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changeset 0:442e2d79b05c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotatemyids commit 46271ad3015ee41a825860084b2ab9d8081ecab8
author iuc
date Wed, 03 Jan 2018 15:25:26 -0500
parents
children 2e1b256f732f
files annotateMyIDs.xml test-data/ensembl_ids.tab test-data/genelist.txt test-data/out.tab test-data/out_ensembl.tab test-data/out_gokegg.tab test-data/out_rscript.txt
diffstat 7 files changed, 965 insertions(+), 0 deletions(-) [+]
line wrap: on
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/annotateMyIDs.xml	Wed Jan 03 15:25:26 2018 -0500
@@ -0,0 +1,222 @@
+<tool id="annotateMyIDs" name="annotateMyIDs" version="3.5.0.0">
+    <description>annotate a generic set of identifiers</description>
+    <requirements>
+        <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement>
+        <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement>
+        <requirement type="package" version="3.5.0">bioconductor-org.dm.eg.db</requirement>
+        <requirement type="package" version="3.5.0">bioconductor-org.dr.eg.db</requirement>
+    </requirements>
+    <version_command><![CDATA[
+echo $(R --version | grep version | grep -v GNU)", org.Hs.eg.db version" $(R --vanilla --slave -e "library(org.Hs.eg.db); cat(sessionInfo()\$otherPkgs\$org.Hs.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", org.Dr.eg.db version" $(R --vanilla --slave -e "library(org.Dr.eg.db); cat(sessionInfo()\$otherPkgs\$org.Dr.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", org.Dm.eg.db version" $(R --vanilla --slave -e "library(org.Dm.eg.db); cat(sessionInfo()\$otherPkgs\$org.Dm.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", org.Mm.eg.db version" $(R --vanilla --slave -e "library(org.Mm.eg.db); cat(sessionInfo()\$otherPkgs\$org.Mm.eg.db\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", optparse version" $(R --vanilla --slave -e "library(optparse); cat(sessionInfo()\$otherPkgs\$optparse\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
+    ]]></version_command>
+    <command detect_errors="exit_code"><![CDATA[
+        #if $rscriptOpt:
+            cp '${annotatemyids_script}' '${out_rscript}' &&
+        #end if
+        Rscript '${annotatemyids_script}'
+    ]]>
+    </command>
+    <configfiles>
+        <configfile name="annotatemyids_script"><![CDATA[
+options( show.error.messages=F, error = function () { cat( geterrmessage(), file=stderr() ); q( "no", 1, F ) } )
+
+# we need that to not crash galaxy with an UTF8 error on German LC settings.
+loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8")
+
+id_type <- "${id_type}"
+organism <- "${organism}"
+output_cols <- "${output_cols}"
+file_has_header <- ${file_has_header}
+
+ids <- as.character(read.table('$id_file', header=file_has_header)[,1])
+
+if(organism == "Hs"){
+    suppressPackageStartupMessages(library(org.Hs.eg.db))
+    db <- org.Hs.eg.db
+} else if (organism == "Mm"){
+    suppressPackageStartupMessages(library(org.Mm.eg.db))
+    db <- org.Mm.eg.db
+} else if (organism == "Dm"){
+    suppressPackageStartupMessages(library(org.Dm.eg.db))
+    db <- org.Dm.eg.db
+} else if (organism == "Dr"){
+    suppressPackageStartupMessages(library(org.Dr.eg.db))
+    db <- org.Dr.eg.db
+} else {
+    cat(paste("Organism type not supported", organism))
+}
+
+cols <- unlist(strsplit(output_cols, ","))
+result <- select(db, keys=ids, keytype=id_type, columns=cols)
+write.table(result, file='$out_tab', sep="\t", row.names=FALSE, quote=FALSE)
+
+    ]]></configfile>
+    </configfiles>
+    <inputs>
+        <param name="id_file" type="data" format="tabular" label="File with IDs" help="A tabular file with the first column containing one of the supported types of identifier, see Help below." />
+        <param name="file_has_header" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="File has header?" help="If this option is set to Yes, the tool will assume that the input file has a column header in the first row and the identifers commence on the second line. Default: No" />
+        <param name="organism" type="select" label="Organism" help="Select the organism the identifiers are from">
+            <option value="Hs" selected="true">Human</option>
+            <option value="Mm">Mouse</option>
+            <option value="Dm">Fruit fly</option>
+            <option value="Dr">Zebrafish</option>
+        </param>
+        <param name="id_type" type="select" label="ID Type" help="Select the type of IDs in your input file">
+            <option value="ENSEMBL" selected="true">Ensembl Gene</option>
+            <option value="ENSEMBLPROT">Ensembl Protein</option>
+            <option value="ENSEMBLTRANS">Ensembl Transcript</option>
+            <option value="ENTREZID">Entrez</option>
+            <option value="FLYBASE">FlyBase</option>
+            <option value="GO">GO</option>
+            <option value="PATH">KEGG</option>
+            <option value="MGI">MGI</option>
+            <option value="REFSEQ">RefSeq</option>
+            <option value="SYMBOL">Gene Symbol</option>
+            <option value="ZFIN">Zfin</option>
+        </param>
+        <param name="output_cols" type="select" multiple="True" display="checkboxes" label="Output columns" help="Choose the columns you want in the output table. Note that selecting some columns such as GO or KEGG could make the table very large as some genes may be associated with many terms. Default: ENSEMBL, ENTREZID, SYMBOL, GENENAME">
+            <option value="ALIAS">ALIAS</option>
