Mercurial > repos > iuc > amrfinderplus
view test-data/e_faecalis_rast.gff @ 4:30f4bafbeb9b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/amrfinderplus commit 0f83e13c1a0732970520d63537273b8a3d890dad
| author | iuc |
|---|---|
| date | Tue, 03 Oct 2023 08:31:07 +0000 |
| parents | a37bb163d05d |
| children |
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##gff-version 3 contig00015 rast2_export CDS 255 1283 . + 0 ID=fig|6666666.1033322.peg.2097;Name=Foldase protein PrsA precursor (EC 5.2.1.8) @ Foldase clustered with pyrimidine conversion;Ontology_term=KEGG_ENZYME:5.2.1.8 contig00015 rast2_export CDS 1323 2267 . - 0 ID=fig|6666666.1033322.peg.2098;Name=3'->5' exoribonuclease Bsu YhaM contig00015 rast2_export CDS 2264 4975 . - 2 ID=fig|6666666.1033322.peg.2099;Name=Plasmid replication DNA element cmp binding-factor 1 contig00015 rast2_export CDS 4972 6207 . - 1 ID=fig|6666666.1033322.peg.2100;Name=DNA double-strand break repair protein Mre11 contig00015 rast2_export CDS 6363 6704 . - 0 ID=fig|6666666.1033322.peg.2101;Name=Hypothetical protein SAV1845 contig00015 rast2_export CDS 6767 8953 . - 2 ID=fig|6666666.1033322.peg.2102;Name=Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-);Ontology_term=KEGG_ENZYME:2.4.1.129,KEGG_ENZYME:3.4.-.- contig00015 rast2_export CDS 9296 10159 . + 2 ID=fig|6666666.1033322.peg.2103;Name=Similar to ribosomal large subunit pseudouridine synthase D%2C Bacillus subtilis YhcT type contig00015 rast2_export CDS 10283 10837 . - 2 ID=fig|6666666.1033322.peg.2104;Name=Acetyltransferase%2C GNAT family contig00015 rast2_export CDS 10861 12369 . - 1 ID=fig|6666666.1033322.peg.2105;Name=Phosphoglucosamine mutase (EC 5.4.2.10);Ontology_term=KEGG_ENZYME:5.4.2.10 contig00015 rast2_export CDS 12403 12858 . - 1 ID=fig|6666666.1033322.peg.2106;Name=Arginine pathway regulatory protein ArgR%2C repressor of arg regulon contig00015 rast2_export CDS 13000 14517 . - 1 ID=fig|6666666.1033322.peg.2107;Name=Glycine betaine ABC transport system%2C permease protein OpuAB / Glycine betaine ABC transport system%2C glycine betaine-binding protein OpuAC contig00015 rast2_export CDS 14518 15471 . - 1 ID=fig|6666666.1033322.peg.2108;Name=Glycine betaine ABC transport system%2C ATP-binding protein OpuAA (EC 3.6.3.32);Ontology_term=KEGG_ENZYME:3.6.3.32 contig00015 rast2_export CDS 15744 16727 . + 0 ID=fig|6666666.1033322.peg.2109;Name=putative membrane protein contig00015 rast2_export CDS 16910 17143 . - 2 ID=fig|6666666.1033322.peg.2110;Name=hypothetical protein contig00015 rast2_export CDS 17288 18703 . - 2 ID=fig|6666666.1033322.peg.2111;Name=Putative Xaa-His dipeptidase contig00015 rast2_export CDS 18837 19571 . - 0 ID=fig|6666666.1033322.peg.2112;Name=SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19);Ontology_term=KEGG_ENZYME:5.4.99.19 contig00015 rast2_export CDS 19680 21329 . - 0 ID=fig|6666666.1033322.peg.2113;Name=Probable cell division protein YtgP contig00015 rast2_export CDS 21533 23053 . + 2 ID=fig|6666666.1033322.peg.2114;Name=UDP-N-acetylmuramoy-dipeptide--L-lysine ligase (EC 6.3.2.7);Ontology_term=KEGG_ENZYME:6.3.2.7 contig00015 rast2_export CDS 23182 23604 . + 1 ID=fig|6666666.1033322.peg.2115;Name=Cytidine/deoxycytidylate deaminase family protein contig00015 rast2_export CDS 23746 24318 . - 1 ID=fig|6666666.1033322.peg.2116;Name=Phospholipase/carboxylesterase