Mercurial > repos > iuc > anndata_import
changeset 14:6f143dfe902a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit c1d84c1850c53deccc384de3960d2cec37bb2869
| author | iuc |
|---|---|
| date | Fri, 08 Nov 2024 21:59:09 +0000 |
| parents | d330b3082107 |
| children | |
| files | import.xml macros.xml |
| diffstat | 2 files changed, 10 insertions(+), 4 deletions(-) [+] |
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--- a/import.xml Sat Sep 14 19:58:24 2024 +0000 +++ b/import.xml Fri Nov 08 21:59:09 2024 +0000 @@ -12,6 +12,7 @@ <param name="gex_only" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Keep only 'Gene Expression' data and ignore other feature types?"/> </xml> </macros> + <expand macro="bio_tools"/> <expand macro="requirements"> <requirement type="package" version="1.10.2">scanpy</requirement> </expand> @@ -279,10 +280,10 @@ This tool creates an AnnData from several input types: -- Loom (`read_loom method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_loom.html>`__) -- Tabular (`read_csv method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_csv.html>`__) -- Matrix Market (mtx), from Cell ranger or not (`read_mtx method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_mtx.html>`__) -- UMI tools (`read_umi_tools method <https://anndata.readthedocs.io/en/latest/generated/anndata.read_umi_tools.html>`__) +- Loom (`read_loom method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_loom.html>`__) +- Tabular (`read_csv method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_csv.html>`__) +- Matrix Market (mtx), from Cell ranger or not (`read_mtx method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_mtx.html>`__) +- UMI tools (`read_umi_tools method <https://anndata.readthedocs.io/en/latest/generated/anndata.io.read_umi_tools.html>`__) @HELP@ ]]></help>