view test-data/test_7/amrfinderplus_results.tsv @ 0:a968af0a91f9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/amrfinderplus commit 73f592a7f1c1e9577bbf56a1347bd5c01bb8ea14

Protein identifier	Contig id	Start	Stop	Strand	Gene symbol	Sequence name	Scope	Element type	Element subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference sequence	% Identity to reference sequence	Alignment length	Accession of closest sequence	Name of closest sequence	HMM id	HMM description
blaTEM-156	contig01	101	961	+	blaTEM-156	class A beta-lactamase TEM-156	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	286	286	100.00	100.00	286	WP_061158039.1	class A beta-lactamase TEM-156	NA	NA
blaPDC-114_blast	contig02	1	1191	+	blaPDC	PDC family class C beta-lactamase	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	BLASTP	397	397	100.00	99.75	397	WP_061189306.1	class C beta-lactamase PDC-114	NA	NA
blaOXA-436_partial	contig03	101	802	+	blaOXA	OXA-48 family class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	233	265	87.92	93.56	233	WP_063864110.1	OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-484	NA	NA
vanG	contig04	101	1147	+	vanG	D-alanine--D-serine ligase VanG	core	AMR	AMR	GLYCOPEPTIDE	VANCOMYCIN	EXACTP	349	349	100.00	100.00	349	WP_063856695.1	D-alanine--D-serine ligase VanG	NA	NA
sul2_partial_3p_neg	contig09	715	1377	-	sul2	sulfonamide-resistant dihydropteroate synthase Sul2	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	PARTIALP	221	271	81.55	99.10	221	WP_063855540.1	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA
blaTEM-internal_stop	contig11	113	547	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	144	286	50.35	97.22	144	WP_061158039.1	class A beta-lactamase TEM-156	NA	NA