaagcca +cggctaacta cgtg +>OTU_1496 +gacgaacgct ggcggcgtgc ctaaaacatg caagtcgaac 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agtccggaat +agccatccta acggatgggt aataccggat gtcgtacctg gagggcctcc ttcgggtacg +aaagttcagg cgctccggga ggggcccatg tagtattagc tagttggtga ggtaacggct +caccaaggcc aagatgctta gcaggtgtga gagcacgacc tgcgccactg gcactgggac +actggccaga ctcctacggg aggctgcagt cgaggatctt cggcaatggg cgcaagcctg +accgagcgac gccgcgtgtg cgatgaaggc cttcgggttg taaagcactg tcggggggga +gaaaagccgc aaggcttgat cgacccccgg aggaagcacg ggctaagttc gtg +>OTU_9512 +gatgaacgct agcggcaggc ttaacacatg caagttgcgg ggcagcagta cttcggtagc +tggcgaccgg cgcacgggtg cgtaacgcgt atgcaaccta ccctttacag ggggatagcc +cgaggaaact cggattaata ccccatagtt tggatttttc gcatggaaga tttaataaag +ttctggcggt aaaggatggg catgcgtgac attagctagt tggagaggta acggctcacc +aaggctacga tgtctagggg tcctgagagg gaaaaccccc acactggtac tgagacacgg +accagactcc tacgggaggc agcagtgagg aatattggtc aatgggcgca agcctgaacc +agccatgccg cgtgcaggaa gacggcccta tgggttgtaa actgctttta tataggaaga +attatattac gtgtaataag ttgacagtac tatatgaata agcaccggct aactccgtg diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs.nwk --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs.nwk Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,1 @@ 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diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs.otu.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs.otu.csv Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,201 @@ +OTU 16SAMP-747 16S-AMP-1168 16SAMP-4603 16S-AMP-1149 16SAMP-537 16S-AMP-1114 16SAMP-3893 16SAMP-703 16SAMP-638 16SAMP-2611 16S-AMP-1100 16SAMP-608 16SAMP-636 16SAMP-13288 16SAMP-719 16S-AMP-1098 16SAMP-536 16S-AMP-1169 16SAMP-635 16SAMP-637 16SAMP-717 16S-AMP-1148 16SAMP-735 16SAMP-729 16SAMP-738 16SAMP-2613 16SAMP-10925 16SAMP-3913 16SAMP-716 16SAMP-726 16SAMP-728 16SAMP-625 16SAMP-736 16SAMP-13281 16SAMP-626 16SAMP-704 16SAMP-2612 16SAMP-746 16SAMP-522 16SAMP-516 16S-AMP-1170 16S-AMP-1099 16SAMP-10932 16SAMP-740 16SAMP-739 16SAMP-4597 16SAMP-535 16SAMP-3941 16SAMP-3953 16SAMP-720 16SAMP-705 16SAMP-10907 16SAMP-538 16SAMP-10911 16SAMP-737 16SAMP-4591 16SAMP-745 16SAMP-706 16SAMP-3946 16S-AMP-1101 16SAMP-10896 16SAMP-10891 16SAMP-748 16SAMP-725 16SAMP-730 16S-AMP-1107 16SAMP-727 +OTU_95 1 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f__Lactobacillaceae g__Lactobacillus s__ OTU_13504 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__uncultured s__ OTU_173 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Lachnospiraceae OTU_11006 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__uncultured s__ OTU_9035 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales OTU_8165 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Comamonadaceae g__Ramlibacter s__ OTU_1707 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__TK34 g__ s__ OTU_4805 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Bradyrhizobiaceae g__Bosea s__ OTU_7801 +k__Bacteria p__Hydrogenedentes c__ o__ f__ g__ s__ OTU_6106 +k__Bacteria p__Synergistetes c__Synergistia o__Synergistales f__Synergistaceae g__uncultured s__ OTU_9681 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Desulfobacterales f__Desulfobulbaceae g__Desulfobulbus s__ OTU_4039 +k__Bacteria p__Actinobacteria c__Thermoleophilia o__Gaiellales f__BVA77 g__ s__ OTU_4338 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae OTU_1634 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__env.OPS 17 g__ s__ OTU_684 +k__Bacteria p__Actinobacteria c__Acidimicrobiia o__Acidimicrobiales OTU_496 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Nocardioidaceae