Mercurial > repos > iuc > annotatemyids
comparison annotateMyIDs.xml @ 10:f29602ae449e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotatemyids commit 341ee309143af2e0d639fd7eb20d6bc03596b28a"
author | iuc |
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date | Fri, 09 Jul 2021 14:20:02 +0000 |
parents | 44018dd6b447 |
children | 4f2967b27e67 |
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9:44018dd6b447 | 10:f29602ae449e |
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1 <tool id="annotatemyids" name="annotateMyIDs" version="3.12.0"> | 1 <tool id="annotatemyids" name="annotateMyIDs" version="3.12.0+galaxy1"> |
2 <description>annotate a generic set of identifiers</description> | 2 <description>annotate a generic set of identifiers</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="3.12.0">bioconductor-org.hs.eg.db</requirement> | 4 <requirement type="package" version="3.12.0">bioconductor-org.hs.eg.db</requirement> |
5 <requirement type="package" version="3.12.0">bioconductor-org.mm.eg.db</requirement> | 5 <requirement type="package" version="3.12.0">bioconductor-org.mm.eg.db</requirement> |
6 <requirement type="package" version="3.12.0">bioconductor-org.dm.eg.db</requirement> | 6 <requirement type="package" version="3.12.0">bioconductor-org.dm.eg.db</requirement> |
100 </param> | 100 </param> |
101 <param name="remove_dups" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Remove duplicates?" help="If this option is set to Yes, only the first occurrence of each input Gene ID will be kept. Default: No" /> | 101 <param name="remove_dups" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Remove duplicates?" help="If this option is set to Yes, only the first occurrence of each input Gene ID will be kept. Default: No" /> |
102 <param name="rscriptOpt" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Output Rscript?" help="If this option is set to Yes, the Rscript used to annotate the IDs will be provided as a text file in the output. Default: No" /> | 102 <param name="rscriptOpt" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Output Rscript?" help="If this option is set to Yes, the Rscript used to annotate the IDs will be provided as a text file in the output. Default: No" /> |
103 </inputs> | 103 </inputs> |
104 <outputs> | 104 <outputs> |
105 <data name="out_tab" format="tabular" from_work_dir="*.tab" label="${tool.name} on ${on_string}: Annotated IDs" /> | 105 <data name="out_tab" format="tabular" label="${tool.name} on ${on_string}: Annotated IDs" /> |
106 <data name="out_rscript" format="txt" from_work_dir="*.txt" label="${tool.name} on ${on_string}: Rscript"> | 106 <data name="out_rscript" format="txt" label="${tool.name} on ${on_string}: Rscript"> |
107 <filter>rscriptOpt is True</filter> | 107 <filter>rscriptOpt is True</filter> |
108 </data> | 108 </data> |
109 </outputs> | 109 </outputs> |
110 <tests> | 110 <tests> |
111 <!-- Ensure output table works --> | 111 <!-- Ensure output table works --> |