family protein contig00015 rast2_export CDS 24349 25323 . + 1 ID=fig|6666666.1033322.peg.2117;Name=Glyoxalase family protein contig00015 rast2_export CDS 25436 25609 . + 2 ID=fig|6666666.1033322.peg.2118;Name=hypothetical protein contig00015 rast2_export CDS 25685 26155 . - 2 ID=fig|6666666.1033322.peg.2119;Name=hypothetical protein contig00015 rast2_export CDS 26208 26936 . - 0 ID=fig|6666666.1033322.peg.2120;Name=Probable transcriptional regulatory protein YebC contig00015 rast2_export CDS 27067 27576 . - 1 ID=fig|6666666.1033322.peg.2121;Name=hypothetical protein contig00015 rast2_export CDS 27722 29530 . + 2 ID=fig|6666666.1033322.peg.2122;Name=Oligoendopeptidase F-like protein contig00015 rast2_export CDS 29555 30700 . - 2 ID=fig|6666666.1033322.peg.2123;Name=Multi antimicrobial extrusion protein (Na(+)/drug antiporter)%2C MATE family of MDR efflux pumps contig00015 rast2_export CDS 30744 30887 . - 0 ID=fig|6666666.1033322.peg.2124;Name=Multi antimicrobial extrusion protein (Na(+)/drug antiporter)%2C MATE family of MDR efflux pumps contig00015 rast2_export CDS 31062 31712 . - 0 ID=fig|6666666.1033322.peg.2125;Name=Uracil-DNA glycosylase family protein%2C clostridial type contig00015 rast2_export CDS 31799 33199 . - 2 ID=fig|6666666.1033322.peg.2126;Name=hypothetical protein contig00015 rast2_export CDS 33212 33973 . - 2 ID=fig|6666666.1033322.peg.2127;Name=Transcriptional repressor GlcR%2C DeoR family contig00015 rast2_export CDS 34102 34947 . - 1 ID=fig|6666666.1033322.peg.2128;Name=Glyoxalase family protein contig00015 rast2_export CDS 34990 35586 . - 1 ID=fig|6666666.1033322.peg.2129;Name=Nitroreductase family protein contig00015 rast2_export CDS 35757 36692 . - 0 ID=fig|6666666.1033322.peg.2130;Name=Bacillus subtilis catabolite repression transcription factor CcpB contig00015 rast2_export CDS 36697 36975 . - 1 ID=fig|6666666.1033322.peg.2131;Name=hypothetical protein contig00015 rast2_export CDS 37105 37431 . + 1 ID=fig|6666666.1033322.peg.2132;Name=hypothetical protein contig00015 rast2_export CDS 37620 38468 . + 0 ID=fig|6666666.1033322.peg.2133;Name=Putative peptidase A contig00015 rast2_export CDS 38539 39552 . - 1 ID=fig|6666666.1033322.peg.2134;Name=Lipoate-protein ligase A contig00015 rast2_export CDS 39739 40356 . - 1 ID=fig|6666666.1033322.peg.2135;Name=Nitroreductase family protein contig00015 rast2_export CDS 40486 40815 . + 1 ID=fig|6666666.1033322.peg.2136;Name=Transcriptional regulator%2C HxlR family contig00015 rast2_export CDS 40829 41788 . - 2 ID=fig|6666666.1033322.peg.2137;Name=UDP-glucose 4-epimerase (EC 5.1.3.2);Ontology_term=KEGG_ENZYME:5.1.3.2 contig00015 rast2_export CDS 41809 42777 . - 1 ID=fig|6666666.1033322.peg.2138;Name=Exfoliative toxin A contig00015 rast2_export CDS 42919 43746 . + 1 ID=fig|6666666.1033322.peg.2139;Name=Transcriptional regulator%2C LysR family contig00015 rast2_export CDS 43793 44203 . - 2 ID=fig|6666666.1033322.peg.2140;Name=hypothetical protein contig00015 rast2_export CDS 44219 44581 . - 2 ID=fig|6666666.1033322.peg.2141;Name=hypothetical protein contig00015 rast2_export CDS 44749 45702 . + 1 ID=fig|6666666.1033322.peg.2142;Name=L-lactate dehydrogenase (EC 1.1.1.27);Ontology_term=KEGG_ENZYME:1.1.1.27 contig00015 rast2_export CDS 45834 46340 . + 0 ID=fig|6666666.1033322.peg.2143;Name=Low temperature requirement