g__Nocardioides s__ OTU_3941 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__DUNssu044 g__ s__ OTU_4193 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Prevotellaceae g__uncultured s__ OTU_9455 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Family XII g__Fusibacter s__ OTU_7842 +k__Bacteria p__Planctomycetes c__Phycisphaerae o__Phycisphaerales f__Phycisphaeraceae g__uncultured s__ OTU_13494 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Chitinophagaceae g__uncultured s__ OTU_1285 +k__Bacteria p__Chloroflexi c__WCHB1-50 o__WCHB1-50 f__WCHB1-50 g__SM1F10 s__ OTU_132 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Hyphomicrobiaceae g__Hyphomicrobium s__ OTU_10641 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Rhodocyclales f__Rhodocyclaceae OTU_236 +k__Bacteria p__Deinococcus-Thermus c__Deinococci o__Thermales f__Thermaceae g__Meiothermus s__ OTU_462 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Hyphomicrobiaceae g__Hyphomicrobium s__ OTU_161 +k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Carnobacteriaceae g__Trichococcus s__ OTU_13660 +k__Bacteria p__Chlorobi c__Ignavibacteria o__Ignavibacteriales f__PHOS-HE36 g__oca15 s__ OTU_9412 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Myxococcales OTU_7504 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Comamonadaceae g__Simplicispira s__ OTU_318 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Family XIII OTU_7070 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Hyphomicrobiaceae OTU_288 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Myxococcales f__Sandaracinaceae g__Sandaracinus s__ OTU_2415 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Bdellovibrionales f__Bdellovibrionaceae g__OM27 clade s__ OTU_95 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__Mitochondria g__ s__ OTU_3982 +k__Bacteria p__Verrucomicrobia c__Verrucomicrobiae o__Verrucomicrobiales f__Verrucomicrobiaceae g__uncultured s__ OTU_4278 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae OTU_2887 +k__Bacteria p__Chloroflexi c__Anaerolineae o__Anaerolineales f__Anaerolineaceae g__uncultured s__ OTU_5684 +k__Bacteria OTU_4220 +k__Bacteria OTU_7051 +k__Bacteria p__Actinobacteria c__Coriobacteriia o__Coriobacteriales f__Coriobacteriaceae g__Collinsella s__ OTU_11398 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Nordellaceae g__MNG7 s__ OTU_4669 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Acetobacteraceae g__Roseomonas s__ OTU_4697 +k__Bacteria p__Chloroflexi c__Anaerolineae o__Anaerolineales f__Anaerolineaceae OTU_6765 +k__Bacteria p__Planctomycetes c__Planctomycetacia o__Planctomycetales f__Planctomycetaceae g__Pirellula s__ OTU_1066 +k__Bacteria p__Planctomycetes c__Planctomycetacia o__Planctomycetales f__Planctomycetaceae g__uncultured s__ OTU_5907 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Clostridiaceae 1 g__Clostridium sensu stricto 1 s__ OTU_4933 +k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Lactobacillaceae g__Lactobacillus s__ OTU_8885 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__Candidatus Defluviifilum s__ OTU_4226 +k__Bacteria p__Proteobacteria c__TA18 o__ f__ g__ s__ OTU_1821 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Peptostreptococcaceae g__Acetoanaerobium s__ OTU_1794 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__env.OPS 17 g__ s__ OTU_3925 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Acetobacteraceae OTU_3353 +k__Bacteria p__GOUTA4 c__ o__ f__ g__ s__ OTU_7163 +k__Bacteria p__Acidobacteria c__Acidobacteria o__Subgroup 6 f__ g__ s__ OTU_541 +k__Bacteria p__Bacteroidetes c__Flavobacteriia