Mercurial > repos > iuc > anndata_manipulate
changeset 17:e6a8d5fdca85 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/anndata commit 7511ac8af2d638d0ad54f196b5ab3657c7577aa5
| author | iuc |
|---|---|
| date | Wed, 10 Dec 2025 17:01:48 +0000 |
| parents | be1fdce914c6 |
| children | |
| files | macros.xml manipulate.xml test-data/flagged.h5ad |
| diffstat | 3 files changed, 5 insertions(+), 3 deletions(-) [+] |
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--- a/macros.xml Sat Mar 29 07:37:00 2025 +0000 +++ b/macros.xml Wed Dec 10 17:01:48 2025 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">0.10.9</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">21.09</token> <xml name="requirements"> <requirements>
--- a/manipulate.xml Sat Mar 29 07:37:00 2025 +0000 +++ b/manipulate.xml Wed Dec 10 17:01:48 2025 +0000 @@ -85,7 +85,7 @@ #if $manipulate.var_keys #set $keys = [x.strip() for x in str($manipulate.var_keys).split(',')] -adata.var = adata.vars.drop(columns=$keys) +adata.var = adata.var.drop(columns=$keys) #end if #else if $manipulate.function == 'flag_genes' @@ -590,10 +590,11 @@ </test> <test expect_num_outputs="1"> <!-- test 10 remove_keys --> - <param name="input" value="krumsiek11.h5ad"/> + <param name="input" value="flagged.h5ad"/> <conditional name="manipulate"> <param name="function" value="remove_keys"/> <param name="obs_keys" value="cell_type"/> + <param name="var_keys" value="GF"/> </conditional> <assert_stdout> <has_text_matching expression="500 × 11"/> @@ -602,6 +603,7 @@ <assert_contents> <has_h5_keys keys="uns/highlights"/> <has_h5_keys keys="uns/iroot"/> + <has_h5_keys keys="var/Gata_TF"/> </assert_contents> </output> </test>