# HG changeset patch # User iuc # Date 1699807377 0 # Node ID 93dd15e13e6a6bf67e9d904c9e5fe9f079c315af # Parent fb9e030ffae4ba4757fe1fbc571cfc794bde9d7d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 656ce7ff596a8870b77848469e85b406c7bd9344 diff -r fb9e030ffae4 -r 93dd15e13e6a import.xml --- a/import.xml Wed Jun 22 07:21:48 2022 +0000 +++ b/import.xml Sun Nov 12 16:42:57 2023 +0000 @@ -13,7 +13,7 @@ - scanpy + scanpy - + diff -r fb9e030ffae4 -r 93dd15e13e6a macros.xml --- a/macros.xml Wed Jun 22 07:21:48 2022 +0000 +++ b/macros.xml Sun Nov 12 16:42:57 2023 +0000 @@ -1,10 +1,10 @@ - 0.7.5 - 1 + 0.10.3 + 0 anndata - loompy + loompy diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/addloomout1.loom Binary file test-data/addloomout1.loom has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/addloomout2.loom Binary file test-data/addloomout2.loom has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/addloomout3.loom Binary file test-data/addloomout3.loom has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/converted.loom.test Binary file test-data/converted.loom.test has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/export.krumsiek11.X.tabular --- a/test-data/export.krumsiek11.X.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/export.krumsiek11.X.tabular Sun Nov 12 16:42:57 2023 +0000 @@ -498,143 +498,3 @@ 0.1857 0.0587 -0.0003 0.0087 0.0084 0.0221 0.9613 0.2272 0.1058 0.0298 0.276 0.177 0.0645 0.0011 0.009 0.006 0.0222 0.9653 0.2208 0.1063 0.0291 0.2785 0.1664 0.0673 0.002 0.0078 0.0094 0.0278 0.9689 0.2125 0.1041 0.0294 0.2794 -0.159 0.0738 0.0015 0.0092 0.0068 0.0289 0.97 0.2054 0.1042 0.0299 0.2807 -0.1509 0.0722 0.002 0.0078 0.0038 0.0353 0.9718 0.2007 0.0995 0.0284 0.2862 -0.1492 0.0714 0.0025 0.014 0.0066 0.0381 0.972 0.1993 0.0989 0.0286 0.2911 -0.1445 0.0706 0.0049 0.0148 0.0107 0.0411 0.9767 0.1999 0.0957 0.0306 0.293 -0.1402 0.073 0.0063 0.0143 0.0122 0.0407 0.9761 0.2024 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b/test-data/export.krumsiek11.obs.tabular Sun Nov 12 16:42:57 2023 +0000 @@ -1,4 +1,4 @@ -index cell_type + cell_type 0 progenitor 1 progenitor 2 progenitor @@ -499,143 +499,3 @@ 17 progenitor 18 progenitor 19 progenitor -20 progenitor -21 progenitor -22 progenitor -23 progenitor -24 progenitor -25 progenitor -26 progenitor -27 progenitor -28 progenitor -29 progenitor -30 progenitor -31 progenitor -32 progenitor -33 progenitor -34 progenitor -35 progenitor -36 progenitor -37 progenitor -38 progenitor -39 progenitor -40 progenitor -41 progenitor -42 progenitor -43 progenitor -44 progenitor -45 progenitor -46 progenitor -47 progenitor -48 progenitor -49 progenitor -50 progenitor -51 progenitor -52 progenitor -53 progenitor -54 progenitor -55 progenitor -56 progenitor -57 progenitor -58 progenitor -59 progenitor -60 progenitor -61 progenitor -62 progenitor -63 progenitor -64 progenitor -65 progenitor -66 progenitor -67 progenitor -68 progenitor -69 progenitor -70 progenitor -71 progenitor -72 progenitor -73 