o__Flavobacteriales f__Flavobacteriaceae g__Flavobacterium s__ OTU_1521 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__Holosporaceae g__uncultured s__ OTU_14421 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__uncultured s__ OTU_2972 +k__Bacteria p__Nitrospirae c__Nitrospira o__Nitrospirales f__Nitrospiraceae g__Nitrospira s__sublineage I OTU_8291 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Chitinophagaceae g__uncultured s__ OTU_289 +k__Bacteria p__WCHB1-60 c__ o__ f__ g__ s__ OTU_1306 +k__Bacteria p__Planctomycetes c__Phycisphaerae o__WD2101 soil group f__ g__ s__ OTU_4839 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae g__Propioniciclava s__ OTU_11689 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Porphyromonadaceae g__Parabacteroides s__ OTU_12665 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae OTU_2085 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__uncultured s__ OTU_448 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Actinomycetaceae g__Actinomyces s__ OTU_6935 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Nocardioidaceae g__Aeromicrobium s__ OTU_190 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Family XI g__uncultured s__ OTU_4458 +k__Bacteria OTU_927 +k__Bacteria p__Chlorobi c__Chlorobia o__Chlorobiales f__Chlorobiaceae g__ s__ OTU_5113 +k__Bacteria p__Bacteroidetes c__Flavobacteriia o__Flavobacteriales f__NS9 marine group g__ s__ OTU_1875 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Clostridiaceae 1 g__Clostridium sensu stricto 6 s__ OTU_9228 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Rhodospirillales Incertae Sedis g__Reyranella s__ OTU_1845 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Clostridiaceae 1 g__Proteiniclasticum s__ OTU_6255 +k__Bacteria p__Acidobacteria c__Holophagae o__Subgroup 10 f__ABS-19 g__B1-K1A-105 s__ OTU_1479 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Prevotellaceae g__Prevotellaceae UCG-004 s__ OTU_14146 +k__Bacteria p__Elusimicrobia c__Elusimicrobia o__Lineage IIb f__ g__ s__ OTU_6507 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Myxococcales f__Haliangiaceae g__Haliangium s__ OTU_7542 +k__Bacteria p__Firmicutes c__Bacilli o__Bacillales f__Bacillaceae g__Ureibacillus s__ OTU_13718 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Oligoflexales f__ g__ s__ OTU_4593 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae g__Ruminococcus 2 s__ OTU_2343 +k__Bacteria OTU_8708 +k__Bacteria p__SM2F11 c__ o__ f__ g__ s__ OTU_2677 +k__Bacteria p__Actinobacteria c__Acidimicrobiia o__Acidimicrobiales OTU_9665 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__CYCU-0281 s__ OTU_81 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Chitinophagaceae g__Parafilimonas s__ OTU_6422 +k__Bacteria p__Proteobacteria c__TA18 o__ f__ g__ s__ OTU_1612 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Actinomycetaceae g__Actinomyces s__ OTU_3216 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae g__Aestuariimicrobium s__ OTU_9248 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__uncultured s__ OTU_5187 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae g__Ruminiclostridium 1 s__ OTU_7882 +k__Bacteria p__Saccharibacteria c__ o__ f__ g__ s__ OTU_1543 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Micrococcales f__Microbacteriaceae g__Diaminobutyricimonas s__ OTU_11775 +k__Bacteria p__Actinobacteria c__Thermoleophilia o__Solirubrobacterales f__480-2 g__K2-78 s__ OTU_233 +k__Bacteria p__Firmicutes c__Erysipelotrichia o__Erysipelotrichales f__Erysipelotrichaceae g__Erysipelatoclostridium s__ OTU_4015 +k__Bacteria p__TM6 c__ o__ f__ g__ s__ OTU_8260 +k__Bacteria p__Actinobacteria c__Acidimicrobiia o__Acidimicrobiales f__Acidimicrobiaceae g__CL500-29 marine group s__ OTU_9548 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Bacteroidaceae g__Bacteroides s__ OTU_5643 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae g__Tessaracoccus s__ OTU_1586 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Corynebacteriales f__Nocardiaceae g__Gordonia s__ OTU_3782 +k__Bacteria p__Actinobacteria c__Coriobacteriia o__Coriobacteriales f__Coriobacteriaceae g__Senegalimassilia s__ OTU_2934 +k__Bacteria p__Armatimonadetes c__ o__ f__ g__ s__ OTU_14570 +k__Bacteria p__Actinobacteria c__Coriobacteriia o__Coriobacteriales f__Coriobacteriaceae g__Atopobium s__ OTU_11781 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Porphyromonadaceae g__Proteiniphilum s__ OTU_3700 +k__Bacteria OTU_6318 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Rhodocyclales f__Rhodocyclaceae g__Uliginosibacterium s__ OTU_2148 +k__Bacteria p__Chloroflexi c__WCHB1-50 o__WCHB1-50 f__WCHB1-50 g__WCHB1-50 s__ OTU_2244 +k__Bacteria p__Bacteroidetes c__BSV13 o__ f__ g__ s__ OTU_7867 +k__Bacteria p__Actinobacteria c__Thermoleophilia o__Solirubrobacterales f__480-2 g__K2-78 s__ OTU_14248 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Myxococcales f__bacteriap25 g__ s__ OTU_12704 +k__Bacteria p__Chloroflexi c__Thermomicrobia o__JG30-KF-CM45 f__ g__ s__ OTU_364 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Christensenellaceae g__Christensenellaceae R-7 group s__ OTU_8245 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae OTU_10847 +k__Bacteria p__Acidobacteria c__Holophagae o__Holophagales f__Holophagaceae OTU_1151 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Micrococcales f__Intrasporangiaceae g__Fodinibacter s__ OTU_1998 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Rhodospirillaceae g__Defluviicoccus s__cluster I OTU_10321 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Comamonadaceae g__Acidovorax s__ OTU_4721 +k__Bacteria p__Verrucomicrobia c__OPB35 soil group o__ f__ g__ s__ OTU_6237 +k__Bacteria p__Saccharibacteria c__Unknown Class o__FW73 OTU_1972 +k__Bacteria p__Elusimicrobia c__Elusimicrobia o__Lineage IIb f__ g__ s__ OTU_11364 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Micrococcales f__Beutenbergiaceae g__Salana s__ OTU_1816 +k__Bacteria p__Actinobacteria c__Actinobacteria o__Propionibacteriales f__Propionibacteriaceae g__Propionimicrobium s__ OTU_14842 +k__Bacteria p__Fusobacteria c__Fusobacteriia o__Fusobacteriales f__Leptotrichiaceae g__uncultured s__ OTU_6533 +k__Bacteria p__Tenericutes c__Mollicutes o__Mollicutes RF9 f__ g__ s__ OTU_8887 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__Litorilinea s__ OTU_12690 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Clostridiaceae 1 g__Proteiniclasticum s__ OTU_3097 +k__Bacteria p__Firmicutes c__Erysipelotrichia o__Erysipelotrichales f__Erysipelotrichaceae g__Faecalitalea s__ OTU_3257 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Acetobacteraceae g__uncultured s__ OTU_3161 +k__Bacteria p__Actinobacteria c__Thermoleophilia o__Solirubrobacterales f__480-2 g__ s__ OTU_11903 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae g__Ruminiclostridium 5 s__ OTU_7508 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Oligoflexales f__ g__ s__ OTU_10969 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__Oligoflexales f__Oligoflexaceae g__ s__ OTU_1801 +k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Neisseriales f__Neisseriaceae g__Rivicola s__ OTU_3488 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria o__GR-WP33-30 