diff test-data/AalborgWWTPs-taxonomy.list @ 3:ceda8519e440 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ampvis2 commit 5b6fb9641a1320e13aba367c4e7bc52ae064acc6

--- a/test-data/AalborgWWTPs-taxonomy.list	Mon Dec 18 09:41:35 2023 +0000
+++ b/test-data/AalborgWWTPs-taxonomy.list	Mon Feb 26 07:57:23 2024 +0000
@@ -1,495 +1,495 @@
-k__Bacteria
-p__Firmicutes
-p__Bacteroidetes
-p__Proteobacteria
-p__Actinobacteria
-p__Hydrogenedentes
-p__Parcubacteria
-p__Planctomycetes
-p__Acidobacteria
-p__Chloroflexi
-
-p__Saccharibacteria
-p__Candidate division SR1
-p__Cyanobacteria
-p__Synergistetes
-p__Deinococcus-Thermus
-p__Chlorobi
-p__Verrucomicrobia
-p__GOUTA4
-p__Nitrospirae
-p__WCHB1-60
-p__Elusimicrobia
-p__SM2F11
-p__TM6
-p__Armatimonadetes
-p__Fusobacteria
-p__Tenericutes
-p__Lentisphaerae
-p__Microgenomates
-c__Clostridia
-c__Cytophagia
-c__Betaproteobacteria
-c__Actinobacteria
-c__Gammaproteobacteria
-c__Deltaproteobacteria
-c__Bacilli
-c__
-c__Sphingobacteriia
-c__Planctomycetacia
-c__Holophagae
-c__Chloroflexia
-c__Caldilineae
-
-c__Anaerolineae
-c__Flavobacteriia
-c__Negativicutes
-c__Alphaproteobacteria
-c__Unknown Class
-c__Cyanobacteria
-c__Synergistia
-c__Thermoleophilia
-c__Acidimicrobiia
-c__Bacteroidia
-c__Phycisphaerae
-c__WCHB1-50
-c__Deinococci
-c__Ignavibacteria
-c__Verrucomicrobiae
-c__Coriobacteriia
-c__TA18
-c__Acidobacteria
-c__Nitrospira
-c__Chlorobia
-c__Elusimicrobia
-c__Erysipelotrichia
-c__BSV13
-c__Thermomicrobia
-c__OPB35 soil group
-c__Fusobacteriia
-c__Mollicutes
-c__PBS-III-20
-c__Chloroplast
-o__Clostridiales
-o__Cytophagales
-o__Nitrosomonadales
-o__Micrococcales
-o__Xanthomonadales
-o__Desulfobacterales
-o__Bacillales
-o__
-o__Sphingobacteriales
-o__Planctomycetales
-o__Holophagales
-o__Propionibacteriales
-o__Chloroflexales
-o__PeM15
-o__Caldilineales
-o__Rhodocyclales
-
-o__Myxococcales
-o__Lactobacillales
-o__Anaerolineales
-o__Flavobacteriales
-o__Selenomonadales
-o__Rhodospirillales
-o__Unknown Order
-o__SubsectionIII
-o__Burkholderiales
-o__Rickettsiales
-o__Rhizobiales
-o__Synergistales
-o__Gaiellales
-o__Acidimicrobiales
-o__Bacteroidales
-o__Phycisphaerales
-o__WCHB1-50
-o__Thermales
-o__Ignavibacteriales
-o__Bdellovibrionales
-o__Verrucomicrobiales
-o__Coriobacteriales
-o__Subgroup 6
-o__Nitrospirales
-o__WD2101 soil group
-o__Actinomycetales
-o__Chlorobiales
-o__Subgroup 10
-o__Lineage IIb
-o__Oligoflexales
-o__Solirubrobacterales
-o__Erysipelotrichales
-o__Corynebacteriales
-o__JG30-KF-CM45
-o__FW73
