comparison import.xml @ 14:6f143dfe902a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit c1d84c1850c53deccc384de3960d2cec37bb2869

13:d330b3082107

            </param>
            <param name="make_unique" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Make the variable index unique by appending '-1', '-2'?"/>
            <param name="gex_only" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Keep only 'Gene Expression' data and ignore other feature types?"/>
        </xml>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="1.10.2">scanpy</requirement>
    </expand>
    <expand macro="version_command"/>
    <command detect_errors="exit_code"><![CDATA[

**What it does**

This tool creates an AnnData from several input types:

- Loom (`read_loom method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_loom.html>`__)
- Tabular (`read_csv method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_csv.html>`__)
- Matrix Market (mtx), from Cell ranger or not (`read_mtx method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_mtx.html>`__)
- UMI tools (`read_umi_tools method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_umi_tools.html>`__)

@HELP@
    ]]></help>
    <expand macro="citations"/>
</tool>

14:6f143dfe902a

            </param>
            <param name="make_unique" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Make the variable index unique by appending '-1', '-2'?"/>
            <param name="gex_only" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Keep only 'Gene Expression' data and ignore other feature types?"/>
        </xml>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements">
        <requirement type="package" version="1.10.2">scanpy</requirement>
    </expand>
    <expand macro="version_command"/>
    <command detect_errors="exit_code"><![CDATA[

**What it does**

This tool creates an AnnData from several input types:

- Loom (`read_loom method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_loom.html>`__)
- Tabular (`read_csv method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_csv.html>`__)
- Matrix Market (mtx), from Cell ranger or not (`read_mtx method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_mtx.html>`__)
- UMI tools (`read_umi_tools method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_umi_tools.html>`__)

@HELP@
    ]]></help>
    <expand macro="citations"/>
</tool>