comparison annotateMyIDs.xml @ 10:f29602ae449e draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotatemyids commit 341ee309143af2e0d639fd7eb20d6bc03596b28a"

9:44018dd6b447

<tool id="annotatemyids" name="annotateMyIDs" version="3.12.0">
    <description>annotate a generic set of identifiers</description>
    <requirements>
        <requirement type="package" version="3.12.0">bioconductor-org.hs.eg.db</requirement>
        <requirement type="package" version="3.12.0">bioconductor-org.mm.eg.db</requirement>
        <requirement type="package" version="3.12.0">bioconductor-org.dm.eg.db</requirement>

        </param>
        <param name="remove_dups" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Remove duplicates?" help="If this option is set to Yes, only the first occurrence of each input Gene ID will be kept. Default: No" />
        <param name="rscriptOpt" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Output Rscript?" help="If this option is set to Yes, the Rscript used to annotate the IDs will be provided as a text file in the output. Default: No" />
    </inputs>
    <outputs>
        <data name="out_tab" format="tabular" from_work_dir="*.tab" label="${tool.name} on ${on_string}: Annotated IDs" />
        <data name="out_rscript" format="txt" from_work_dir="*.txt" label="${tool.name} on ${on_string}: Rscript">
            <filter>rscriptOpt is True</filter>
        </data>
    </outputs>
    <tests>
        <!-- Ensure output table works -->

10:f29602ae449e

<tool id="annotatemyids" name="annotateMyIDs" version="3.12.0+galaxy1">
    <description>annotate a generic set of identifiers</description>
    <requirements>
        <requirement type="package" version="3.12.0">bioconductor-org.hs.eg.db</requirement>
        <requirement type="package" version="3.12.0">bioconductor-org.mm.eg.db</requirement>
        <requirement type="package" version="3.12.0">bioconductor-org.dm.eg.db</requirement>

        </param>
        <param name="remove_dups" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Remove duplicates?" help="If this option is set to Yes, only the first occurrence of each input Gene ID will be kept. Default: No" />
        <param name="rscriptOpt" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Output Rscript?" help="If this option is set to Yes, the Rscript used to annotate the IDs will be provided as a text file in the output. Default: No" />
    </inputs>
    <outputs>
        <data name="out_tab" format="tabular" label="${tool.name} on ${on_string}: Annotated IDs" />
        <data name="out_rscript" format="txt" label="${tool.name} on ${on_string}: Rscript">
            <filter>rscriptOpt is True</filter>
        </data>
    </outputs>
    <tests>
        <!-- Ensure output table works -->