-o__Fusobacteriales
-o__Mollicutes RF9
-o__Neisseriales
-o__GR-WP33-30
-f__Lachnospiraceae
-f__Ruminococcaceae
-f__Cytophagaceae
-f__Nitrosomonadaceae
-f__Intrasporangiaceae
-f__Xanthomonadaceae
-f__Desulfobacteraceae
-f__Planococcaceae
-f__
-f__Dermatophilaceae
-f__AKYH767
-f__Planctomycetaceae
-f__Holophagaceae
-f__Propionibacteriaceae
-f__Roseiflexaceae
-f__PeM15
-f__Caldilineaceae
-f__Rhodocyclaceae
-
-f__Blfdi19
-f__Lactobacillaceae
-f__Anaerolineaceae
-f__Flavobacteriaceae
-f__Veillonellaceae
-f__Acetobacteraceae
-f__mle1-27
-f__SBR2060
-f__FamilyI
-f__Microbacteriaceae
-f__Saprospiraceae
-f__Comamonadaceae
-f__TK34
-f__Bradyrhizobiaceae
-f__Synergistaceae
-f__Desulfobulbaceae
-f__BVA77
-f__env.OPS 17
-f__Nocardioidaceae
-f__DUNssu044
-f__Prevotellaceae
-f__Family XII
-f__Phycisphaeraceae
-f__Chitinophagaceae
-f__WCHB1-50
-f__Hyphomicrobiaceae
-f__Thermaceae
-f__Carnobacteriaceae
-f__PHOS-HE36
-f__Family XIII
-f__Sandaracinaceae
-f__Bdellovibrionaceae
-f__Mitochondria
-f__Verrucomicrobiaceae
-f__Coriobacteriaceae
-f__Nordellaceae
-f__Clostridiaceae 1
-f__Peptostreptococcaceae
-f__Holosporaceae
-f__Nitrospiraceae
-f__Porphyromonadaceae
-f__Actinomycetaceae
-f__Family XI
-f__Chlorobiaceae
-f__NS9 marine group
-f__Rhodospirillales Incertae Sedis
-f__ABS-19
-f__Haliangiaceae
-f__Bacillaceae
-f__480-2
-f__Erysipelotrichaceae
-f__Acidimicrobiaceae
-f__Bacteroidaceae
-f__Nocardiaceae
-f__bacteriap25
-f__Christensenellaceae
-f__Rhodospirillaceae
-f__Beutenbergiaceae
-f__Leptotrichiaceae
-f__Oligoflexaceae
-f__Neisseriaceae
-f__AKIW1012
-f__Microthricaceae
-f__OPB56
-g__Acetitomaculum
-g__Ruminococcaceae UCG-005
-g__Dyadobacter
-g__Nitrosomonas
-g__Tetrasphaera
-
-g__Desulforegula
-g__Rummeliibacillus
-g__
-g__Fusicatenibacter
-g__Ruminiclostridium 1
-g__uncultured
-g__Brooklawnia
-g__Sulfuritalea
-g__Lactobacillus
-g__Flavobacterium
-g__Acidicaldus
-g__Candidatus Defluviifilum
-g__Ruminococcaceae UCG-010
-g__SBR2113
-g__Subdoligranulum
-g__Ramlibacter
-g__Bosea
-g__Desulfobulbus
-g__Nocardioides
-g__Fusibacter
-g__SM1F10
-g__Hyphomicrobium
-g__Meiothermus
-g__Trichococcus
-g__oca15
-g__Simplicispira
-g__Sandaracinus
-g__OM27 clade
-g__Collinsella
-g__MNG7
-g__Roseomonas
-g__Pirellula
-g__Clostridium sensu stricto 1
-g__Acetoanaerobium
-g__Nitrospira
-g__Propioniciclava
-g__Parabacteroides
-g__Actinomyces
-g__Aeromicrobium
-g__Clostridium sensu stricto 6
-g__Reyranella
-g__Proteiniclasticum
-g__B1-K1A-105
-g__Prevotellaceae UCG-004
-g__Haliangium
-g__Ureibacillus
