comparison loompy_to_tsv.py @ 10:0cb889db0910 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 7decaee045e15bd71deb3bc46b81aa39caf1ed31

9:707023fa62fe

allcols = []
colstrings = []
allrows = []

# Build background info for all attributes and layers
loompyfile = loompy.connect(file)
row_attributes = loompyfile.ra.keys()  # List of row attributes
for row in row_attributes:  # Each list represents rownames for row_attributes
    c_row = loompyfile.ra[row]
    c_row = [str(r) for r in c_row]
    allrows.append(c_row)

10:0cb889db0910

allcols = []
colstrings = []
allrows = []

# Build background info for all attributes and layers
loompyfile = loompy.connect(file, mode="r")
row_attributes = loompyfile.ra.keys()  # List of row attributes
for row in row_attributes:  # Each list represents rownames for row_attributes
    c_row = loompyfile.ra[row]
    c_row = [str(r) for r in c_row]
    allrows.append(c_row)