f__ g__ s__ OTU_933 +k__Bacteria p__Lentisphaerae c__PBS-III-20 o__ f__ g__ s__ OTU_3824 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__AKIW1012 g__ s__ OTU_777 +k__Bacteria p__TM6 c__ o__ f__ g__ s__ OTU_3169 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae g__[Eubacterium] coprostanoligenes group s__ OTU_12385 +k__Bacteria p__Armatimonadetes c__ o__ f__ g__ s__ OTU_1496 +k__Bacteria p__Actinobacteria c__Acidimicrobiia o__Acidimicrobiales f__Microthricaceae g__ s__ OTU_11294 +k__Bacteria p__Bacteroidetes c__Sphingobacteriia o__Sphingobacteriales f__Saprospiraceae g__Lewinella s__ OTU_1968 +k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales OTU_8832 +k__Bacteria p__Proteobacteria c__Deltaproteobacteria OTU_8652 +k__Bacteria p__Chlorobi c__Chlorobia o__Chlorobiales f__OPB56 g__ s__ OTU_13621 +k__Bacteria p__Microgenomates c__ o__ f__ g__ s__ OTU_3043 +k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae OTU_10760 +k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Bacteroidaceae g__Bacteroides s__ OTU_14173 +k__Bacteria p__Cyanobacteria c__Chloroplast o__ f__ g__ s__ OTU_10746 +k__Bacteria p__Chloroflexi c__Caldilineae o__Caldilineales f__Caldilineaceae g__uncultured s__ OTU_284 +k__Bacteria p__Saccharibacteria c__ o__ f__ g__ s__ OTU_5049 +k__Bacteria p__Chloroflexi c__Anaerolineae o__Anaerolineales f__Anaerolineaceae g__uncultured s__ OTU_2397 +k__Bacteria p__Planctomycetes c__Planctomycetacia o__Planctomycetales f__Planctomycetaceae g__uncultured s__ OTU_2913 +k__Bacteria p__Bacteroidetes OTU_9512 diff -r 000000000000 -r 132d2a794152 test-data/AalborgWWTPs.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/AalborgWWTPs.tsv Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,68 @@ +SampleID Plant Date Year Period +16SAMP-747 16SAMP-747 Aalborg East 2010-02-04 2010 Winter +16S-AMP-1168 16S-AMP-1168 Aalborg West 2013-05-06 2013 Spring +16SAMP-4603 16SAMP-4603 Aalborg East 2014-08-19 2014 Summer +16S-AMP-1149 16S-AMP-1149 Aalborg East 2013-10-28 2013 Fall +16SAMP-537 16SAMP-537 Aalborg West 2010-08-19 2010 Summer +16S-AMP-1114 16S-AMP-1114 Aalborg West 2013-02-04 2013 Winter +16SAMP-3893 16SAMP-3893 Aalborg East 2014-02-06 2014 Winter +16SAMP-703 16SAMP-703 Aalborg East 2006-02-04 2006 Winter +16SAMP-638 16SAMP-638 Aalborg East 2012-10-28 2012 Fall +16SAMP-2611 16SAMP-2611 Aalborg East 2011-02-04 2011 Winter +16S-AMP-1100 16S-AMP-1100 Aalborg West 2012-08-19 2012 Summer +16SAMP-608 16SAMP-608 Aalborg East 2011-10-28 2011 Fall +16SAMP-636 16SAMP-636 Aalborg East 2012-05-06 2012 Spring +16SAMP-13288 16SAMP-13288 Aalborg West 2015-02-09 2015 Winter +16SAMP-719 16SAMP-719 Aalborg East 2007-08-19 2007 Summer +16S-AMP-1098 16S-AMP-1098 Aalborg West 2012-02-04 2012 Winter +16SAMP-536 16SAMP-536 Aalborg West 2010-05-06 2010 Spring +16S-AMP-1169 16S-AMP-1169 Aalborg West 2013-08-19 2013 Summer +16SAMP-635 16SAMP-635 Aalborg East 2012-02-04 2012 Winter +16SAMP-637 16SAMP-637 Aalborg East 2012-08-19 2012 Summer +16SAMP-717 16SAMP-717 Aalborg East 2007-02-04 2007 Winter +16S-AMP-1148 16S-AMP-1148 Aalborg East 2013-08-19 2013 Summer +16SAMP-735 16SAMP-735 Aalborg West 2008-05-06 2008 Spring +16SAMP-729 16SAMP-729 Aalborg East 2008-08-19 2008 Summer +16SAMP-738 16SAMP-738 Aalborg East 2009-02-04 2009 Winter +16SAMP-2613 16SAMP-2613 Aalborg West 2011-08-19 2011 Summer +16SAMP-10925 16SAMP-10925 Aalborg East 2015-10-27 2015 Fall +16SAMP-3913 16SAMP-3913 Aalborg East 2014-07-03 2014 Summer +16SAMP-716 16SAMP-716 Aalborg West 2006-02-04 2006 Winter +16SAMP-726 16SAMP-726 Aalborg West 2007-08-19 2007 Summer +16SAMP-728 16SAMP-728 Aalborg East 2008-05-06 2008 Spring +16SAMP-625 16SAMP-625 Aalborg West 2011-02-04 2011 Winter +16SAMP-736 16SAMP-736 Aalborg West 2008-08-19 2008 Summer +16SAMP-13281 16SAMP-13281 Aalborg East 2015-02-10 2015 Winter +16SAMP-626 16SAMP-626 Aalborg West 2011-10-28 2011 Fall +16SAMP-704 16SAMP-704 Aalborg East 2006-05-06 2006 Spring +16SAMP-2612 16SAMP-2612 Aalborg East 2011-08-19 2011 Summer +16SAMP-746 16SAMP-746 Aalborg West 2009-05-06 2009 Spring +16SAMP-522 16SAMP-522 Aalborg East 2010-10-28 2010 Fall +16SAMP-516 16SAMP-516 Aalborg West 2009-10-28 2009 Fall +16S-AMP-1170 16S-AMP-1170 Aalborg West 2013-10-28 2013 Fall +16S-AMP-1099 16S-AMP-1099 Aalborg West 2012-05-06 2012 Spring +16SAMP-10932 16SAMP-10932 Aalborg West 2015-10-27 2015 Fall +16SAMP-740 16SAMP-740 Aalborg East 2009-10-28 2009 Fall +16SAMP-739 16SAMP-739 Aalborg East 2009-05-06 2009 Spring +16SAMP-4597 16SAMP-4597 Aalborg West 2014-05-05 2014 Spring +16SAMP-535 16SAMP-535 Aalborg West 2010-02-04 2010 Winter +16SAMP-3941 16SAMP-3941 Aalborg West 2014-08-18 2014 Summer +16SAMP-3953 16SAMP-3953 Aalborg West 2014-11-12 2014 Fall +16SAMP-720 16SAMP-720 Aalborg East 2007-10-28 2007 Fall +16SAMP-705 16SAMP-705 Aalborg East 2006-08-19 2006 Summer +16SAMP-10907 16SAMP-10907 Aalborg East 2015-08-24 2015 Summer +16SAMP-538 16SAMP-538 Aalborg West 2010-10-28 2010 Fall +16SAMP-10911 16SAMP-10911 Aalborg West 2015-08-24 2015 Summer +16SAMP-737 16SAMP-737 Aalborg West 2008-10-28 2008 Fall +16SAMP-4591 16SAMP-4591 Aalborg West 2014-02-04 2014 Winter +16SAMP-745 16SAMP-745 Aalborg West 2009-02-04 2009 Winter +16SAMP-706 16SAMP-706 Aalborg East 2006-10-28 2006 Fall +16SAMP-3946 16SAMP-3946 Aalborg East 2014-11-13 2014 Fall +16S-AMP-1101 16S-AMP-1101 Aalborg West 2012-10-28 2012 Fall +16SAMP-10896 16SAMP-10896 Aalborg West 2015-05-04 2015 Spring +16SAMP-10891 16SAMP-10891 Aalborg East 2015-05-04 2015 Spring +16SAMP-748 16SAMP-748 Aalborg East 2010-05-06 2010 Spring +16SAMP-725 16SAMP-725 Aalborg West 2007-02-04 2007 Winter +16SAMP-730 16SAMP-730 Aalborg East 2008-10-28 2008 Fall +16S-AMP-1107 16S-AMP-1107 Aalborg East 2013-05-06 2013 Spring +16SAMP-727 16SAMP-727 Aalborg East 2008-02-04 2008 Winter diff -r 000000000000 -r 132d2a794152 test-data/generate.R --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/generate.R Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,10 @@ +library(ampvis2) + +# subset taxa using 200 random OTUs +aalborgwwtps <- amp_subset_taxa(AalborgWWTPs, tax_vector = sample(AalborgWWTPs$tax$OTU, 200)) + +ape::write.tree(aalborgwwtps$tree, "AalborgWWTPs.nwk") +amp_export_fasta(aalborgwwtps, "AalborgWWTPs.fa", tax = F) +amp_export_otutable(aalborgwwtps, "AalborgWWTPs.otu") +write.table(aalborgwwtps$tax, file = "AalborgWWTPs.tax", quote = F, sep = "\t", row.names = F) +write.table(aalborgwwtps$metadata, file = "AalborgWWTPs.tsv", quote = F, sep = "\t") diff -r 000000000000 -r 132d2a794152 test-data/generate.sh --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/generate.sh Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,5 @@ + +Rscript generate.R + +sed -i -e 's/"//g' AalborgWWTPs.tax + diff -r 000000000000 -r 132d2a794152 test-data/min_sparse_otu_table_hdf5.biom Binary file test-data/min_sparse_otu_table_hdf5.biom has changed diff -r 000000000000 -r 132d2a794152 test-data/min_sparse_otu_table_hdf5.rds Binary file test-data/min_sparse_otu_table_hdf5.rds has changed diff -r 000000000000 -r 132d2a794152 test-data/rich-dense.biom --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rich-dense.biom Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,55 @@ +{ + "id":null, + "format": "Biological Observation Matrix 