-g__Ruminococcus 2
-g__CYCU-0281
-g__Parafilimonas
-g__Aestuariimicrobium
-g__Diaminobutyricimonas
-g__K2-78
-g__Erysipelatoclostridium
-g__CL500-29 marine group
-g__Bacteroides
-g__Tessaracoccus
-g__Gordonia
-g__Senegalimassilia
-g__Atopobium
-g__Proteiniphilum
-g__Uliginosibacterium
-g__WCHB1-50
-g__Christensenellaceae R-7 group
-g__Fodinibacter
-g__Defluviicoccus
-g__Acidovorax
-g__Salana
-g__Propionimicrobium
-g__Litorilinea
-g__Faecalitalea
-g__Ruminiclostridium 5
-g__Rivicola
-g__[Eubacterium] coprostanoligenes group
-g__Lewinella
-s__
-
-s__sublineage I
-s__cluster I
-OTU_8735
-OTU_13382
-OTU_5516
-OTU_8315
-OTU_10522
-OTU_11040
-OTU_7263
-OTU_13379
-OTU_1418
-OTU_556
-OTU_6869
-OTU_10171
-OTU_2830
-OTU_4232
-OTU_12831
-OTU_613
-OTU_3625
-OTU_3605
-OTU_11148
-OTU_656
-OTU_4382
-OTU_3834
-OTU_13127
-OTU_4528
-OTU_4485
-OTU_12265
-OTU_11820
-OTU_4093
-OTU_8360
-OTU_15123
-OTU_11928
-OTU_11334
-OTU_4511
-OTU_3265
-OTU_2991
-OTU_522
-OTU_11832
-OTU_6358
-OTU_3611
-OTU_1408
-OTU_7471
-OTU_14124
-OTU_13012
-OTU_8113
-OTU_11414
-OTU_2232
-OTU_13504
-OTU_173
-OTU_11006
-OTU_9035
-OTU_8165
-OTU_1707
-OTU_4805
-OTU_7801
-OTU_6106
-OTU_9681
-OTU_4039
-OTU_4338
-OTU_1634
-OTU_684
-OTU_496
-OTU_3941
-OTU_4193
-OTU_9455
-OTU_7842
-OTU_13494
-OTU_1285
-OTU_132
-OTU_10641
-OTU_236
-OTU_462
-OTU_161
-OTU_13660
-OTU_9412
-OTU_7504
-OTU_318
-OTU_7070
-OTU_288
-OTU_2415
-OTU_95
-OTU_3982
-OTU_4278
-OTU_2887
-OTU_5684
-OTU_4220
-OTU_7051
-OTU_11398
-OTU_4669
-OTU_4697
-OTU_6765
-OTU_1066
-OTU_5907
-OTU_4933
-OTU_8885
-OTU_4226
-OTU_1821
-OTU_1794
-OTU_3925
-OTU_3353
-OTU_7163
-OTU_541
-OTU_1521
-OTU_14421
-OTU_2972
-OTU_8291
-OTU_289
-OTU_1306
-OTU_4839
-OTU_11689
-OTU_12665
-OTU_2085
-OTU_448
-OTU_6935
-OTU_190
-OTU_4458
-OTU_927
-OTU_5113
-OTU_1875
-OTU_9228
-OTU_1845
-OTU_6255
-OTU_1479
-OTU_14146
-OTU_6507
-OTU_7542
-OTU_13718
-OTU_4593
-OTU_2343
-OTU_8708
-OTU_2677
-OTU_9665
-OTU_81
-OTU_6422
-OTU_1612
-OTU_3216
-OTU_9248
-OTU_5187
-OTU_7882
-OTU_1543
-OTU_11775
-OTU_233
-OTU_4015
-OTU_8260
-OTU_9548
-OTU_5643
-OTU_1586
-OTU_3782
-OTU_2934
-OTU_14570
-OTU_11781
-OTU_3700
-OTU_6318
-OTU_2148
-OTU_2244
-OTU_7867
-OTU_14248
-OTU_12704
-OTU_364
-OTU_8245
-OTU_10847
-OTU_1151
-OTU_1998
-OTU_10321
-OTU_4721
-OTU_6237
-OTU_1972
-OTU_11364
-OTU_1816
-OTU_14842
-OTU_6533
-OTU_8887
-OTU_12690
-OTU_3097
-OTU_3257
-OTU_3161
-OTU_11903
-OTU_7508
-OTU_10969
-OTU_1801
-OTU_3488
-OTU_933
-OTU_3824
-OTU_777
-OTU_3169
-OTU_12385
-OTU_1496
-OTU_11294
-OTU_1968
-OTU_8832
-OTU_8652