progenitor -74 progenitor -75 progenitor -76 progenitor -77 progenitor -78 progenitor -79 progenitor -80 Neu -81 Neu -82 Neu -83 Neu -84 Neu -85 Neu -86 Neu -87 Neu -88 Neu -89 Neu -90 Neu -91 Neu -92 Neu -93 Neu -94 Neu -95 Neu -96 Neu -97 Neu -98 Neu -99 Neu -100 Neu -101 Neu -102 Neu -103 Neu -104 Neu -105 Neu -106 Neu -107 Neu -108 Neu -109 Neu -110 Neu -111 Neu -112 Neu -113 Neu -114 Neu -115 Neu -116 Neu -117 Neu -118 Neu -119 Neu -120 Neu -121 Neu -122 Neu -123 Neu -124 Neu -125 Neu -126 Neu -127 Neu -128 Neu -129 Neu -130 Neu -131 Neu -132 Neu -133 Neu -134 Neu -135 Neu -136 Neu -137 Neu -138 Neu -139 Neu -140 Neu -141 Neu -142 Neu -143 Neu -144 Neu -145 Neu -146 Neu -147 Neu -148 Neu -149 Neu -150 Neu -151 Neu -152 Neu -153 Neu -154 Neu -155 Neu -156 Neu -157 Neu -158 Neu -159 Neu diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/export.krumsiek11.obsm.tabular --- a/test-data/export.krumsiek11.obsm.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/export.krumsiek11.obsm.tabular Sun Nov 12 16:42:57 2023 +0000 @@ -499,143 +499,3 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/export.krumsiek11.var.tabular --- a/test-data/export.krumsiek11.var.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/export.krumsiek11.var.tabular Sun Nov 12 16:42:57 2023 +0000 @@ -1,4 +1,4 @@ -index +"" Gata2 Gata1 Fog1 diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/import.csv.h5ad Binary file test-data/import.csv.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/import.loom.krumsiek11.h5ad Binary file test-data/import.loom.krumsiek11.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/import.mtx.legacy_10x.h5ad Binary file test-data/import.mtx.legacy_10x.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/import.mtx.no_10x.h5ad Binary file test-data/import.mtx.no_10x.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/import.mtx.v3_10x.h5ad Binary file test-data/import.mtx.v3_10x.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/import.tsv.h5ad Binary file test-data/import.tsv.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/import.umi_tools.h5ad Binary file test-data/import.umi_tools.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/inspect.X.tabular --- a/test-data/inspect.X.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/inspect.X.tabular Sun Nov 12 16:42:57 2023 +0000 @@ -1,4 +1,4 @@ -index Gata2 Gata1 Fog1 EKLF Fli1 SCL Cebpa Pu.1 cJun EgrNab Gfi1 + Gata2 Gata1 Fog1 EKLF Fli1 SCL Cebpa Pu.1 cJun EgrNab Gfi1 0 0.8032 -0.0005 -1e-04 0.0003 0.0013 0.0011 0.7997 0.8017 0.0006 0.0009 0.0002 1 0.7239 0.0016 -0.0003 -0.001 0.0011 0.0022 0.8195 0.7256 0.0784 0.0077 0.0941 2 0.6578 0.0013 -0.001 -0.0027 0.0025 0.0011 0.8358 0.6624 0.1105 0.0239 0.1497 @@ -499,143 +499,3 @@ 17 0.1857 0.0587 -0.0003 0.0087 0.0084 0.0221 0.9613 0.2272 0.1058 0.0298 0.276 18 0.177 0.0645 0.0011 0.009 0.006 0.0222 0.9653 0.2208 0.1063 0.0291 0.2785 19 0.1664 0.0673 0.002 0.0078 0.0094 0.0278 0.9689 0.2125 0.1041 0.0294 0.2794 -20 0.159 0.0738 0.0015 0.0092 