0.9.1-dev", + "format_url": "http://biom-format.org/documentation/format_versions/biom-1.0.html", + "type": "OTU table", + "generated_by": "QIIME revision 1.4.0-dev", + "date": "2011-12-19T19:00:00", + "rows":[ + {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}, + {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}}, + {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}}, + {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}}, + {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}} + ], + "columns":[ + {"id":"Sample1", "metadata":{ + "BarcodeSequence":"CGCTTATCGAGA", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample2", "metadata":{ + "BarcodeSequence":"CATACCAGTAGC", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample3", "metadata":{ + "BarcodeSequence":"CTCTCTACCTGT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample4", "metadata":{ + "BarcodeSequence":"CTCTCGGCCTGT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}}, + {"id":"Sample5", "metadata":{ + "BarcodeSequence":"CTCTCTACCAAT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}}, + {"id":"Sample6", "metadata":{ + "BarcodeSequence":"CTAACTACCAAT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}} + ], + "matrix_type": "dense", + "matrix_element_type": "int", + "shape": [5,6], + "data": [[0,0,1,0,0,0], + [5,1,0,2,3,1], + [0,0,1,4,2,0], + [2,1,1,0,0,1], + [0,1,1,0,0,0]] +} diff -r 000000000000 -r 132d2a794152 test-data/rich-dense.rds Binary file test-data/rich-dense.rds has changed diff -r 000000000000 -r 132d2a794152 test-data/rich-sparse.biom --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rich-sparse.biom Mon Apr 04 10:20:48 2022 +0000 @@ -0,0 +1,66 @@ +{ + "id":"w00asdt", + "format": "1.0.0", + "format_url": "http://biom-format.org", + "type": "OTU table", + "generated_by": "QIIME revision XYZ", + "date": "2011-12-19T19:00:00", + "rows":[ + {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}, + {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}}, + {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}}, + {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}}, + {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}} + ], + "columns":[ + {"id":"Sample1", "metadata":{ + "BarcodeSequence":"CGCTTATCGAGA", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample2", "metadata":{ + "BarcodeSequence":"CATACCAGTAGC", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample3", "metadata":{ + "BarcodeSequence":"CTCTCTACCTGT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"gut", + "Description":"human gut"}}, + {"id":"Sample4", "metadata":{ + "BarcodeSequence":"CTCTCGGCCTGT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}}, + {"id":"Sample5", "metadata":{ + "BarcodeSequence":"CTCTCTACCAAT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}}, + {"id":"Sample6", "metadata":{ + "BarcodeSequence":"CTAACTACCAAT", + "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", + "BODY_SITE":"skin", + "Description":"human skin"}} + ], + "matrix_type": "sparse", + "matrix_element_type": "int", + "shape": [5, 6], + "data":[[0,2,1], + [1,0,5], + [1,1,1], + [1,3,2], + [1,4,3], + [1,5,1], + [2,2,1], + [2,3,4], + [2,5,2], + [3,0,2], + [3,1,1], + [3,2,1], + [3,5,1], + [4,1,1], + [4,2,1] + ] + } diff -r 000000000000 -r 132d2a794152 test-data/rich-sparse.rds Binary file test-data/rich-sparse.rds has changed diff -r 000000000000 -r 132d2a794152 test-data/rich_sparse_otu_table_hdf5.biom Binary file test-data/rich_sparse_otu_table_hdf5.biom has changed diff -r 000000000000 -r 132d2a794152 test-data/rich_sparse_otu_table_hdf5.rds Binary file test-data/rich_sparse_otu_table_hdf5.rds has changed