comparison macros.xml @ 5:024a22e84bea draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 9ed0c3078be166bd22136771f517ae91a5198ecf

4:b8fd62239d7e

<macros>
    <token name="@TOOL_VERSION@">2.8.6</token>
    <token name="@VERSION_SUFFIX@">1</token>
    <token name="@PROFILE@">22.01</token>
    <xml name="header">
        <xrefs>
            <xref type="bio.tools">ampvis</xref>
        </xrefs>

                }
    ]]></token>

    <token name="@SAVE_METADATA_LIST@"><![CDATA[
                classes <- sapply(data\$metadata, class)
                for(name in names(data\$metadata)){
                    ## check if it is the column containing the sample names
                    ## the additional column in the ist file can the be used
                    ## to filter SampleIDs from select inputs
                    ## (check for character columns only .. since data in the column is otherwise converted to the corresponding type .. which fails)

5:024a22e84bea

<macros>
    <token name="@TOOL_VERSION@">2.8.6</token>
    <token name="@VERSION_SUFFIX@">2</token>
    <token name="@PROFILE@">22.01</token>
    <xml name="header">
        <xrefs>
            <xref type="bio.tools">ampvis</xref>
        </xrefs>

                }
    ]]></token>

    <token name="@SAVE_METADATA_LIST@"><![CDATA[
                classes <- sapply(data\$metadata, class)
                data\$metadata[is.na(data\$metadata)] <- "NA" ##the comparison below fails if NA values are present, see https://stackoverflow.com/questions/7355187/error-in-if-while-condition-missing-value-where-true-false-needed
                for(name in names(data\$metadata)){
                    ## check if it is the column containing the sample names
                    ## the additional column in the ist file can the be used
                    ## to filter SampleIDs from select inputs
                    ## (check for character columns only .. since data in the column is otherwise converted to the corresponding type .. which fails)