0.0068 0.0289 0.97 0.2054 0.1042 0.0299 0.2807 -21 0.1509 0.0722 0.002 0.0078 0.0038 0.0353 0.9718 0.2007 0.0995 0.0284 0.2862 -22 0.1492 0.0714 0.0025 0.014 0.0066 0.0381 0.972 0.1993 0.0989 0.0286 0.2911 -23 0.1445 0.0706 0.0049 0.0148 0.0107 0.0411 0.9767 0.1999 0.0957 0.0306 0.293 -24 0.1402 0.073 0.0063 0.0143 0.0122 0.0407 0.9761 0.2024 0.0999 0.0315 0.2912 -25 0.1389 0.0725 0.0069 0.0163 0.014 0.0406 0.9781 0.206 0.0972 0.0301 0.2917 -26 0.1364 0.0761 0.0068 0.013 0.0147 0.0441 0.975 0.2033 0.0948 0.0285 0.2932 -27 0.1363 0.0786 0.0082 0.0151 0.0153 0.0463 0.9812 0.2048 0.0921 0.0291 0.2963 -28 0.1339 0.0796 0.0069 0.0145 0.0171 0.0539 0.984 0.2069 0.0884 0.031 0.2958 -29 0.1305 0.0847 0.0085 0.0156 0.015 0.0565 0.9853 0.2108 0.0883 0.0348 0.2913 -30 0.1276 0.0846 0.0087 0.0156 0.0124 0.0569 0.9906 0.2103 0.0888 0.0282 0.2906 -31 0.1238 0.0827 0.008 0.0176 0.0158 0.0603 0.9893 0.213 0.0886 0.0267 0.2899 -32 0.121 0.077 0.01 0.0174 0.0171 0.0605 0.9918 0.2194 0.0885 0.029 0.2966 -33 0.1187 0.0773 0.0107 0.0185 0.0164 0.0598 0.9913 0.2219 0.0878 0.0299 0.2996 -34 0.1158 0.0758 0.0095 0.0171 0.014 0.0573 0.9951 0.2252 0.0877 0.0324 0.3007 -35 0.1131 0.0785 0.0121 0.0212 0.0153 0.0587 0.9946 0.2275 0.0886 0.0303 0.3019 -36 0.1122 0.0777 0.0109 0.0218 0.0127 0.0596 0.9941 0.2355 0.0893 0.0283 0.3032 -37 0.1072 0.0748 0.0119 0.023 0.0139 0.0585 0.9989 0.241 0.091 0.0281 0.3086 -38 0.1028 0.0746 0.0094 0.0226 0.0179 0.06 1.0018 0.2489 0.0894 0.028 0.3093 -39 0.099 0.0747 0.0085 0.0216 0.0202 0.0572 1.0025 0.2566 0.0881 0.0277 0.3119 -40 0.0972 0.072 0.0094 0.0201 0.0221 0.0575 1.0 0.2602 0.0866 0.0225 0.3188 -41 0.091 0.0694 0.0116 0.0167 0.0212 0.059 0.9977 0.2646 0.0859 0.0206 0.335 -42 0.0881 0.0635 0.0127 0.0144 0.0243 0.0575 0.9993 0.2765 0.0842 0.0192 0.347 -43 0.0777 0.0648 0.0107 0.0142 0.0227 0.0554 1.0009 0.2916 0.0783 0.0182 0.3636 -44 0.0751 0.0614 0.0109 0.014 0.0234 0.0511 0.9961 0.3049 0.073 0.0199 0.3763 -45 0.0672 0.0573 0.0062 0.0126 0.0243 0.0472 0.9971 0.3239 0.0715 0.0206 0.387 -46 0.0605 0.0557 0.0099 0.012 0.0209 0.0449 0.999 0.3487 0.0693 0.0166 0.3983 -47 0.0558 0.0487 0.007 0.0078 0.0213 0.0421 1.0022 0.3729 0.0685 0.0143 0.4193 -48 0.0541 0.0413 0.0061 0.0081 0.0214 0.0373 1.0017 0.398 0.0627 0.015 0.4442 -49 0.0473 0.0383 0.0069 0.0082 0.0187 0.0349 1.0021 0.4264 0.0628 0.0124 0.4633 -50 0.0406 0.0333 0.0086 0.0041 0.0166 0.0321 1.0035 0.456 0.0572 0.0091 0.4903 -51 0.0375 0.0293 0.0067 0.0051 0.0111 0.0277 1.0031 0.4869 0.0538 0.0077 0.5204 -52 0.0345 0.026 0.0056 0.0032 0.0092 0.0229 1.0014 0.5207 0.0548 0.0092 0.5525 -53 0.0355 0.0241 0.0018 0.0041 0.0093 0.0204 0.9994 0.549 0.052 0.0077 0.5806 -54 0.0338 0.0206 0.0042 0.001 0.0103 0.0208 0.9973 0.5815 0.0465 0.0034 0.6118 -55 0.0295 0.0149 0.0014 0.0002 0.0086 0.0173 0.9992 0.612 0.0456 0.0037 0.6484 -56 0.0271 0.0161 -0.0009 0.0042 0.0087 0.0183 0.9966 0.6404 0.0462 0.0017 0.6776 -57 0.0234 0.0168 -0.0031 0.0043 0.0105 0.0146 0.9972 0.6661 0.0422 0.0024 0.7058 -58 0.0197 0.0159 -0.0013 