+            <option value="DESCRIPTION">DESCRIPTION</option>
+            <option value="ENSEMBL" selected="True">ENSEMBL</option>
+            <option value="ENTREZID" selected="True">ENTREZID</option>
+            <option value="EVIDENCE">EVIDENCE</option>
+            <option value="SYMBOL" selected="True">SYMBOL</option>
+            <option value="GENENAME" selected="True">GENENAME</option>
+            <option value="REFSEQ">REFSEQ</option>
+            <option value="GO">GO</option>
+            <option value="ONTOLOGY">ONTOLOGY</option>
+            <option value="PATH">KEGG</option>
+        </param>
+        <param name="rscriptOpt" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="False" label="Output Rscript?" help="If this option is set to Yes, the Rscript used to annotate the IDs will be provided as a text file in the output. Default: No" />
+    </inputs>
+    <outputs>
+        <data name="out_tab" format="tabular" from_work_dir="*.tab" label="${tool.name} on ${on_string}: Annotated IDs" />
+        <data name="out_rscript" format="txt" from_work_dir="*.txt" label="${tool.name} on ${on_string}: Rscript">
+            <filter>rscriptOpt is True</filter>
+        </data>
+    </outputs>
+    <tests>
+        <!-- Ensure output table works -->
+        <test expect_num_outputs="1">
+            <param name="id_file" value="genelist.txt" ftype="tabular"/>
+            <param name="id_type" value="SYMBOL"/>
+            <param name="organism" value="Hs"/>
+            <output name="out_tab" file="out.tab" />
+        </test>
+        <!-- Ensure Ensembl IDs input and Rscript output work -->
+        <test expect_num_outputs="2">
+            <param name="id_file" value="ensembl_ids.tab" ftype="tabular"/>
+            <param name="id_type" value="ENSEMBL"/>
+            <param name="organism" value="Hs"/>
+            <param name="rscriptOpt" value="True" />
+            <output name="out_tab" file="out_ensembl.tab" />
+            <output name="out_rscript" file="out_rscript.txt" compare="sim_size" />
+        </test>
+        <!-- Ensure GO and KEGG output work -->
+        <test expect_num_outputs="1">
+            <param name="id_file" value="ensembl_ids.tab" ftype="tabular"/>
+            <param name="id_type" value="ENSEMBL"/>
+            <param name="organism" value="Hs"/>
+            <param name="output_cols" value="ENSEMBL,GO,ONTOLOGY,EVIDENCE" />
+            <output name="out_tab" file="out_gokegg.tab" compare="contains" />
+        </test>
+    </tests>
+    <help><![CDATA[
+
+.. class:: infomark
+
+**What it does**
+
+This tool can get annotation for a generic set of IDs, using the Bioconductor_ annotation data packages. Supported organisms are human, mouse, fruit fly and zebrafish. The org.db packages that are used here are primarily based on mapping using Entrez Gene identifiers. More information on the annotation packages can be found at the Bioconductor website, for example, information on the human annotation package (org.Hs.eg.db) can be found here_.
+
+Examples of what this tool can be used for are:
+
+* adding gene names to IDs
+* mapping between IDs e.g. Entrez, Ensembl, Symbols
+* adding GO and KEGG identifiers
+
+.. _Bioconductor: https://www.bioconductor.org/
+.. _here: http://bioconductor.org/packages/release/data/annotation/manuals/org.Hs.eg.db/man/org.Hs.eg.db.pdf
+
+-----
+
+**Inputs**
+
+A tab-delimited file with identifiers in the first column. If the file contains a header row, select the file has a header option in the tool form above.
+
+Example:
+
+    =============== =======================
+    **GeneID**      *Additional Columns...*
+    --------------- -----------------------
+    ENSG00000091831
+    ENSG00000082175
+    ENSG00000141736
+    ENSG00000012048
+    ENSG00000139618
+    ENSG00000129514
+    ENSG00000171862
+    ENSG00000141510
+    =============== =======================
+
+    ID types supported for input are:
+
+    * **ENSEMBL**: Ensembl gene IDs
+    * **ENSEMBLPROT**: Ensembl protein IDs
+    * **ENSEMBLTRANS**: Ensembl transcript IDs
+    * **ENTREZID**: Entrez gene Identifiers
+    * **FLYBASE**: FlyBase accession numbers
+    * **GO**: GO Identifiers
+    * **MGI**: Jackson Laboratory MGI gene accession numbers
+    * **PATH**: KEGG Pathway Identifiers
+    * **REFSEQ**: Refseq Identifiers
+    * **SYMBOL**: The official gene symbol
+    * **ZFIN**: Zfin accession numbers
+
+.. class:: warningmark
+
+This tool uses the ``select`` function from the Bioconductor AnnotationDBi_ package. Note that if you request columns that have multiple matches for your IDs, select will return *one row in the output for each possible match*. This has the effect that if you request multiple columns and some of them have a many-to-one relationship to the IDs, things will continue to multiply accordingly. So it's not a good idea to request a large number of columns unless you know what you are asking for should have a one-to-one relationship with the initial set of IDs. In general, if you need to retrieve a column like **GO** or **KEGG**, that has a many-to-one relationship to the original IDs, it is most useful to extract that separately.
+
+.. _AnnotationDBi: https://www.bioconductor.org/packages/devel/bioc/manuals/AnnotationDbi/man/AnnotationDbi.pdf
+
+-----
+
+**Outputs**
+
+If the input IDs are Ensembl, the default output will be similar to below, containing four columns. Other columns, such as GO and KEGG terms, can be selected above to be added as additional columns.
