view test-data/test_1/amrfinderplus_results.tsv @ 7:7844dbe4f8e2 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/amrfinderplus commit 991998a3bb25e0059a8441975c652c7a75063709

Protein identifier	Contig id	Start	Stop	Strand	Gene symbol	Sequence name	Scope	Element type	Element subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference sequence	% Identity to reference sequence	Alignment length	Accession of closest sequence	Name of closest sequence	HMM id	HMM description
NA	contig_26	6581	8545	+	optrA	ABC-F type ribosomal protection protein OptrA	core	AMR	AMR	PHENICOL/OXAZOLIDINONE	FLORFENICOL/OXAZOLIDINONE	EXACTX	655	655	100.00	100.00	655	WP_063854496.1	ABC-F type ribosomal protection protein OptrA	NA	NA
NA	contig_46	2438	3229	-	aph(3')-IIIa	aminoglycoside O-phosphotransferase APH(3')-IIIa	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/KANAMYCIN	BLASTX	264	264	100.00	99.62	264	WP_063841495.1	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	NA
NA	contig_46	3325	3864	-	sat4	streptothricin N-acetyltransferase Sat4	core	AMR	AMR	STREPTOTHRICIN	STREPTOTHRICIN	BLASTX	180	180	100.00	99.44	180	WP_063854934.1	streptothricin N-acetyltransferase Sat4	NA	NA
NA	contig_47	3996	5912	-	tet(M)	tetracycline resistance ribosomal protection protein Tet(M)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTX	639	639	100.00	99.84	639	WP_063856395.1	tetracycline resistance ribosomal protection protein Tet(M)	NA	NA
NA	contig_48	202	936	-	erm(B)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	core	AMR	AMR	MACROLIDE	MACROLIDE	BLASTX	245	245	100.00	99.59	245	WP_063844601.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	NA
NA	contig_48	4344	4988	+	catA	type A-7 chloramphenicol O-acetyltransferase	core	AMR	AMR	PHENICOL	CHLORAMPHENICOL	BLASTX	215	215	100.00	96.28	215	WP_063843211.1	type A-7 chloramphenicol O-acetyltransferase	NA	NA
NA	contig_50	282	1655	+	tet(L)	tetracycline efflux MFS transporter Tet(L)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	BLASTX	458	458	100.00	99.78	458	WP_063856080.1	tetracycline efflux MFS transporter Tet(L)	NA	NA