0.0039 0.0117 0.0134 0.9977 0.6918 0.0429 0.0049 0.7283 -59 0.019 0.0129 -0.0024 0.0057 0.0121 0.0116 0.998 0.7171 0.0406 0.0068 0.7472 -60 0.0188 0.0127 -0.0019 0.0055 0.0136 0.0106 0.9989 0.741 0.041 0.0035 0.7613 -61 0.0136 0.0091 -0.0 0.0055 0.011 0.0114 1.0007 0.7634 0.0377 0.003 0.7768 -62 0.013 0.0047 0.0062 0.0049 0.0092 0.0106 1.004 0.7838 0.036 0.0054 0.7941 -63 0.0121 0.0046 0.0084 0.0015 0.0085 0.0119 1.0038 0.8002 0.0354 0.0076 0.8068 -64 0.0067 0.003 0.0063 0.0018 0.0057 0.0093 1.0053 0.815 0.0358 0.0093 0.8085 -65 0.0036 0.004 0.0098 0.0048 0.0029 0.0103 1.0043 0.8335 0.0347 0.0092 0.8087 -66 0.0022 0.0014 0.0081 0.0054 0.0016 0.007 1.0051 0.845 0.0368 0.0106 0.8054 -67 0.0035 0.0008 0.0072 0.0045 -0.0017 0.0118 1.0106 0.8645 0.0355 0.0123 0.797 -68 0.0019 -0.0007 0.0076 0.0025 -0.0015 0.0157 1.0082 0.8786 0.0353 0.0115 0.79 -69 -0.0005 0.0007 0.0056 0.0028 -0.0028 0.0182 1.0054 0.8891 0.0327 0.0156 0.7795 -70 1e-04 0.0043 0.004 0.0038 -0.0027 0.0153 1.0046 0.9017 0.0336 0.0166 0.7638 -71 0.001 0.0058 0.005 0.0017 0.0019 0.0136 1.0057 0.9121 0.0304 0.0145 0.7487 -72 -0.0005 0.0014 0.0029 0.0017 0.0003 0.0109 1.0029 0.9236 0.0279 0.0121 0.7384 -73 -0.0007 0.0043 -0.0017 0.001 0.0004 0.0126 1.0038 0.9318 0.0295 0.0122 0.7401 -74 0.0017 0.0049 -0.0038 0.002 -0.0004 0.0123 1.006 0.9391 0.031 0.0104 0.742 -75 0.002 0.0058 -0.0027 0.0012 -0.0029 0.0137 1.0065 0.944 0.0288 0.0112 0.746 -76 0.0056 0.006 -0.0008 -0.0 -0.0048 0.0128 1.0063 0.9488 0.0278 0.0064 0.7508 -77 0.001 0.0034 0.0003 -0.0009 -0.0041 0.0157 1.005 0.9543 0.0263 0.0042 0.767 -78 -0.0035 0.0037 -0.0005 -0.0013 -0.0014 0.0136 1.0037 0.9554 0.0244 0.003 0.7852 -79 -0.0036 0.0011 -0.0017 0.0015 -0.0033 0.0083 1.0048 0.9596 0.0232 0.0023 0.8049 -80 -0.0045 0.0013 -0.0018 0.0058 -0.0019 0.0051 1.0035 0.9609 0.0182 0.0031 0.8223 -81 -0.0054 0.0006 0.0006 0.0042 0.0025 0.0081 1.0022 0.9671 0.0173 0.0013 0.8407 -82 -0.0044 -0.0017 0.0009 0.0039 0.002 0.0053 1.0022 0.9687 0.0191 0.0033 0.854 -83 -0.0062 -0.0005 0.0028 0.0042 -1e-04 0.0053 1.0035 0.9725 0.0186 0.0011 0.8643 -84 -0.0032 -0.0016 0.0028 0.0041 -0.003 0.0062 1.0058 0.9703 0.0221 0.0036 0.8738 -85 -0.0008 -0.0045 0.0032 0.0015 -0.0052 0.0076 1.0098 0.9704 0.02 0.0038 0.8789 -86 -0.0009 -0.0052 0.0032 0.003 -0.0049 0.0053 1.0059 0.9697 0.0174 0.0017 0.8827 -87 -0.0004 -0.0044 0.001 0.0014 -0.0041 0.0082 1.0084 0.9742 0.0192 0.0018 0.8915 -88 0.0004 -0.0036 -0.0013 -0.0013 -0.0069 0.0088 1.0077 0.9741 0.0203 -0.002 0.9007 -89 0.0016 -0.0057 -0.0028 -0.0019 -0.0092 0.0088 1.0056 0.9772 0.0227 -0.0029 0.9079 -90 0.0043 -0.0044 -0.0029 -0.0042 -0.011 0.0089 1.0077 0.9774 0.0187 -0.0027 0.9122 -91 0.0029 -0.0048 -0.0007 -0.0074 -0.0067 0.0103 1.0058 0.9793 0.0164 -1e-04 0.919 -92 0.0046 -0.0024 0.0024 -0.0066 -0.0074 0.0084 1.0077 0.978 0.0156 0.0033 0.9253 -93 0.0057 0.0025 0.006 -0.0083 -0.0069 0.0096 1.0043 0.9815 0.0139 -0.0 0.9315 -94 0.0058 -0.0008 0.0053 -0.0048 -0.0079 0.0051 1.0027 0.9819 0.0128 -0.0021 0.9381 -95 0.0049 1e-04 0.0076 -0.0053 -0.0099 0.003 1.004 0.9834 0.0174 0.0006 0.9442 -96 0.0026 0.0016 0.0087 -0.0013 -0.0097 -0.0002 1.001 0.9825 0.0152 -0.0037 0.9445 -97 0.001 -0.0015 0.0051 -0.0056 -0.0109 -1e-04 0.9991 0.9858 0.0147 1e-04 0.9469 -98 0.0017 -0.0009 0.0059 -0.0041 -0.0127 0.0027 1.0012 0.9888 0.0157 0.0004 0.9482 -99 0.0033 0.0025 0.0038 -0.0023 -0.0113 0.0005 0.9991 0.9893 0.0158 -0.0009 0.9526 -100 0.0022 -0.0025 0.0025 -0.0013 -0.0115 -0.0025 1.0013 0.9851 0.0158 -0.0003 0.9539 -101 0.0027 -0.0007 0.0033 -0.0021 -0.0107 -0.0073 0.9994 0.9876 0.0167 0.004 0.9537 -102 0.001 -0.002 0.0027 -0.0006 -0.0094 -0.0082 0.9983 0.9895 0.0161 0.0061 0.9528 -103 -0.0018 0.0012 0.0018 0.001 -0.0121 -0.0074 0.9983 0.9941 0.0151 0.0051 0.9486 -104 -0.0016 -0.0011 0.0026 -0.0014 -0.0084 -0.0067 1.002 0.9956 0.0121 0.0063 0.9434 -105 -0.0007 -0.0027 -0.0022 -0.0006 -0.0084 -0.005 1.0045 1.0011 0.0128 0.0055 0.9396 -106 -0.0002 -0.003 -0.0008 -0.0023 -0.0017 -0.0051 1.0037 1.0037 0.0119 0.0047 0.9403 -107 -0.0 -0.0031 -0.0037 -0.0025 -0.0061 -0.0018 1.0033 1.0054 0.0141 0.0054 0.9383 -108 0.001 -0.006 -0.0048 -0.0004 -0.0048 -0.0024 1.0029 1.0067 0.0164 0.007 0.9398 -109 0.001 -0.005 -0.0075 -0.0036 -0.0073 0.0003 1.001 1.0062 0.0178 0.005 0.9357 -110 0.0013 -0.0048 -0.0074 -0.0052 -0.0027 -0.0005 0.9988 1.0052 0.016 0.005 0.9303 -111 0.0031 -0.0044 -0.0053 0.0004 -0.002 0.0006 0.999 1.0037 0.017 0.006 0.9304 -112 0.004 -0.0049 -0.0044 0.002 -0.0009 -0.0012 1.001 1.0015 0.0203 0.0063 0.9264 -113 0.0024 -0.0035 -0.0028 0.0016 -0.0004 -0.0013 1.0027 1.0006 0.0214 0.0027 0.9278 -114 0.0036 -0.0006 -0.0018 0.0002 -0.001 0.0011 1.0038 1.0032 0.0185 0.0014 0.9326 -115 0.0036 -0.0017 -0.0026 0.0049 -0.0051 0.0024 1.0048 1.0039 0.0179 -0.0011 0.9367 -116 0.0036 -0.0032 -0.0034 0.0032 -0.0023 0.0036 1.0062 1.0058 0.0195 -0.0015 0.9401 -117 0.0018 -0.0049 1e-04 0.001 0.0 0.0044 1.0066 1.0055 0.0204 -0.0021 0.9432 -118 -0.0 -0.0055 -0.0014 -0.0013 -0.0025 0.002 1.0021 1.0051 0.0189 -0.0044 0.9453 -119 -0.0035 -0.004 -0.0032 -0.0007 -0.0018 -0.0 1.0024 1.0047 0.0187 -0.0066 0.9389 -120 -0.0071 -0.0056 -0.0025 0.0002 -0.002 -0.004 1.0032 1.0047 0.0155 -0.0102 0.9278 -121 -0.0053 -0.0073 -0.0031 0.0033 0.0006 -0.0011 1.0012 1.0025 0.0137 -0.0045 0.9215 -122 -0.001 -0.0068 -0.0031 0.0045 -0.0015 -0.0032 0.9998 1.0044 0.0113 -0.0052 0.9236 -123 -0.0017 -0.0023 -0.0046 0.0052 0.0033 -0.0023 0.9987 1.0078 0.0105 -0.007 0.9217 -124 -0.0025 0.0006 -1e-04 0.0069 0.0048 -0.0008 0.9951 1.005 0.0144 -0.0072 0.9174 -125 -0.0014 0.0029 -0.0026 0.0083 0.003 0.0 0.9967 1.0052 0.013 -0.0051 0.9144 -126 1e-04 0.0038 -0.0015 0.0065 0.0026 0.0015 0.9945 1.0036 0.0144 -0.003 0.9207 -127 0.0019 0.002 0.0014 0.0059 0.0048 0.0008 0.9966 1.007 0.0151 -0.0008 0.9236 -128 0.0013 0.0018 -0.0016 0.0077 0.0045 -0.0 0.9966 1.0074 0.0135 -0.0022 0.9318 -129 0.0014 -0.0 -0.0017 0.006 0.0053 0.0002 0.989 1.0061 0.014 -0.0034 0.9351 -130 0.0012 0.0023 0.0008 0.0046 0.0053 0.0032 0.9867 1.0054 0.0131 -0.0067 0.938 -131 0.0045 0.0011 0.0021 