C protein contig00015 rast2_export CDS 46479 46928 . + 0 ID=fig|6666666.1033322.peg.2144;Name=hypothetical protein contig00015 rast2_export CDS 46980 47897 . - 0 ID=fig|6666666.1033322.peg.2145;Name=lipoprotein precursor (putative) contig00015 rast2_export CDS 48254 49660 . - 2 ID=fig|6666666.1033322.peg.2146;Name=Predicted tyrosine transporter%2C NhaC family contig00015 rast2_export CDS 49785 51203 . - 0 ID=fig|6666666.1033322.peg.2147;Name=Amino acid permease family protein contig00015 rast2_export CDS 51406 53268 . - 1 ID=fig|6666666.1033322.peg.2148;Name=decarboxylase%2C putative contig00015 rast2_export CDS 53567 54823 . - 2 ID=fig|6666666.1033322.peg.2149;Name=Tyrosyl-tRNA synthetase (EC 6.1.1.1);Ontology_term=KEGG_ENZYME:6.1.1.1 contig00015 rast2_export CDS 55521 56966 . - 0 ID=fig|6666666.1033322.peg.2150;Name=Cardiolipin synthase%2C bacterial type ClsA contig00015 rast2_export CDS 57132 57614 . - 0 ID=fig|6666666.1033322.peg.2151;Name=Glyoxalase family protein contig00015 rast2_export CDS 57637 58476 . - 1 ID=fig|6666666.1033322.peg.2152;Name=oxidoreductase of aldo/keto reductase family%2C subgroup 1 contig00015 rast2_export CDS 59474 59596 . - 2 ID=fig|6666666.1033322.peg.2153;Name=PTS system%2C hyaluronate-oligosaccharide-specific IIA component (EC 2.7.1.69);Ontology_term=KEGG_ENZYME:2.7.1.69 contig00015 rast2_export CDS 60152 60832 . - 2 ID=fig|6666666.1033322.peg.2154;Name=Oligohyaluronate lyase (EC 4.2.2.-);Ontology_term=KEGG_ENZYME:4.2.2.- contig00015 rast2_export CDS 60866 61336 . - 2 ID=fig|6666666.1033322.peg.2155;Name=PTS system%2C hyaluronate-oligosaccharide-specific IID component contig00015 rast2_export CDS 61382 61600 . - 2 ID=fig|6666666.1033322.peg.2156;Name=PTS system%2C hyaluronate-oligosaccharide-specific IID component contig00015 rast2_export CDS 61575 61739 . - 0 ID=fig|6666666.1033322.peg.2157;Name=hypothetical protein contig00015 rast2_export CDS 61798 61968 . - 1 ID=fig|6666666.1033322.peg.2158;Name=hypothetical protein contig00015 rast2_export CDS 62172 62348 . - 0 ID=fig|6666666.1033322.peg.2159;Name=FIG00631861: hypothetical protein contig00015 rast2_export CDS 62529 62678 . + 0 ID=fig|6666666.1033322.peg.2160;Name=FIG00631921: hypothetical protein contig00015 rast2_export CDS 62955 63755 . + 0 ID=fig|6666666.1033322.peg.2161;Name=Transcriptional regulator%2C TrmB family contig00015 rast2_export CDS 63771 64649 . + 0 ID=fig|6666666.1033322.peg.2162;Name=putative membrane protein contig00015 rast2_export CDS 64662 65642 . + 0 ID=fig|6666666.1033322.peg.2163;Name=Ornithine cyclodeaminase (EC 4.3.1.12);Ontology_term=KEGG_ENZYME:4.3.1.12 contig00015 rast2_export CDS 65867 66025 . + 2 ID=fig|6666666.1033322.peg.2164;Name=FIG00630291: hypothetical protein contig00015 rast2_export CDS 66164 66382 . + 2 ID=fig|6666666.1033322.peg.2165;Name=FIG00627515: hypothetical protein contig00015 rast2_export CDS 66384 66713 . + 0 ID=fig|6666666.1033322.peg.2166;Name=hypothetical protein contig00019 rast2_export CDS 3 467 . + 0 ID=fig|6666666.1033322.peg.2342;Name=2-dehydro-3-deoxyphosphogluconate aldolase-like protein STM4447 contig00019 rast2_export CDS 706 2676 . + 1 ID=fig|6666666.1033322.peg.2343;Name=Clostridial MutS2-related protein contig00019 rast2_export CDS 2845 4260 . + 1 ID=fig|6666666.1033322.peg.2344;Name=Alkaline phosphatase (EC 