+
+Example:
+
+    =============== ============ ========== =================================
+    **ENSEMBL**     **ENTREZID** **SYMBOL** **GENENAME**
+    --------------- ------------ ---------- ---------------------------------
+    ENSG00000091831  2099        ESR1       estrogen receptor 1
+    ENSG00000082175  5241        PGR        progesterone receptor
+    ENSG00000141736  2064        ERBB2      erb-b2 receptor tyrosine kinase 2
+    ENSG00000012048  672         BRCA1      breast cancer 1
+    ENSG00000139618  675         BRCA2      breast cancer 2
+    ENSG00000129514  3169        FOXA1      forkhead box A1
+    ENSG00000171862  5728        PTEN       phosphatase and tensin homolog
+    ENSG00000141510  7157        TP53       tumor protein p53
+    =============== ============ ========== =================================
+
+    Columns available for output include many of the ID columns already described under Inputs above and also:
+
+    * **ALIAS**: Commonly used gene symbols
+    * **DESCRIPTION**: The description of the associated gene
+    * **EVIDENCE**: Evidence codes for GO associations with a gene of interest
+    * **GENENAME**: The full gene name
+    * **ONTOLOGY**: For GO Identifiers, which Gene Ontology (BP, CC, or MF)
+
+    ]]></help>
+        <citations>
+            <citation type="bibtex">
+                @unpublished{None,
+                author = {Mark Dunning},
+                title = {annotateMyIDs},
+                year = {2017},
+                eprint = {None},
+                url = {}
+         }</citation>
+    </citations>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ensembl_ids.tab	Wed Jan 03 15:25:26 2018 -0500
@@ -0,0 +1,9 @@
+ENSG00000091831
+ENSG00000082175
+ENSG00000141736
+ENSG00000012048
+ENSG00000139618
+ENSG00000129514
+ENSG00000171862
+ENSG00000141510
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/genelist.txt	Wed Jan 03 15:25:26 2018 -0500
@@ -0,0 +1,8 @@
+ESR1
+PGR
+ERBB2
+BRCA1
+BRCA2
+FOXA1
+PTEN
+TP53
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out.tab	Wed Jan 03 15:25:26 2018 -0500
@@ -0,0 +1,9 @@
+SYMBOL	ENSEMBL	ENTREZID	GENENAME
+ESR1	ENSG00000091831	2099	estrogen receptor 1
+PGR	ENSG00000082175	5241	progesterone receptor
+ERBB2	ENSG00000141736	2064	erb-b2 receptor tyrosine kinase 2
+BRCA1	ENSG00000012048	672	BRCA1, DNA repair associated
+BRCA2	ENSG00000139618	675	BRCA2, DNA repair associated
+FOXA1	ENSG00000129514	3169	forkhead box A1
+PTEN	ENSG00000171862	5728	phosphatase and tensin homolog
+TP53	ENSG00000141510	7157	tumor protein p53
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_ensembl.tab	Wed Jan 03 15:25:26 2018 -0500
@@ -0,0 +1,9 @@
+ENSEMBL	ENTREZID	SYMBOL	GENENAME
+ENSG00000091831	2099	ESR1	estrogen receptor 1
+ENSG00000082175	5241	PGR	progesterone receptor
+ENSG00000141736	2064	ERBB2	erb-b2 receptor tyrosine kinase 2
+ENSG00000012048	672	BRCA1	BRCA1, DNA repair associated
+ENSG00000139618	675	BRCA2	BRCA2, DNA repair associated
+ENSG00000129514	3169	FOXA1	forkhead box A1
+ENSG00000171862	5728	PTEN	phosphatase and tensin homolog
+ENSG00000141510	7157	TP53	tumor protein p53
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_gokegg.tab	Wed Jan 03 15:25:26 2018 -0500
@@ -0,0 +1,674 @@
+ENSEMBL	GO	ONTOLOGY	EVIDENCE
+ENSG00000091831	GO:0000122	BP	IMP
+ENSG00000091831	GO:0000790	CC	IDA
+ENSG00000091831	GO:0000978	MF	IDA
+ENSG00000091831	GO:0001046	MF	IDA
+ENSG00000091831	GO:0001077	MF	IDA
+ENSG00000091831	GO:0001093	MF	IPI
+ENSG00000091831	GO:0001223	MF	IPI