0.0024 0.007 0.0006 0.9872 1.004 0.0125 -0.0076 0.9325 -132 0.0077 0.0017 0.0034 0.0055 0.0049 -0.001 0.9914 1.0053 0.0113 -0.0099 0.92 -133 0.0061 -0.0006 0.0036 0.0096 0.0063 -0.0023 0.9914 1.0067 0.0126 -0.0062 0.9187 -134 0.0046 -0.0029 0.0047 0.0083 0.0047 -0.0058 0.9915 1.0034 0.0144 -0.0047 0.9198 -135 0.0025 -0.002 0.0026 0.0064 0.0047 -0.0078 0.9926 1.003 0.0153 -0.0054 0.9198 -136 -0.0023 -0.0027 0.0013 0.0059 0.0014 -0.0077 0.9938 1.0012 0.0143 -0.0046 0.9246 -137 0.0004 -0.0045 0.0011 0.0046 0.0035 -0.0082 0.9927 1.0007 0.0133 -0.0049 0.9222 -138 -0.0006 -0.0044 0.001 0.0071 0.0049 -0.0112 0.9953 1.0034 0.0123 -0.0061 0.9246 -139 -0.0025 -0.0051 -0.0003 0.0076 0.003 -0.0067 0.9932 1.0029 0.014 -0.0055 0.9267 -140 -0.0038 -0.0068 0.0007 0.0066 -0.0003 -0.0066 0.9921 1.0051 0.013 -0.0046 0.9243 -141 -0.0023 -0.0119 0.0046 0.0063 0.0037 -0.0059 0.9913 1.004 0.0146 -0.0022 0.9326 -142 -0.0034 -0.0117 0.002 0.0028 0.003 -0.0026 0.9923 1.0021 0.0158 -0.0021 0.9364 -143 -0.0047 -0.0134 0.0031 0.0018 0.0046 -0.0006 0.9908 0.9996 0.0136 -0.0015 0.9376 -144 -0.0035 -0.0163 0.0017 0.0016 0.0035 -0.0008 0.9938 0.9976 0.013 0.0009 0.9446 -145 -0.002 -0.0149 -0.0009 0.0021 0.0013 -0.0018 0.9938 0.9941 0.015 -0.0055 0.9497 -146 -0.0036 -0.0151 0.0024 -0.0013 0.0012 0.0004 0.9976 0.9917 0.0123 -0.0032 0.9441 -147 -0.0032 -0.0116 0.001 0.0008 -0.0024 0.0006 1.001 0.9934 0.0108 -0.0065 0.9492 -148 -0.0023 -0.0083 0.0027 0.0005 0.0006 -0.0014 1.0014 0.9927 0.0136 -0.0067 0.94 -149 -0.001 -0.006 0.0022 0.0034 -0.0011 -0.0018 0.9997 0.9933 0.0132 -0.0049 0.9404 -150 -0.0024 -0.0073 -0.0011 0.0036 -0.0024 -0.0008 0.9975 0.9958 0.0165 -0.0064 0.9398 -151 0.0007 -0.0051 0.0008 0.0036 -0.003 -0.0012 1.0006 0.9932 0.0161 -0.0076 0.9372 -152 -0.0008 -0.0076 0.0025 0.0028 -0.0048 -0.0003 1.0016 0.992 0.015 -0.0095 0.9325 -153 -0.0029 -0.0045 0.0027 0.0051 -0.0046 -0.0039 0.9989 0.9913 0.0177 -0.0087 0.9232 -154 0.0002 -0.002 0.0061 0.0048 -0.0043 -0.0016 0.9989 0.9911 0.0152 -0.0072 0.916 -155 -0.001 -0.002 0.0015 0.0029 -0.0055 -0.0004 0.999 0.9915 0.0107 -0.0076 0.9119 -156 0.0028 -0.003 0.0009 0.0049 -0.0073 0.002 1.0 0.9946 0.0127 -0.0082 0.9095 -157 0.003 -0.0035 0.0008 0.0052 -0.0066 1e-04 1.0014 0.9977 0.0125 -0.0046 0.9069 -158 0.0063 -0.0023 -0.0005 0.0081 -0.0046 -0.0006 0.9983 0.997 0.0109 -0.003 0.9118 -159 0.0049 0.0002 -0.0013 0.0054 -0.0036 0.0009 1.0011 0.9967 0.0066 -0.0033 0.9177 diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/inspect.general.txt --- a/test-data/inspect.general.txt Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/inspect.general.txt Sun Nov 12 16:42:57 2023 +0000 @@ -1,3 +1,3 @@ -AnnData object with n_obs × n_vars = 640 × 11 +AnnData object with n_obs × n_vars = 500 × 11 obs: 'cell_type' - uns: 'cell_type_colors', 'highlights', 'iroot' + uns: 'highlights', 'iroot' diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/inspect.obs.tabular --- a/test-data/inspect.obs.