-OTU_13621
-OTU_3043
-OTU_10760
-OTU_14173
-OTU_10746
-OTU_284
-OTU_5049
-OTU_2397
-OTU_2913
-OTU_9512
+k__Bacteria	Kingdom
+p__Firmicutes	Phylum
+p__Bacteroidetes	Phylum
+p__Proteobacteria	Phylum
+p__Actinobacteria	Phylum
+p__Hydrogenedentes	Phylum
+p__Parcubacteria	Phylum
+p__Planctomycetes	Phylum
+p__Acidobacteria	Phylum
+p__Chloroflexi	Phylum
+	Phylum
+p__Saccharibacteria	Phylum
+p__Candidate division SR1	Phylum
+p__Cyanobacteria	Phylum
+p__Synergistetes	Phylum
+p__Deinococcus-Thermus	Phylum
+p__Chlorobi	Phylum
+p__Verrucomicrobia	Phylum
+p__GOUTA4	Phylum
+p__Nitrospirae	Phylum
+p__WCHB1-60	Phylum
+p__Elusimicrobia	Phylum
+p__SM2F11	Phylum
+p__TM6	Phylum
+p__Armatimonadetes	Phylum
+p__Fusobacteria	Phylum
+p__Tenericutes	Phylum
+p__Lentisphaerae	Phylum
+p__Microgenomates	Phylum
+c__Clostridia	Class
+c__Cytophagia	Class
+c__Betaproteobacteria	Class
+c__Actinobacteria	Class
+c__Gammaproteobacteria	Class
+c__Deltaproteobacteria	Class
+c__Bacilli	Class
+c__	Class
+c__Sphingobacteriia	Class
+c__Planctomycetacia	Class
+c__Holophagae	Class
+c__Chloroflexia	Class
+c__Caldilineae	Class
+	Class
+c__Anaerolineae	Class
+c__Flavobacteriia	Class
+c__Negativicutes	Class
+c__Alphaproteobacteria	Class
+c__Unknown Class	Class
+c__Cyanobacteria	Class
+c__Synergistia	Class
+c__Thermoleophilia	Class
+c__Acidimicrobiia	Class
+c__Bacteroidia	Class
+c__Phycisphaerae	Class
+c__WCHB1-50	Class
+c__Deinococci	Class
+c__Ignavibacteria	Class
+c__Verrucomicrobiae	Class
+c__Coriobacteriia	Class
+c__TA18	Class
+c__Acidobacteria	Class
+c__Nitrospira	Class
+c__Chlorobia	Class
+c__Elusimicrobia	Class
+c__Erysipelotrichia	Class
+c__BSV13	Class
+c__Thermomicrobia	Class
+c__OPB35 soil group	Class
+c__Fusobacteriia	Class
+c__Mollicutes	Class
+c__PBS-III-20	Class
+c__Chloroplast	Class
+o__Clostridiales	Order
+o__Cytophagales	Order
+o__Nitrosomonadales	Order
+o__Micrococcales	Order
+o__Xanthomonadales	Order
+o__Desulfobacterales	Order
+o__Bacillales	Order
+o__	Order
+o__Sphingobacteriales	Order
+o__Planctomycetales	Order
+o__Holophagales	Order
+o__Propionibacteriales	Order
+o__Chloroflexales	Order
+o__PeM15	Order
+o__Caldilineales	Order
+o__Rhodocyclales	Order
+	Order
+o__Myxococcales	Order
+o__Lactobacillales	Order
+o__Anaerolineales	Order
+o__Flavobacteriales	Order
+o__Selenomonadales	Order
+o__Rhodospirillales	Order
+o__Unknown Order	Order
+o__SubsectionIII	Order
+o__Burkholderiales	Order
+o__Rickettsiales	Order
+o__Rhizobiales	Order
+o__Synergistales	Order
+o__Gaiellales	Order
+o__Acidimicrobiales	Order
