diff annotateMyIDs.xml @ 13:133f36c29579 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotatemyids commit 669d17e476ed4e3a57c697e42f690f9650e855d8

--- a/annotateMyIDs.xml	Tue Sep 13 09:25:40 2022 +0000
+++ b/annotateMyIDs.xml	Sat Jan 21 14:58:02 2023 +0000
@@ -4,7 +4,7 @@
         <xref type="bio.tools">annotatemyids</xref>
     </xrefs>
     <macros>
-        <token name="@TOOL_VERSION@">3.14.0</token>
+        <token name="@TOOL_VERSION@">3.16.0</token>
         <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <requirements>
@@ -147,7 +147,13 @@
             <param name="id_type" value="ENSEMBL"/>
             <param name="organism" value="Hs"/>
             <param name="output_cols" value="ENSEMBL,GO,ONTOLOGY,EVIDENCE" />
-            <output name="out_tab" file="out_gokegg.tab" />
+            <output name="out_tab">
+                <assert_contents>
+                    <has_n_columns n="4"/>
+                    <has_n_lines min="700"/>
+                    <has_text_matching expression="ENSG00000012048" min="80"/>
+                </assert_contents>
+            </output>
         </test>
         <!-- Ensure duplicate Gene ID removal works -->
         <test expect_num_outputs="1">
@@ -156,7 +162,13 @@
             <param name="organism" value="Hs"/>
             <param name="output_cols" value="ENSEMBL,GO,ONTOLOGY,EVIDENCE" />
             <param name="remove_dups" value="True" />
-            <output name="out_tab" file="out_gokegg_dupsrem.tab" />
+            <output name="out_tab">
+                <assert_contents>
+                    <has_n_columns n="4"/>
+                    <has_n_lines n="9"/>
+                    <has_text_matching expression="ENSG00000012048" n="1"/>
+                </assert_contents>
+            </output>
         </test>
         <!-- Arabidopsis database -->
         <test expect_num_outputs="1">
@@ -164,7 +176,13 @@
             <param name="id_type" value="SYMBOL"/>
             <param name="organism" value="At"/>
             <param name="output_cols" value="GO,ENTREZID" />
-            <output name="out_tab" file="out_arabidopsis.tab" />
+            <output name="out_tab">
+                <assert_contents>
+                    <has_n_columns n="5"/>
+                    <has_n_lines min="20"/>
+                    <has_text_matching expression="CLE13" min="5"/>
+                </assert_contents>
+            </output>
         </test>
         <!-- Gallus gallus database -->
         <test expect_num_outputs="1">
@@ -172,7 +190,13 @@
             <param name="id_type" value="SYMBOL"/>
             <param name="organism" value="Gg"/>
             <param name="output_cols" value="GO,ENTREZID" />
-            <output name="out_tab" file="out_gallus.tab" />
+            <output name="out_tab">
+                <assert_contents>
+                    <has_n_columns n="5"/>
+                    <has_n_lines min="40"/>
+                    <has_text_matching expression="TENM2" min="20"/>
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[