3.1.3.1);Ontology_term=KEGG_ENZYME:3.1.3.1 contig00019 rast2_export CDS 4372 5343 . + 1 ID=fig|6666666.1033322.peg.2345;Name=amidinotransferase family protein contig00019 rast2_export CDS 5769 6458 . + 0 ID=fig|6666666.1033322.peg.2346;Name=hypothetical protein contig00019 rast2_export CDS 6546 7679 . + 0 ID=fig|6666666.1033322.peg.2347;Name=cell surface protein precursor contig00019 rast2_export CDS 7660 8061 . + 1 ID=fig|6666666.1033322.peg.2348;Name=Cell wall surface anchor family protein contig00019 rast2_export CDS 8108 8332 . + 2 ID=fig|6666666.1033322.peg.2349;Name=hypothetical protein contig00019 rast2_export CDS 8498 10507 . + 2 ID=fig|6666666.1033322.peg.2350;Name=Putative transcriptional antiterminator%2C BglG family / PTS system%2C IIA component contig00019 rast2_export CDS 10509 10808 . + 0 ID=fig|6666666.1033322.peg.2351;Name=PTS system%2C IIB component contig00019 rast2_export CDS 10823 12190 . + 2 ID=fig|6666666.1033322.peg.2352;Name=PTS system%2C IIC component%2C UlaA-type contig00019 rast2_export CDS 12253 13227 . - 1 ID=fig|6666666.1033322.peg.2353;Name=Putative esterase contig00019 rast2_export CDS 13439 14434 . + 2 ID=fig|6666666.1033322.peg.2354;Name=Ribose operon repressor contig00019 rast2_export CDS 14532 15443 . + 0 ID=fig|6666666.1033322.peg.2355;Name=Ribokinase (EC 2.7.1.15);Ontology_term=KEGG_ENZYME:2.7.1.15 contig00019 rast2_export CDS 15459 15854 . + 0 ID=fig|6666666.1033322.peg.2356;Name=D-ribose pyranase (EC 5.4.99.62);Ontology_term=KEGG_ENZYME:5.4.99.62 contig00019 rast2_export CDS 15875 16762 . + 2 ID=fig|6666666.1033322.peg.2357;Name=Putative ribose uptake protein RbsU%2C GRP transporter family (TC 2.A.7.5) contig00019 rast2_export CDS 16782 17666 . - 0 ID=fig|6666666.1033322.peg.2358;Name=Transcriptional regulator%2C LysR family contig00019 rast2_export CDS 17774 18355 . + 2 ID=fig|6666666.1033322.peg.2359;Name=Maltose O-acetyltransferase (EC 2.3.1.79);Ontology_term=KEGG_ENZYME:2.3.1.79 contig00019 rast2_export CDS 18355 19092 . + 1 ID=fig|6666666.1033322.peg.2360;Name=Oxidoreductase%2C short-chain dehydrogenase/reductase family contig00019 rast2_export CDS 19274 20584 . + 2 ID=fig|6666666.1033322.peg.2361;Name=Xanthine/uracil/thiamine/ascorbate permease family protein contig00019 rast2_export CDS 20702 20890 . + 2 ID=fig|6666666.1033322.peg.2362;Name=hypothetical protein contig00019 rast2_export CDS 21339 22076 . - 0 ID=fig|6666666.1033322.peg.2363;Name=hypothetical protein contig00019 rast2_export CDS 22218 23552 . + 0 ID=fig|6666666.1033322.peg.2364;Name=hypothetical protein contig00019 rast2_export CDS 24223 25437 . + 1 ID=fig|6666666.1033322.peg.2365;Name=tRNA 4-thiouridine synthase (EC 2.8.1.4);Ontology_term=KEGG_ENZYME:2.8.1.4 contig00019 rast2_export CDS 25567 26214 . + 1 ID=fig|6666666.1033322.peg.2366;Name=Redox-sensing transcriptional repressor Rex contig00019 rast2_export CDS 26278 26766 . + 1 ID=fig|6666666.1033322.peg.2367;Name=Thiol peroxidase%2C Tpx-type (EC 1.11.1.15);Ontology_term=KEGG_ENZYME:1.11.1.15 contig00019 rast2_export CDS 27158 29800 . + 2 ID=fig|6666666.1033322.peg.2368;Name=Valyl-tRNA synthetase (EC 6.1.1.9);Ontology_term=KEGG_ENZYME:6.1.1.9 contig00019 rast2_export CDS 29847 30446 . - 0 ID=fig|6666666.1033322.peg.2369;Name=Immunoreactive protein Se23.5 (Fragment) contig00019 rast2_export CDS 30439 33003 . - 1 