+o__Bacteroidales	Order
+o__Phycisphaerales	Order
+o__WCHB1-50	Order
+o__Thermales	Order
+o__Ignavibacteriales	Order
+o__Bdellovibrionales	Order
+o__Verrucomicrobiales	Order
+o__Coriobacteriales	Order
+o__Subgroup 6	Order
+o__Nitrospirales	Order
+o__WD2101 soil group	Order
+o__Actinomycetales	Order
+o__Chlorobiales	Order
+o__Subgroup 10	Order
+o__Lineage IIb	Order
+o__Oligoflexales	Order
+o__Solirubrobacterales	Order
+o__Erysipelotrichales	Order
+o__Corynebacteriales	Order
+o__JG30-KF-CM45	Order
+o__FW73	Order
+o__Fusobacteriales	Order
+o__Mollicutes RF9	Order
+o__Neisseriales	Order
+o__GR-WP33-30	Order
+f__Lachnospiraceae	Family
+f__Ruminococcaceae	Family
+f__Cytophagaceae	Family
+f__Nitrosomonadaceae	Family
+f__Intrasporangiaceae	Family
+f__Xanthomonadaceae	Family
+f__Desulfobacteraceae	Family
+f__Planococcaceae	Family
+f__	Family
+f__Dermatophilaceae	Family
+f__AKYH767	Family
+f__Planctomycetaceae	Family
+f__Holophagaceae	Family
+f__Propionibacteriaceae	Family
+f__Roseiflexaceae	Family
+f__PeM15	Family
+f__Caldilineaceae	Family
+f__Rhodocyclaceae	Family
+	Family
+f__Blfdi19	Family
+f__Lactobacillaceae	Family
+f__Anaerolineaceae	Family
+f__Flavobacteriaceae	Family
+f__Veillonellaceae	Family
+f__Acetobacteraceae	Family
+f__mle1-27	Family
+f__SBR2060	Family
+f__FamilyI	Family
+f__Microbacteriaceae	Family
+f__Saprospiraceae	Family
+f__Comamonadaceae	Family
+f__TK34	Family
+f__Bradyrhizobiaceae	Family
+f__Synergistaceae	Family
+f__Desulfobulbaceae	Family
+f__BVA77	Family
+f__env.OPS 17	Family
+f__Nocardioidaceae	Family
+f__DUNssu044	Family
+f__Prevotellaceae	Family
+f__Family XII	Family
+f__Phycisphaeraceae	Family
+f__Chitinophagaceae	Family
+f__WCHB1-50	Family
+f__Hyphomicrobiaceae	Family
+f__Thermaceae	Family
+f__Carnobacteriaceae	Family
+f__PHOS-HE36	Family
+f__Family XIII	Family
+f__Sandaracinaceae	Family
+f__Bdellovibrionaceae	Family
+f__Mitochondria	Family
+f__Verrucomicrobiaceae	Family
+f__Coriobacteriaceae	Family
+f__Nordellaceae	Family
+f__Clostridiaceae 1	Family
+f__Peptostreptococcaceae	Family
+f__Holosporaceae	Family
+f__Nitrospiraceae	Family
+f__Porphyromonadaceae	Family
+f__Actinomycetaceae	Family
+f__Family XI	Family
+f__Chlorobiaceae	Family
+f__NS9 marine group	Family
+f__Rhodospirillales Incertae Sedis	Family
+f__ABS-19	Family
+f__Haliangiaceae	Family
+f__Bacillaceae	Family
+f__480-2	Family
+f__Erysipelotrichaceae	Family
+f__Acidimicrobiaceae	Family
+f__Bacteroidaceae	Family
+f__Nocardiaceae	Family
+f__bacteriap25	Family