+ENSG00000091831	GO:0001547	BP	IEA
+ENSG00000091831	GO:0002064	BP	IEA
+ENSG00000091831	GO:0003682	MF	IDA
+ENSG00000091831	GO:0003700	MF	NAS
+ENSG00000091831	GO:0003707	MF	TAS
+ENSG00000091831	GO:0005496	MF	ISS
+ENSG00000091831	GO:0005515	MF	IPI
+ENSG00000091831	GO:0005634	CC	IDA
+ENSG00000091831	GO:0005654	CC	TAS
+ENSG00000091831	GO:0005737	CC	IDA
+ENSG00000091831	GO:0005794	CC	IEA
+ENSG00000091831	GO:0005886	CC	IDA
+ENSG00000091831	GO:0006338	BP	NAS
+ENSG00000091831	GO:0006351	BP	TAS
+ENSG00000091831	GO:0006355	BP	NAS
+ENSG00000091831	GO:0006357	BP	TAS
+ENSG00000091831	GO:0006366	BP	IDA
+ENSG00000091831	GO:0006367	BP	TAS
+ENSG00000091831	GO:0007165	BP	TAS
+ENSG00000091831	GO:0007200	BP	ISS
+ENSG00000091831	GO:0007204	BP	ISS
+ENSG00000091831	GO:0008013	MF	IPI
+ENSG00000091831	GO:0008134	MF	IPI
+ENSG00000091831	GO:0008209	BP	IEA
+ENSG00000091831	GO:0008270	MF	IEA
+ENSG00000091831	GO:0008584	BP	IEA
+ENSG00000091831	GO:0010629	BP	IDA
+ENSG00000091831	GO:0010863	BP	ISS
+ENSG00000091831	GO:0016020	CC	NAS
+ENSG00000091831	GO:0016021	CC	IEA
+ENSG00000091831	GO:0016579	BP	TAS
+ENSG00000091831	GO:0017025	MF	IPI
+ENSG00000091831	GO:0019899	MF	IPI
+ENSG00000091831	GO:0019901	MF	IPI
+ENSG00000091831	GO:0030111	BP	TAS
+ENSG00000091831	GO:0030235	MF	NAS
+ENSG00000091831	GO:0030284	MF	IDA
+ENSG00000091831	GO:0030284	MF	NAS
+ENSG00000091831	GO:0030284	MF	TAS
+ENSG00000091831	GO:0030331	MF	IPI
+ENSG00000091831	GO:0030518	BP	ISS
+ENSG00000091831	GO:0030520	BP	IDA
+ENSG00000091831	GO:0030520	BP	NAS
+ENSG00000091831	GO:0032355	BP	IDA
+ENSG00000091831	GO:0033146	BP	TAS
+ENSG00000091831	GO:0034056	MF	IDA
+ENSG00000091831	GO:0034121	BP	IEA
+ENSG00000091831	GO:0035327	CC	IDA
+ENSG00000091831	GO:0038052	MF	IDA
+ENSG00000091831	GO:0038052	MF	IGI
+ENSG00000091831	GO:0042802	MF	IPI
+ENSG00000091831	GO:0042981	BP	IEA
+ENSG00000091831	GO:0043124	BP	IDA
+ENSG00000091831	GO:0043234	CC	IMP
+ENSG00000091831	GO:0043433	BP	IDA
+ENSG00000091831	GO:0043627	BP	IDA
+ENSG00000091831	GO:0045893	BP	IDA
+ENSG00000091831	GO:0045899	BP	IDA
+ENSG00000091831	GO:0045944	BP	IDA
+ENSG00000091831	GO:0048146	BP	IEA
+ENSG00000091831	GO:0048863	BP	IEA
+ENSG00000091831	GO:0050727	BP	IEA
+ENSG00000091831	GO:0051091	BP	IDA
+ENSG00000091831	GO:0051117	MF	IDA
+ENSG00000091831	GO:0060065	BP	IEA
+ENSG00000091831	GO:0060068	BP	IEA
+ENSG00000091831	GO:0060523	BP	IEA
+ENSG00000091831	GO:0060527	BP	IEA
+ENSG00000091831	GO:0060687	BP	IEA
+ENSG00000091831	GO:0060745	BP	IEA
+ENSG00000091831	GO:0060749	BP	IEA
+ENSG00000091831	GO:0060750	BP	IEA
+ENSG00000091831	GO:0071168	BP	IMP
+ENSG00000091831	GO:0071391	BP	IEA
+ENSG00000091831	GO:0071392	BP	IDA
+ENSG00000091831	GO:0071392	BP	ISS
+ENSG00000091831	GO:0097550	CC	IDA
+ENSG00000091831	GO:1903799	BP	IMP
+ENSG00000082175	GO:0000978	MF	IDA
+ENSG00000082175	GO:0001077	MF	IDA
+ENSG00000082175	GO:0001542	BP	IEA
+ENSG00000082175	GO:0002070	BP	IEA
+ENSG00000082175	GO:0003677	MF	TAS
+ENSG00000082175	GO:0003707	MF	IEA
+ENSG00000082175	GO:0004879	MF	IEA
+ENSG00000082175	GO:0005496	MF	IEA
+ENSG00000082175	GO:0005515	MF	IPI
+ENSG00000082175	GO:0005654	CC	TAS
+ENSG00000082175	GO:0005741	CC	IEA
+ENSG00000082175	GO:0005829	CC	TAS
+ENSG00000082175	GO:0006367	BP	TAS
+ENSG00000082175	GO:0007165	BP	TAS
+ENSG00000082175	GO:0007267	BP	TAS
+ENSG00000082175	GO:0008270	MF	IEA
+ENSG00000082175	GO:0010629	BP	IEP
+ENSG00000082175	GO:0019899	MF	IPI
+ENSG00000082175	GO:0038001	BP	IEA
+ENSG00000082175	GO:0042802	MF	IPI
+ENSG00000082175	GO:0045944	BP	IDA
+ENSG00000082175	GO:0048286	BP	IEA
+ENSG00000082175	GO:0050678	BP	IEA
