Mercurial > repos > iuc > ampvis2_setmetadata
view test-data/rich-sparse.biom @ 6:cfd7bafb820f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit cb30e4b8d695e096753fe7cb5056b118b25a87fd
author | iuc |
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date | Mon, 26 Aug 2024 16:10:49 +0000 |
parents | 7499e3a586c0 |
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{ "id":"w00asdt", "format": "1.0.0", "format_url": "http://biom-format.org", "type": "OTU table", "generated_by": "QIIME revision XYZ", "date": "2011-12-19T19:00:00", "rows":[ {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}, {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}}, {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}}, {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}}, {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}} ], "columns":[ {"id":"Sample1", "metadata":{ "BarcodeSequence":"CGCTTATCGAGA", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample2", "metadata":{ "BarcodeSequence":"CATACCAGTAGC", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample3", "metadata":{ "BarcodeSequence":"CTCTCTACCTGT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"gut", "Description":"human gut"}}, {"id":"Sample4", "metadata":{ "BarcodeSequence":"CTCTCGGCCTGT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"skin", "Description":"human skin"}}, {"id":"Sample5", "metadata":{ "BarcodeSequence":"CTCTCTACCAAT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"skin", "Description":"human skin"}}, {"id":"Sample6", "metadata":{ "BarcodeSequence":"CTAACTACCAAT", "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", "BODY_SITE":"skin", "Description":"human skin"}} ], "matrix_type": "sparse", "matrix_element_type": "int", "shape": [5, 6], "data":[[0,2,1], [1,0,5], [1,1,1], [1,3,2], [1,4,3], [1,5,1], [2,2,1], [2,3,4], [2,5,2], [3,0,2], [3,1,1], [3,2,1], [3,5,1], [4,1,1], [4,2,1] ] }