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/inspect.obs.tabular Sun Nov 12 16:42:57 2023 +0000 @@ -1,4 +1,4 @@ -index cell_type + cell_type 0 progenitor 1 progenitor 2 progenitor @@ -499,143 +499,3 @@ 17 progenitor 18 progenitor 19 progenitor -20 progenitor -21 progenitor -22 progenitor -23 progenitor -24 progenitor -25 progenitor -26 progenitor -27 progenitor -28 progenitor -29 progenitor -30 progenitor -31 progenitor -32 progenitor -33 progenitor -34 progenitor -35 progenitor -36 progenitor -37 progenitor -38 progenitor -39 progenitor -40 progenitor -41 progenitor -42 progenitor -43 progenitor -44 progenitor -45 progenitor -46 progenitor -47 progenitor -48 progenitor -49 progenitor -50 progenitor -51 progenitor -52 progenitor -53 progenitor -54 progenitor -55 progenitor -56 progenitor -57 progenitor -58 progenitor -59 progenitor -60 progenitor -61 progenitor -62 progenitor -63 progenitor -64 progenitor -65 progenitor -66 progenitor -67 progenitor -68 progenitor -69 progenitor -70 progenitor -71 progenitor -72 progenitor -73 progenitor -74 progenitor -75 progenitor -76 progenitor -77 progenitor -78 progenitor -79 progenitor -80 Neu -81 Neu -82 Neu -83 Neu -84 Neu -85 Neu -86 Neu -87 Neu -88 Neu -89 Neu -90 Neu -91 Neu -92 Neu -93 Neu -94 Neu -95 Neu -96 Neu -97 Neu -98 Neu -99 Neu -100 Neu -101 Neu -102 Neu -103 Neu -104 Neu -105 Neu -106 Neu -107 Neu -108 Neu -109 Neu -110 Neu -111 Neu -112 Neu -113 Neu -114 Neu -115 Neu -116 Neu -117 Neu -118 Neu -119 Neu -120 Neu -121 Neu -122 Neu -123 Neu -124 Neu -125 Neu -126 Neu -127 Neu -128 Neu -129 Neu -130 Neu -131 Neu -132 Neu -133 Neu -134 Neu -135 Neu -136 Neu -137 Neu -138 Neu -139 Neu -140 Neu -141 Neu -142 Neu -143 Neu -144 Neu -145 Neu -146 Neu -147 Neu -148 Neu -149 Neu -150 Neu -151 Neu -152 Neu -153 Neu -154 Neu -155 Neu -156 Neu -157 Neu -158 Neu -159 Neu diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/inspect.var.tabular --- a/test-data/inspect.var.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/inspect.var.tabular Sun Nov 12 16:42:57 2023 +0000 @@ -1,4 +1,4 @@ -index +"" Gata2 Gata1 Fog1 diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/krumsiek11.h5ad Binary file test-data/krumsiek11.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/krumsiek11.loom Binary file test-data/krumsiek11.loom has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.add_annotation_obs.h5ad Binary file test-data/manipulate.add_annotation_obs.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.add_annotation_var.h5ad Binary file test-data/manipulate.add_annotation_var.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.concatenate.h5ad Binary file test-data/manipulate.concatenate.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.filter_obs_key.h5ad Binary file test-data/manipulate.filter_obs_key.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.filter_var_index.h5ad Binary file test-data/manipulate.filter_var_index.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.obs_names_make_unique.h5ad Binary file test-data/manipulate.obs_names_make_unique.