+ENSG00000082175	GO:0050847	BP	IEA
+ENSG00000082175	GO:0051117	MF	IDA
+ENSG00000082175	GO:0060748	BP	IEA
+ENSG00000141736	GO:0000165	BP	TAS
+ENSG00000141736	GO:0001042	MF	IDA
+ENSG00000141736	GO:0001934	BP	ISS
+ENSG00000141736	GO:0004713	MF	IDA
+ENSG00000141736	GO:0004713	MF	IGI
+ENSG00000141736	GO:0004713	MF	TAS
+ENSG00000141736	GO:0004714	MF	IDA
+ENSG00000141736	GO:0004716	MF	IEA
+ENSG00000141736	GO:0004888	MF	IDA
+ENSG00000141736	GO:0005088	MF	TAS
+ENSG00000141736	GO:0005515	MF	IPI
+ENSG00000141736	GO:0005524	MF	IEA
+ENSG00000141736	GO:0005634	CC	IDA
+ENSG00000141736	GO:0005829	CC	IDA
+ENSG00000141736	GO:0005886	CC	IDA
+ENSG00000141736	GO:0005886	CC	NAS
+ENSG00000141736	GO:0005886	CC	TAS
+ENSG00000141736	GO:0006351	BP	IEA
+ENSG00000141736	GO:0006357	BP	TAS
+ENSG00000141736	GO:0006468	BP	TAS
+ENSG00000141736	GO:0007165	BP	IDA
+ENSG00000141736	GO:0007166	BP	IDA
+ENSG00000141736	GO:0007167	BP	TAS
+ENSG00000141736	GO:0007169	BP	IDA
+ENSG00000141736	GO:0007169	BP	TAS
+ENSG00000141736	GO:0007422	BP	IEA
+ENSG00000141736	GO:0007507	BP	IEA
+ENSG00000141736	GO:0007528	BP	IEA
+ENSG00000141736	GO:0008022	MF	IPI
+ENSG00000141736	GO:0008045	BP	IEA
+ENSG00000141736	GO:0008283	BP	TAS
+ENSG00000141736	GO:0010008	CC	IDA
+ENSG00000141736	GO:0014065	BP	IDA
+ENSG00000141736	GO:0016021	CC	NAS
+ENSG00000141736	GO:0016323	CC	IDA
+ENSG00000141736	GO:0016324	CC	IEA
+ENSG00000141736	GO:0018108	BP	IEA
+ENSG00000141736	GO:0019838	MF	IDA
+ENSG00000141736	GO:0019903	MF	IPI
+ENSG00000141736	GO:0030307	BP	IMP
+ENSG00000141736	GO:0032886	BP	IDA
+ENSG00000141736	GO:0033088	BP	IEA
+ENSG00000141736	GO:0038128	BP	TAS
+ENSG00000141736	GO:0042060	BP	IDA
+ENSG00000141736	GO:0042552	BP	IEA
+ENSG00000141736	GO:0042802	MF	IPI
+ENSG00000141736	GO:0043125	MF	TAS
+ENSG00000141736	GO:0043209	CC	IEA
+ENSG00000141736	GO:0043235	CC	IDA
+ENSG00000141736	GO:0043235	CC	TAS
+ENSG00000141736	GO:0043406	BP	IDA
+ENSG00000141736	GO:0043547	BP	ISS
+ENSG00000141736	GO:0045727	BP	IMP
+ENSG00000141736	GO:0045765	BP	NAS
+ENSG00000141736	GO:0045785	BP	IDA
+ENSG00000141736	GO:0045943	BP	IMP
+ENSG00000141736	GO:0045945	BP	IDA
+ENSG00000141736	GO:0046777	BP	IDA
+ENSG00000141736	GO:0046854	BP	IEA
+ENSG00000141736	GO:0046934	MF	TAS
+ENSG00000141736	GO:0046982	MF	IDA
+ENSG00000141736	GO:0046982	MF	IPI
+ENSG00000141736	GO:0046983	MF	NAS
+ENSG00000141736	GO:0048471	CC	IEA
+ENSG00000141736	GO:0048709	BP	IEA
+ENSG00000141736	GO:0050679	BP	IDA
+ENSG00000141736	GO:0051897	BP	TAS
+ENSG00000141736	GO:0070372	BP	IMP
+ENSG00000141736	GO:0071363	BP	IDA
+ENSG00000141736	GO:0071364	BP	IMP
+ENSG00000141736	GO:0090314	BP	IDA
+ENSG00000141736	GO:1901185	BP	TAS
+ENSG00000141736	GO:2000145	BP	TAS
+ENSG00000012048	GO:0000151	CC	NAS
+ENSG00000012048	GO:0000724	BP	IDA
+ENSG00000012048	GO:0000729	BP	TAS
+ENSG00000012048	GO:0000731	BP	TAS
+ENSG00000012048	GO:0000732	BP	TAS
+ENSG00000012048	GO:0000800	CC	IDA
+ENSG00000012048	GO:0001105	MF	IMP
+ENSG00000012048	GO:0003677	MF	TAS
+ENSG00000012048	GO:0003684	MF	IEA
+ENSG00000012048	GO:0003713	MF	NAS
+ENSG00000012048	GO:0003723	MF	IDA
+ENSG00000012048	GO:0004842	MF	IDA
+ENSG00000012048	GO:0005515	MF	IPI
+ENSG00000012048	GO:0005634	CC	IDA
+ENSG00000012048	GO:0005654	CC	TAS
+ENSG00000012048	GO:0005694	CC	ISS
+ENSG00000012048	GO:0005737	CC	IDA
+ENSG00000012048	GO:0005886	CC	IDA
+ENSG00000012048	GO:0006260	BP	TAS
+ENSG00000012048	GO:0006301	BP	IDA
+ENSG00000012048	GO:0006302	BP	IDA
+ENSG00000012048	GO:0006302	BP	IMP
+ENSG00000012048	GO:0006303	BP	TAS
+ENSG00000012048	GO:0006349	BP	IEA
+ENSG00000012048	GO:0006351	BP	IEA
