Mercurial > repos > iuc > anndata_manipulate
changeset 7:43cb7b5a6fe7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 033c2d20a0c73cd84c5c3aee73ae224183a9c1c2"
| author | iuc |
|---|---|
| date | Wed, 22 Jul 2020 12:21:13 -0400 |
| parents | d4af736e7b83 |
| children | b85871dd69f9 |
| files | macros.xml manipulate.xml test-data/manipulate.concatenate.h5ad |
| diffstat | 3 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Mon Feb 10 05:21:44 2020 -0500 +++ b/macros.xml Wed Jul 22 12:21:13 2020 -0400 @@ -1,6 +1,6 @@ <macros> <token name="@VERSION@">0.6.22.post1</token> - <token name="@GALAXY_VERSION@">galaxy3</token> + <token name="@GALAXY_VERSION@">galaxy4</token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">anndata</requirement>
--- a/manipulate.xml Mon Feb 10 05:21:44 2020 -0500 +++ b/manipulate.xml Wed Jul 22 12:21:13 2020 -0400 @@ -26,7 +26,7 @@ #for i, filepath in enumerate($manipulate.other_adatas) adata_$i = ad.read('$filepath') #end for -adata.concatenate( +adata = adata.concatenate( #for i, filepath in enumerate($manipulate.other_adatas) adata_$i, #end for @@ -167,8 +167,8 @@ <param name="key" type="text" value="" label="Key for observations or variables annotation" help="Annotation key in obs or var"/> <param name="categories" type="text" value="" label="Comma-separated list of new categories" help="It should be the same number as the old categories"/> </when> - <when value="strings_to_categoricals"/> - <when value="transpose"/> + <when value="strings_to_categoricals" ></when> + <when value="transpose" ></when> <when value="add_annotation"> <param name="var_obs" type="select" label="What to annotate?"> <option value="var">Variables (var)</option> @@ -233,6 +233,7 @@ </when> </conditional> </when> + <when value="save_raw"></when> </conditional> </inputs> <outputs>