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.rename_categories.h5ad Binary file test-data/manipulate.rename_categories.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.save_raw.h5ad Binary file test-data/manipulate.save_raw.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.strings_to_categoricals.h5ad Binary file test-data/manipulate.strings_to_categoricals.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.transpose.h5ad Binary file test-data/manipulate.transpose.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/manipulate.var_names_make_unique.h5ad Binary file test-data/manipulate.var_names_make_unique.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/obs_add_annotation.tabular --- a/test-data/obs_add_annotation.tabular Wed Jun 22 07:21:48 2022 +0000 +++ b/test-data/obs_add_annotation.tabular Sun Nov 12 16:42:57 2023 +0000 @@ -499,143 +499,3 @@ 17 progenitor 18 progenitor 19 progenitor -20 progenitor -21 progenitor -22 progenitor -23 progenitor -24 progenitor -25 progenitor -26 progenitor -27 progenitor -28 progenitor -29 progenitor -30 progenitor -31 progenitor -32 progenitor -33 progenitor -34 progenitor -35 progenitor -36 progenitor -37 progenitor -38 progenitor -39 progenitor -40 progenitor -41 progenitor -42 progenitor -43 progenitor -44 progenitor -45 progenitor -46 progenitor -47 progenitor -48 progenitor -49 progenitor -50 progenitor -51 progenitor -52 progenitor -53 progenitor -54 progenitor -55 progenitor -56 progenitor -57 progenitor -58 progenitor -59 progenitor -60 progenitor -61 progenitor -62 progenitor -63 progenitor -64 progenitor -65 progenitor -66 progenitor -67 progenitor -68 progenitor -69 progenitor -70 progenitor -71 progenitor -72 progenitor -73 progenitor -74 progenitor -75 progenitor -76 progenitor -77 progenitor -78 progenitor -79 progenitor -80 Neu -81 Neu -82 Neu -83 Neu -84 Neu -85 Neu -86 Neu -87 Neu -88 Neu -89 Neu -90 Neu -91 Neu -92 Neu -93 Neu -94 Neu -95 Neu -96 Neu -97 Neu -98 Neu -99 Neu -100 Neu -101 Neu -102 Neu -103 Neu -104 Neu -105 Neu -106 Neu -107 Neu -108 Neu -109 Neu -110 Neu -111 Neu -112 Neu -113 Neu -114 Neu -115 Neu -116 Neu -117 Neu -118 Neu -119 Neu -120 Neu -121 Neu -122 Neu -123 Neu -124 Neu -125 Neu -126 Neu -127 Neu -128 Neu -129 Neu -130 Neu -131 Neu -132 Neu -133 Neu -134 Neu -135 Neu -136 Neu -137 Neu -138 Neu -139 Neu -140 Neu -141 Neu -142 Neu -143 Neu -144 Neu -145 Neu -146 Neu -147 Neu -148 Neu -149 Neu -150 Neu -151 Neu -152 Neu -153 Neu -154 Neu -155 Neu -156 Neu -157 Neu -158 Neu -159 Neu diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad Binary file test-data/pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/pp.pca.krumsiek11.h5ad Binary file test-data/pp.pca.krumsiek11.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad Binary file test-data/tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad has changed diff -r fb9e030ffae4 -r 93dd15e13e6a test-data/tl.rank_genes_groups.krumsiek11.h5ad Binary file test-data/tl.rank_genes_groups.krumsiek11.h5ad has changed