Mercurial > repos > iuc > amrfinderplus
view test-data/test_9/amrfinderplus_results.tsv @ 7:7844dbe4f8e2 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/amrfinderplus commit 991998a3bb25e0059a8441975c652c7a75063709
| author | iuc |
|---|---|
| date | Thu, 30 May 2024 13:07:03 +0000 |
| parents | a37bb163d05d |
| children |
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Name Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node test_5 NA contig00015 14824 15468 - tetA(46) tetracycline efflux ABC transporter Tet(46) subunit A core AMR AMR TETRACYCLINE TETRACYCLINE PARTIALX 215 574 37.63 27.48 222 WP_063856469.1 tetracycline efflux ABC transporter Tet(46) subunit A NA NA tetA(46) test_5 NA contig00019 27227 29524 + mupB mupirocin-resistant isoleucine--tRNA ligase MupB core AMR AMR MUPIROCIN MUPIROCIN PARTIALX 766 1033 81.12 24.62 853 WP_063854488.1 mupirocin-resistant isoleucine--tRNA ligase MupB NA NA mupB test_5 NA contig00019 39250 40965 + tetA(46) tetracycline efflux ABC transporter Tet(46) subunit A core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 572 574 99.48 25.08 594 WP_063856469.1 tetracycline efflux ABC transporter Tet(46) subunit A NA NA tetA(46) test_5 NA contig00019 41181 42731 + tetA(46) tetracycline efflux ABC transporter Tet(46) subunit A core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 517 574 90.59 27.59 522 WP_063856469.1 tetracycline efflux ABC transporter Tet(46) subunit A NA NA tetA(46)