Mercurial > repos > iuc > amrfinderplus
comparison test-data/test_3/amrfinderplus_results.tsv @ 0:a968af0a91f9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/amrfinderplus commit 73f592a7f1c1e9577bbf56a1347bd5c01bb8ea14
| author | iuc |
|---|---|
| date | Fri, 26 May 2023 09:19:12 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:a968af0a91f9 |
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| 1 Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description | |
| 2 NA contig_26 6581 8545 + optrA ABC-F type ribosomal protection protein OptrA core AMR AMR PHENICOL/OXAZOLIDINONE FLORFENICOL/OXAZOLIDINONE EXACTX 655 655 100.00 100.00 655 WP_063854496.1 ABC-F type ribosomal protection protein OptrA NA NA | |
| 3 NA contig_46 2438 3229 - aph(3')-IIIa aminoglycoside O-phosphotransferase APH(3')-IIIa core AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN BLASTX 264 264 100.00 99.62 264 WP_063841495.1 aminoglycoside O-phosphotransferase APH(3')-IIIa NA NA | |
| 4 NA contig_46 2438 3229 - aph(3')-IIIa aminoglycoside O-phosphotransferase APH(3')-IIIa core AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN BLASTX 264 264 100.00 99.62 264 WP_063841507.1 aminoglycoside O-phosphotransferase APH(3')-IIIa NA NA | |
| 5 NA contig_46 3325 3864 - sat4 streptothricin N-acetyltransferase Sat4 core AMR AMR STREPTOTHRICIN STREPTOTHRICIN BLASTX 180 180 100.00 99.44 180 WP_063854934.1 streptothricin N-acetyltransferase Sat4 NA NA | |
| 6 NA contig_47 3996 5912 - tet(M) tetracycline resistance ribosomal protection protein Tet(M) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 639 639 100.00 99.84 639 WP_063856395.1 tetracycline resistance ribosomal protection protein Tet(M) NA NA | |
| 7 NA contig_48 202 936 - erm(B) 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) core AMR AMR MACROLIDE MACROLIDE BLASTX 245 245 100.00 99.59 245 WP_063844601.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) NA NA | |
| 8 NA contig_48 4344 4988 + catA type A-7 chloramphenicol O-acetyltransferase core AMR AMR PHENICOL CHLORAMPHENICOL BLASTX 215 215 100.00 96.28 215 WP_063843211.1 type A-7 chloramphenicol O-acetyltransferase NA NA | |
| 9 NA contig_50 282 1655 + tet(L) tetracycline efflux MFS transporter Tet(L) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 458 458 100.00 99.78 458 WP_063856080.1 tetracycline efflux MFS transporter Tet(L) NA NA |