+ENSG00000012048	GO:0006357	BP	IMP
+ENSG00000012048	GO:0006359	BP	TAS
+ENSG00000012048	GO:0006633	BP	IEA
+ENSG00000012048	GO:0006915	BP	TAS
+ENSG00000012048	GO:0006974	BP	TAS
+ENSG00000012048	GO:0006978	BP	TAS
+ENSG00000012048	GO:0007059	BP	IMP
+ENSG00000012048	GO:0007098	BP	IEA
+ENSG00000012048	GO:0008270	MF	IEA
+ENSG00000012048	GO:0008274	CC	NAS
+ENSG00000012048	GO:0008630	BP	IDA
+ENSG00000012048	GO:0009048	BP	IBA
+ENSG00000012048	GO:0010212	BP	IMP
+ENSG00000012048	GO:0010575	BP	IMP
+ENSG00000012048	GO:0010628	BP	IMP
+ENSG00000012048	GO:0015631	MF	NAS
+ENSG00000012048	GO:0016567	BP	IDA
+ENSG00000012048	GO:0016579	BP	TAS
+ENSG00000012048	GO:0019899	MF	IPI
+ENSG00000012048	GO:0030521	BP	NAS
+ENSG00000012048	GO:0030529	CC	IDA
+ENSG00000012048	GO:0031398	BP	IDA
+ENSG00000012048	GO:0031436	CC	IDA
+ENSG00000012048	GO:0031572	BP	IMP
+ENSG00000012048	GO:0031625	MF	IPI
+ENSG00000012048	GO:0033147	BP	IMP
+ENSG00000012048	GO:0035066	BP	IDA
+ENSG00000012048	GO:0035067	BP	IBA
+ENSG00000012048	GO:0042127	BP	TAS
+ENSG00000012048	GO:0042981	BP	TAS
+ENSG00000012048	GO:0043009	BP	IBA
+ENSG00000012048	GO:0043234	CC	IDA
+ENSG00000012048	GO:0043627	BP	IDA
+ENSG00000012048	GO:0044030	BP	IEA
+ENSG00000012048	GO:0044212	MF	IDA
+ENSG00000012048	GO:0044818	BP	IEA
+ENSG00000012048	GO:0045717	BP	IMP
+ENSG00000012048	GO:0045739	BP	IMP
+ENSG00000012048	GO:0045766	BP	IMP
+ENSG00000012048	GO:0045892	BP	IDA
+ENSG00000012048	GO:0045893	BP	IDA
+ENSG00000012048	GO:0045893	BP	NAS
+ENSG00000012048	GO:0045893	BP	TAS
+ENSG00000012048	GO:0045944	BP	IDA
+ENSG00000012048	GO:0045944	BP	IMP
+ENSG00000012048	GO:0046600	BP	NAS
+ENSG00000012048	GO:0050681	MF	NAS
+ENSG00000012048	GO:0051571	BP	IDA
+ENSG00000012048	GO:0051572	BP	IEA
+ENSG00000012048	GO:0051573	BP	IDA
+ENSG00000012048	GO:0051574	BP	IEA
+ENSG00000012048	GO:0051865	BP	IDA
+ENSG00000012048	GO:0070063	MF	IDA
+ENSG00000012048	GO:0070317	BP	TAS
+ENSG00000012048	GO:0070512	BP	IDA
+ENSG00000012048	GO:0070531	CC	IDA
+ENSG00000012048	GO:0071158	BP	IDA
+ENSG00000012048	GO:0071356	BP	IMP
+ENSG00000012048	GO:0071681	BP	IDA
+ENSG00000012048	GO:0085020	BP	IDA
+ENSG00000012048	GO:1901796	BP	TAS
+ENSG00000012048	GO:1902042	BP	IMP
+ENSG00000012048	GO:2000378	BP	IMP
+ENSG00000012048	GO:2000617	BP	IDA
+ENSG00000012048	GO:2000620	BP	IDA
+ENSG00000139618	GO:0000722	BP	IEA
+ENSG00000139618	GO:0000724	BP	IDA
+ENSG00000139618	GO:0000724	BP	IMP
+ENSG00000139618	GO:0000731	BP	TAS
+ENSG00000139618	GO:0000732	BP	TAS
+ENSG00000139618	GO:0000784	CC	IDA
+ENSG00000139618	GO:0000800	CC	IDA
+ENSG00000139618	GO:0000910	BP	IDA
+ENSG00000139618	GO:0001556	BP	IEA
+ENSG00000139618	GO:0001833	BP	IEA
+ENSG00000139618	GO:0002020	MF	IPI
+ENSG00000139618	GO:0003697	MF	IDA
+ENSG00000139618	GO:0005515	MF	IPI
+ENSG00000139618	GO:0005634	CC	IDA
+ENSG00000139618	GO:0005654	CC	IDA
+ENSG00000139618	GO:0005654	CC	TAS
+ENSG00000139618	GO:0005813	CC	IDA
+ENSG00000139618	GO:0005829	CC	IDA
+ENSG00000139618	GO:0006289	BP	IMP
+ENSG00000139618	GO:0006302	BP	IMP
+ENSG00000139618	GO:0006978	BP	IEA
+ENSG00000139618	GO:0007141	BP	IEA
+ENSG00000139618	GO:0007283	BP	IEA
+ENSG00000139618	GO:0007420	BP	IEA
+ENSG00000139618	GO:0007569	BP	IEA
+ENSG00000139618	GO:0008022	MF	IDA
+ENSG00000139618	GO:0008585	BP	IEA
+ENSG00000139618	GO:0010165	BP	IEA
+ENSG00000139618	GO:0010225	BP	IEA
+ENSG00000139618	GO:0010332	BP	IEA
+ENSG00000139618	GO:0010484	MF	IDA
+ENSG00000139618	GO:0010485	MF	IDA
+ENSG00000139618	GO:0030097	BP	IEA
+ENSG00000139618	GO:0030141	CC	IDA
+ENSG00000139618	GO:0032465	BP	IEA
+ENSG00000139618	GO:0033593	CC	IDA