+f__Christensenellaceae	Family
+f__Rhodospirillaceae	Family
+f__Beutenbergiaceae	Family
+f__Leptotrichiaceae	Family
+f__Oligoflexaceae	Family
+f__Neisseriaceae	Family
+f__AKIW1012	Family
+f__Microthricaceae	Family
+f__OPB56	Family
+g__Acetitomaculum	Genus
+g__Ruminococcaceae UCG-005	Genus
+g__Dyadobacter	Genus
+g__Nitrosomonas	Genus
+g__Tetrasphaera	Genus
+	Genus
+g__Desulforegula	Genus
+g__Rummeliibacillus	Genus
+g__	Genus
+g__Fusicatenibacter	Genus
+g__Ruminiclostridium 1	Genus
+g__uncultured	Genus
+g__Brooklawnia	Genus
+g__Sulfuritalea	Genus
+g__Lactobacillus	Genus
+g__Flavobacterium	Genus
+g__Acidicaldus	Genus
+g__Candidatus Defluviifilum	Genus
+g__Ruminococcaceae UCG-010	Genus
+g__SBR2113	Genus
+g__Subdoligranulum	Genus
+g__Ramlibacter	Genus
+g__Bosea	Genus
+g__Desulfobulbus	Genus
+g__Nocardioides	Genus
+g__Fusibacter	Genus
+g__SM1F10	Genus
+g__Hyphomicrobium	Genus
+g__Meiothermus	Genus
+g__Trichococcus	Genus
+g__oca15	Genus
+g__Simplicispira	Genus
+g__Sandaracinus	Genus
+g__OM27 clade	Genus
+g__Collinsella	Genus
+g__MNG7	Genus
+g__Roseomonas	Genus
+g__Pirellula	Genus
+g__Clostridium sensu stricto 1	Genus
+g__Acetoanaerobium	Genus
+g__Nitrospira	Genus
+g__Propioniciclava	Genus
+g__Parabacteroides	Genus
+g__Actinomyces	Genus
+g__Aeromicrobium	Genus
+g__Clostridium sensu stricto 6	Genus
+g__Reyranella	Genus
+g__Proteiniclasticum	Genus
+g__B1-K1A-105	Genus
+g__Prevotellaceae UCG-004	Genus
+g__Haliangium	Genus
+g__Ureibacillus	Genus
+g__Ruminococcus 2	Genus
+g__CYCU-0281	Genus
+g__Parafilimonas	Genus
+g__Aestuariimicrobium	Genus
+g__Diaminobutyricimonas	Genus
+g__K2-78	Genus
+g__Erysipelatoclostridium	Genus
+g__CL500-29 marine group	Genus
+g__Bacteroides	Genus
+g__Tessaracoccus	Genus
+g__Gordonia	Genus
+g__Senegalimassilia	Genus
+g__Atopobium	Genus
+g__Proteiniphilum	Genus
+g__Uliginosibacterium	Genus
+g__WCHB1-50	Genus
+g__Christensenellaceae R-7 group	Genus
+g__Fodinibacter	Genus
+g__Defluviicoccus	Genus
+g__Acidovorax	Genus
+g__Salana	Genus
+g__Propionimicrobium	Genus
+g__Litorilinea	Genus
+g__Faecalitalea	Genus
+g__Ruminiclostridium 5	Genus
+g__Rivicola	Genus
+g__[Eubacterium] coprostanoligenes group	Genus
+g__Lewinella	Genus
+s__	Species
+	Species
+s__sublineage I	Species
+s__cluster I	Species
+OTU_8735	OTU
+OTU_13382	OTU
+OTU_5516	OTU
+OTU_8315	OTU
+OTU_10522	OTU
+OTU_11040	OTU
+OTU_7263	OTU
+OTU_13379	OTU
+OTU_1418	OTU
+OTU_556	OTU
+OTU_6869	OTU
+OTU_10171	OTU
+OTU_2830	OTU
+OTU_4232	OTU
+OTU_12831	OTU
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