comparison macros.xml @ 13:d330b3082107 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 67b3808b56df343798263ff0c905df8cb789edfa

12:93dd15e13e6a

<macros>
    <token name="@TOOL_VERSION@">0.10.3</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">anndata</requirement>
            <requirement type="package" version="3.0.6">loompy</requirement>
            <yield />

        <version_command><![CDATA[python -c "import anndata as ad;print('anndata version: %s' % ad.__version__); import loompy;print('\nloompy version: %s' % loompy.__version__)"]]></version_command>
    </xml>
    <token name="@CMD@"><![CDATA[
cat '$script_file' &&
python '$script_file'
    ]]>
    </token>
    <token name="@LOOMCMD@"><![CDATA[
mkdir ./output &&
mkdir ./attributes &&
python '$__tool_directory__/loompy_to_tsv.py' -f '${hd5_format.input}'
    ]]>
    </token>
    <token name="@CMD_imports@"><![CDATA[
import anndata as ad
    ]]>

            <when value="specified">
                <param name="list" type="text" value="" label="List of comma-separated indices to return"/>
            </when>
        </conditional>
    </xml>
</macros>

13:d330b3082107

<macros>
    <token name="@TOOL_VERSION@">0.10.9</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">21.09</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">anndata</requirement>
            <requirement type="package" version="3.0.6">loompy</requirement>
            <yield />

        <version_command><![CDATA[python -c "import anndata as ad;print('anndata version: %s' % ad.__version__); import loompy;print('\nloompy version: %s' % loompy.__version__)"]]></version_command>
    </xml>
    <token name="@CMD@"><![CDATA[
cat '$script_file' &&
python '$script_file'
    ]]>
    </token>
    <token name="@CMD_imports@"><![CDATA[
import anndata as ad
    ]]>

            <when value="specified">
                <param name="list" type="text" value="" label="List of comma-separated indices to return"/>
            </when>
        </conditional>
    </xml>
    <xml name="sanitize_query" token_validinitial="string.printable">
        <sanitizer>
            <valid initial="@VALIDINITIAL@">
                <remove value="&apos;" />
            </valid>
       </sanitizer>
    </xml>
</macros>