Mercurial > repos > iuc > anndata_inspect
changeset 12:0bf7fddf90c7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 67b3808b56df343798263ff0c905df8cb789edfa
| author | iuc |
|---|---|
| date | Sat, 14 Sep 2024 19:58:48 +0000 |
| parents | 6f0d0c784f09 |
| children | 14c576ea6148 |
| files | inspect.xml macros.xml test-data/addloomout1.loom test-data/addloomout3.loom test-data/converted.loom.test test-data/export.krumsiek11.loom test-data/import.csv.h5ad test-data/import.loom.krumsiek11.h5ad test-data/import.mtx.legacy_10x.h5ad test-data/import.mtx.no_10x.h5ad test-data/import.mtx.v3_10x.h5ad test-data/import.tsv.h5ad test-data/import.umi_tools.h5ad test-data/krumsiek11.h5ad test-data/manipulate.add_annotation_obs.h5ad test-data/manipulate.add_annotation_var.h5ad test-data/manipulate.concatenate.h5ad test-data/manipulate.filter_obs_key.h5ad test-data/manipulate.filter_var_index.h5ad test-data/manipulate.obs_names_make_unique.h5ad test-data/manipulate.rename_categories.h5ad test-data/manipulate.save_raw.h5ad test-data/manipulate.strings_to_categoricals.h5ad test-data/manipulate.transpose.h5ad test-data/manipulate.var_names_make_unique.h5ad test-data/pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad test-data/pp.pca.krumsiek11.h5ad test-data/tl.diffmap.h5ad test-data/tl.draw_graph.h5ad test-data/tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad test-data/tl.rank_genes_groups.krumsiek11.h5ad test-data/tl.tsne.h5ad test-data/tl.umap.h5ad |
| diffstat | 33 files changed, 13 insertions(+), 11 deletions(-) [+] |
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--- a/inspect.xml Sun Nov 12 16:43:58 2023 +0000 +++ b/inspect.xml Sat Sep 14 19:58:48 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="anndata_inspect" name="Inspect AnnData" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> +<tool id="anndata_inspect" name="Inspect AnnData" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>object</description> <macros> <import>macros.xml</import> @@ -283,7 +283,7 @@ </conditional> <output name="uns_neighbors_connectivities" ftype="mtx"> <assert_contents> - <has_text_matching expression="100 100 1248" /> + <has_text_matching expression="100 100 2496" /> <has_text_matching expression="4.880" /> </assert_contents> </output> @@ -305,14 +305,14 @@ <output name="uns_paga_connectivities" ftype="mtx"> <assert_contents> <has_text_matching expression="16 16 97" /> - <has_text_matching expression="1.000" /> + <has_text_matching expression="2 1 1" /> <has_text_matching expression="8.839" /> </assert_contents> </output> <output name="uns_paga_connectivities_tree" ftype="mtx"> <assert_contents> <has_text_matching expression="16 16 15" /> - <has_text_matching expression="1.000" /> + <has_text_matching expression="1 2 1" /> </assert_contents> </output> </test>
--- a/macros.xml Sun Nov 12 16:43:58 2023 +0000 +++ b/macros.xml Sat Sep 14 19:58:48 2024 +0000 @@ -1,6 +1,7 @@ <macros> - <token name="@TOOL_VERSION@">0.10.3</token> + <token name="@TOOL_VERSION@">0.10.9</token> <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">21.09</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">anndata</requirement> @@ -21,12 +22,6 @@ python '$script_file' ]]> </token> - <token name="@LOOMCMD@"><![CDATA[ -mkdir ./output && -mkdir ./attributes && -python '$__tool_directory__/loompy_to_tsv.py' -f '${hd5_format.input}' - ]]> - </token> <token name="@CMD_imports@"><![CDATA[ import anndata as ad ]]> @@ -76,4 +71,11 @@ </when> </conditional> </xml> + <xml name="sanitize_query" token_validinitial="string.printable"> + <sanitizer> + <valid initial="@VALIDINITIAL@"> + <remove value="'" /> + </valid> + </sanitizer> + </xml> </macros>
Binary file test-data/pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad has changed