Mercurial > repos > iuc > amrfinderplus
view test-data/toto.txt @ 4:30f4bafbeb9b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/amrfinderplus commit 0f83e13c1a0732970520d63537273b8a3d890dad
| author | iuc |
|---|---|
| date | Tue, 03 Oct 2023 08:31:07 +0000 |
| parents | a37bb163d05d |
| children |
line wrap: on
line source
Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_H215H cardiolipin synthase Cls [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_NFQ77NFQ cardiolipin synthase Cls [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_R218R cardiolipin synthase Cls [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_R267R cardiolipin synthase Cls [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA fig|6666666.1033322.peg.2150 contig00015 55521 56966 - cls_T261A cardiolipin synthase Cls [UNKNOWN] core AMR POINT NA NA POINTP 481 481 100.00 99.79 481 WP_002413481.1 cardiolipin synthase Cls NA NA fig|6666666.1033322.peg.2386 contig00019 47878 48609 + liaF_R177R three-component signaling pathway regulator LiaF [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 243 243 100.00 100.00 243 WP_002381168.1 three-component signaling pathway regulator LiaF NA NA fig|6666666.1033322.peg.2386 contig00019 47878 48609 + liaF_T194T three-component signaling pathway regulator LiaF [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 243 243 100.00 100.00 243 WP_002381168.1 three-component signaling pathway regulator LiaF NA NA fig|6666666.1033322.peg.2387 contig00019 48606 49709 + liaS_A180A sensor histidine kinase LiaS [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 367 367 100.00 100.00 367 WP_002365182.1 sensor histidine kinase LiaS NA NA fig|6666666.1033322.peg.2388 contig00019 49684 50316 + liaR_D191D response regulator transcription factor LiaR [WILDTYPE] core AMR POINT LIPOPEPTIDE DAPTOMYCIN POINTP 210 210 100.00 100.00 210 WP_002355137.1 response regulator transcription factor LiaR NA NA NA contig00052 108 1642 + 23S_GA375AG Enterococcus faecalis 23S ribosomal RNA [UNKNOWN] core AMR POINT NA NA POINTN 1535 2896 53.00 99.87 1535 NZ_CP041738.1:216195-219090 23S ribosomal RNA NA NA NA contig00053 1 1360 + 23S_G2505G Enterococcus faecalis 23S ribosomal RNA [WILDTYPE] core AMR POINT OXAZOLIDINONE LINEZOLID POINTN 1360 2896 46.96 99.93 1360 NZ_CP041738.1:216195-219090 23S ribosomal RNA NA NA NA contig00053 1 1360 + 23S_G2576G Enterococcus faecalis 23S ribosomal RNA [WILDTYPE] core AMR POINT OXAZOLIDINONE LINEZOLID POINTN 1360 2896 46.96 99.93 1360 NZ_CP041738.1:216195-219090 23S ribosomal RNA NA NA NA contig00053 1 1360 + 23S_T2825C Enterococcus faecalis 23S ribosomal RNA [UNKNOWN] core AMR POINT NA NA POINTN 1360 2896 46.96 99.93 1360 NZ_CP041738.1:216195-219090 23S ribosomal RNA NA NA