ID=fig|6666666.1033322.peg.2370;Name=Uncharacterized membrane protein YfhO-like contig00019 rast2_export CDS 33252 34574 . + 0 ID=fig|6666666.1033322.peg.2371;Name=Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17);Ontology_term=KEGG_ENZYME:6.3.2.12,KEGG_ENZYME:6.3.2.17 contig00019 rast2_export CDS 34561 35217 . + 1 ID=fig|6666666.1033322.peg.2372;Name=Hydrolase%2C haloacid dehalogenase-like family contig00019 rast2_export CDS 35273 35971 . + 2 ID=fig|6666666.1033322.peg.2373;Name=UPF0758 family protein contig00019 rast2_export CDS 36125 36325 . + 2 ID=fig|6666666.1033322.peg.2374;Name=Cold shock protein of CSP family contig00019 rast2_export CDS 36431 38116 . - 2 ID=fig|6666666.1033322.peg.2375;Name=Ribonuclease J1 (endonuclease and 5' exonuclease) contig00019 rast2_export CDS 38118 38330 . - 0 ID=fig|6666666.1033322.peg.2376;Name=Protein of unknown function DUF1447 contig00019 rast2_export CDS 38635 39021 . - 1 ID=fig|6666666.1033322.peg.2377;Name=Inner membrane protein YbaN contig00019 rast2_export CDS 39250 40977 . + 1 ID=fig|6666666.1033322.peg.2378;Name=Heterodimeric efflux ABC transporter%2C permease/ATP-binding subunit 1 contig00019 rast2_export CDS 40974 42743 . + 0 ID=fig|6666666.1033322.peg.2379;Name=Heterodimeric efflux ABC transporter%2C permease/ATP-binding subunit 2 contig00019 rast2_export CDS 42986 43477 . + 2 ID=fig|6666666.1033322.peg.2380;Name=Carbonic anhydrase-like protein MJ0304 contig00019 rast2_export CDS 43494 44642 . + 0 ID=fig|6666666.1033322.peg.2381;Name=UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14);Ontology_term=KEGG_ENZYME:5.1.3.14 contig00019 rast2_export CDS 44669 45394 . + 2 ID=fig|6666666.1033322.peg.2382;Name=Phosphoglycolate phosphatase (EC 3.1.3.18);Ontology_term=KEGG_ENZYME:3.1.3.18 contig00019 rast2_export CDS 45602 46987 . + 2 ID=fig|6666666.1033322.peg.2383;Name=Murein endolytic transglycosylase MltG contig00019 rast2_export CDS 47130 47249 . - 0 ID=fig|6666666.1033322.peg.2384;Name=FIG00629246: hypothetical protein contig00019 rast2_export CDS 47248 47727 . + 1 ID=fig|6666666.1033322.peg.2385;Name=Transcription elongation factor GreA contig00019 rast2_export CDS 47878 48609 . + 1 ID=fig|6666666.1033322.peg.2386;Name=Membrane protein LiaF(VraT)%2C specific inhibitor of LiaRS(VraRS) signaling pathway contig00019 rast2_export CDS 48606 49709 . + 0 ID=fig|6666666.1033322.peg.2387;Name=Cell envelope stress response system LiaFSR%2C sensor histidine kinase LiaS(VraS) contig00019 rast2_export CDS 49684 50316 . + 1 ID=fig|6666666.1033322.peg.2388;Name=Cell envelope stress response system LiaFSR%2C response regulator LiaR(VraR) contig00019 rast2_export CDS 50420 51085 . + 2 ID=fig|6666666.1033322.peg.2389;Name=KtrCD potassium uptake system%2C peripheral membrane component KtrC contig00019 rast2_export CDS 51158 51469 . + 2 ID=fig|6666666.1033322.peg.2390;Name=hypothetical protein contig00019 rast2_export CDS 51673 52611 . + 1 ID=fig|6666666.1033322.peg.2391;Name=Bactoprenol glucosyl transferase (EC 2.4.1.-)%3B Glycosyltransferase%2C group 2 family protein;Ontology_term=KEGG_ENZYME:2.4.1.- contig00052 rast2_export rRNA 93 1642 . + . ID=fig|6666666.1033322.rna.58;Name=LSU rRNA contig00053 rast2_export rRNA 1 1364 . + . ID=fig|6666666.1033322.rna.59;Name=LSU rRNA contig00053 rast2_export rRNA 1459 1578 . + . ID=fig|6666666.1033322.rna.60;Name=5S rRNA