+ENSG00000139618	GO:0033600	BP	IDA
+ENSG00000139618	GO:0042771	BP	IEA
+ENSG00000139618	GO:0042802	MF	IPI
+ENSG00000139618	GO:0043015	MF	IPI
+ENSG00000139618	GO:0043234	CC	IDA
+ENSG00000139618	GO:0043966	BP	IDA
+ENSG00000139618	GO:0043967	BP	IDA
+ENSG00000139618	GO:0045893	BP	IDA
+ENSG00000139618	GO:0045931	BP	IEA
+ENSG00000139618	GO:0048478	BP	IEA
+ENSG00000139618	GO:0051298	BP	IMP
+ENSG00000139618	GO:0070200	BP	IDA
+ENSG00000139618	GO:1990426	BP	IMP
+ENSG00000129514	GO:0000122	BP	IEA
+ENSG00000129514	GO:0000981	MF	IBA
+ENSG00000129514	GO:0001077	MF	ISS
+ENSG00000129514	GO:0001650	CC	IDA
+ENSG00000129514	GO:0003677	MF	IDA
+ENSG00000129514	GO:0003700	MF	TAS
+ENSG00000129514	GO:0005515	MF	IPI
+ENSG00000129514	GO:0005634	CC	IDA
+ENSG00000129514	GO:0005654	CC	IDA
+ENSG00000129514	GO:0005902	CC	IEA
+ENSG00000129514	GO:0006338	BP	ISS
+ENSG00000129514	GO:0006366	BP	IEA
+ENSG00000129514	GO:0007219	BP	IEA
+ENSG00000129514	GO:0008134	MF	IEA
+ENSG00000129514	GO:0009653	BP	IBA
+ENSG00000129514	GO:0010719	BP	IMP
+ENSG00000129514	GO:0016569	BP	IEA
+ENSG00000129514	GO:0019904	MF	IEA
+ENSG00000129514	GO:0021904	BP	IEA
+ENSG00000129514	GO:0032355	BP	IDA
+ENSG00000129514	GO:0033148	BP	IMP
+ENSG00000129514	GO:0042445	BP	IEA
+ENSG00000129514	GO:0042593	BP	IEA
+ENSG00000129514	GO:0043065	BP	IDA
+ENSG00000129514	GO:0043565	MF	IEA
+ENSG00000129514	GO:0044212	MF	IDA
+ENSG00000129514	GO:0045666	BP	IEA
+ENSG00000129514	GO:0045880	BP	IEA
+ENSG00000129514	GO:0045931	BP	IMP
+ENSG00000129514	GO:0045944	BP	IDA
+ENSG00000129514	GO:0045944	BP	IMP
+ENSG00000129514	GO:0048646	BP	IEA
+ENSG00000129514	GO:0048665	BP	IEA
+ENSG00000129514	GO:0051091	BP	IMP
+ENSG00000129514	GO:0060441	BP	IEA
+ENSG00000129514	GO:0060487	BP	IEA
+ENSG00000129514	GO:0060528	BP	IEA
+ENSG00000129514	GO:0060738	BP	IEA
+ENSG00000129514	GO:0060740	BP	IEA
+ENSG00000129514	GO:0060741	BP	IEA
+ENSG00000129514	GO:0060743	BP	IEA
+ENSG00000129514	GO:0061144	BP	IEA
+ENSG00000129514	GO:0071542	BP	TAS
+ENSG00000129514	GO:1902691	BP	IEA
+ENSG00000129514	GO:2000049	BP	IC
+ENSG00000171862	GO:0000079	BP	TAS
+ENSG00000171862	GO:0000287	MF	IEA
+ENSG00000171862	GO:0001525	BP	IEA
+ENSG00000171862	GO:0001933	BP	IDA
+ENSG00000171862	GO:0001933	BP	ISS
+ENSG00000171862	GO:0002902	BP	IEA
+ENSG00000171862	GO:0004438	MF	IDA
+ENSG00000171862	GO:0004721	MF	IDA
+ENSG00000171862	GO:0004722	MF	IDA
+ENSG00000171862	GO:0004725	MF	IDA
+ENSG00000171862	GO:0005161	MF	IEA
+ENSG00000171862	GO:0005515	MF	IPI
+ENSG00000171862	GO:0005576	CC	IEA
+ENSG00000171862	GO:0005634	CC	IDA
+ENSG00000171862	GO:0005654	CC	IDA
+ENSG00000171862	GO:0005654	CC	TAS
+ENSG00000171862	GO:0005737	CC	IDA
+ENSG00000171862	GO:0005737	CC	TAS
+ENSG00000171862	GO:0005739	CC	IEA
+ENSG00000171862	GO:0005829	CC	IDA
+ENSG00000171862	GO:0005829	CC	TAS
+ENSG00000171862	GO:0005886	CC	IDA
+ENSG00000171862	GO:0006470	BP	IDA
+ENSG00000171862	GO:0006470	BP	TAS
+ENSG00000171862	GO:0006661	BP	TAS
+ENSG00000171862	GO:0006915	BP	ISS
+ENSG00000171862	GO:0007270	BP	ISS
+ENSG00000171862	GO:0007416	BP	ISS
+ENSG00000171862	GO:0007417	BP	ISS
+ENSG00000171862	GO:0007507	BP	ISS
+ENSG00000171862	GO:0007568	BP	IEA
+ENSG00000171862	GO:0007584	BP	IEA
+ENSG00000171862	GO:0007611	BP	ISS
+ENSG00000171862	GO:0007613	BP	IEA
+ENSG00000171862	GO:0007626	BP	ISS
+ENSG00000171862	GO:0008138	MF	IEA
+ENSG00000171862	GO:0008283	BP	TAS
+ENSG00000171862	GO:0008284	BP	ISS
+ENSG00000171862	GO:0008285	BP	IDA
+ENSG00000171862	GO:0008285	BP	IMP
+ENSG00000171862	GO:0008289	MF	IEA
+ENSG00000171862	GO:0009749	BP	IEA
+ENSG00000171862	GO:0009898	CC	IDA
