Mercurial > repos > iuc > anndata_export

comparison export.xml @ 11:e1c3c2f2a834 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 656ce7ff596a8870b77848469e85b406c7bd9344
author iuc
date Sun, 12 Nov 2023 16:43:28 +0000
parents 0cb889db0910
children cfaf5a405371
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10:0cb889db0910 11:e1c3c2f2a834
14 ]]></command> 14 ]]></command>
15 <configfiles> 15 <configfiles>
16 <configfile name="script_file"><![CDATA[ 16 <configfile name="script_file"><![CDATA[
17 @CMD_imports@ 17 @CMD_imports@
18 #if $hd5_format.filetype == 'anndata': 18 #if $hd5_format.filetype == 'anndata':
19 adata = ad.read('$hd5_format.input') 19 adata = ad.read_h5ad('$hd5_format.input')
20 #if $hd5_format.output_format == 'loom': 20 #if $hd5_format.output_format == 'loom':
21 adata.write_loom('anndata.loom') 21 adata.write_loom('anndata.loom')
22 #else if $hd5_format.output_format == 'tabular': 22 #else if $hd5_format.output_format == 'tabular':
23 adata.write_csvs('.', sep="\t", skip_data = False) 23 adata.write_csvs('.', sep="\t", skip_data = False)
24 #end if 24 #end if