+ENSG00000171862	GO:0010043	BP	IEA
+ENSG00000171862	GO:0010628	BP	IEA
+ENSG00000171862	GO:0010666	BP	IEA
+ENSG00000171862	GO:0010719	BP	IMP
+ENSG00000171862	GO:0010975	BP	ISS
+ENSG00000171862	GO:0010997	MF	IPI
+ENSG00000171862	GO:0014067	BP	NAS
+ENSG00000171862	GO:0014067	BP	TAS
+ENSG00000171862	GO:0014823	BP	IEA
+ENSG00000171862	GO:0016314	MF	IDA
+ENSG00000171862	GO:0016314	MF	TAS
+ENSG00000171862	GO:0016324	CC	IMP
+ENSG00000171862	GO:0016477	BP	ISS
+ENSG00000171862	GO:0016579	BP	TAS
+ENSG00000171862	GO:0016605	CC	IEA
+ENSG00000171862	GO:0019899	MF	IPI
+ENSG00000171862	GO:0021542	BP	ISS
+ENSG00000171862	GO:0021955	BP	ISS
+ENSG00000171862	GO:0030165	MF	IPI
+ENSG00000171862	GO:0030336	BP	IMP
+ENSG00000171862	GO:0030534	BP	IEA
+ENSG00000171862	GO:0031642	BP	IEA
+ENSG00000171862	GO:0031647	BP	IMP
+ENSG00000171862	GO:0031658	BP	IDA
+ENSG00000171862	GO:0032228	BP	IEA
+ENSG00000171862	GO:0032286	BP	ISS
+ENSG00000171862	GO:0032355	BP	IEA
+ENSG00000171862	GO:0032535	BP	ISS
+ENSG00000171862	GO:0032869	BP	IEA
+ENSG00000171862	GO:0033032	BP	IEA
+ENSG00000171862	GO:0033198	BP	IEA
+ENSG00000171862	GO:0033555	BP	ISS
+ENSG00000171862	GO:0035176	BP	ISS
+ENSG00000171862	GO:0035255	MF	IEA
+ENSG00000171862	GO:0035335	BP	IEA
+ENSG00000171862	GO:0035749	CC	ISS
+ENSG00000171862	GO:0042493	BP	IEA
+ENSG00000171862	GO:0042711	BP	IEA
+ENSG00000171862	GO:0042802	MF	IPI
+ENSG00000171862	GO:0042995	CC	IDA
+ENSG00000171862	GO:0043005	CC	ISS
+ENSG00000171862	GO:0043066	BP	IEA
+ENSG00000171862	GO:0043197	CC	IEA
+ENSG00000171862	GO:0043220	CC	ISS
+ENSG00000171862	GO:0043491	BP	ISS
+ENSG00000171862	GO:0043542	BP	IEA
+ENSG00000171862	GO:0043647	BP	TAS
+ENSG00000171862	GO:0044320	BP	IEA
+ENSG00000171862	GO:0045211	CC	IEA
+ENSG00000171862	GO:0045475	BP	ISS
+ENSG00000171862	GO:0045666	BP	IEA
+ENSG00000171862	GO:0045792	BP	ISS
+ENSG00000171862	GO:0046621	BP	ISS
+ENSG00000171862	GO:0046685	BP	IEA
+ENSG00000171862	GO:0046855	BP	IDA
+ENSG00000171862	GO:0046856	BP	IDA
+ENSG00000171862	GO:0046856	BP	IMP
+ENSG00000171862	GO:0048008	BP	IEA
+ENSG00000171862	GO:0048681	BP	IEA
+ENSG00000171862	GO:0048738	BP	IEA
+ENSG00000171862	GO:0048853	BP	ISS
+ENSG00000171862	GO:0048854	BP	ISS
+ENSG00000171862	GO:0050680	BP	IEA
+ENSG00000171862	GO:0050765	BP	IEA
+ENSG00000171862	GO:0050771	BP	ISS
+ENSG00000171862	GO:0050821	BP	IDA
+ENSG00000171862	GO:0051091	BP	IMP
+ENSG00000171862	GO:0051548	BP	IMP
+ENSG00000171862	GO:0051717	MF	IDA
+ENSG00000171862	GO:0051717	MF	TAS
+ENSG00000171862	GO:0051800	MF	IDA
+ENSG00000171862	GO:0051800	MF	TAS
+ENSG00000171862	GO:0051895	BP	IMP
+ENSG00000171862	GO:0051898	BP	IMP
+ENSG00000171862	GO:0051898	BP	TAS
+ENSG00000171862	GO:0060024	BP	ISS
+ENSG00000171862	GO:0060044	BP	IEA
+ENSG00000171862	GO:0060070	BP	IDA
+ENSG00000171862	GO:0060074	BP	ISS
+ENSG00000171862	GO:0060134	BP	ISS
+ENSG00000171862	GO:0060179	BP	IEA
+ENSG00000171862	GO:0060291	BP	IEA
+ENSG00000171862	GO:0060292	BP	IEA
+ENSG00000171862	GO:0060736	BP	IEA
+ENSG00000171862	GO:0060997	BP	ISS
+ENSG00000171862	GO:0061002	BP	ISS
+ENSG00000171862	GO:0070373	BP	IMP
+ENSG00000171862	GO:0070374	BP	IEA
+ENSG00000171862	GO:0071257	BP	IMP
+ENSG00000171862	GO:0071361	BP	IEA
+ENSG00000171862	GO:0071456	BP	IEA
+ENSG00000171862	GO:0090071	BP	IEA
+ENSG00000171862	GO:0090344	BP	IEA
+ENSG00000171862	GO:0090394	BP	ISS
+ENSG00000171862	GO:0097105	BP	ISS
+ENSG00000171862	GO:0097107	BP	ISS
+ENSG00000171862	GO:1901017	BP	IEA
+ENSG00000171862	GO:1903690	BP	IMP
+ENSG00000171862	GO:1903984	BP	IMP
+ENSG00000171862	GO:1904668	BP	IDA
+ENSG00000171862	GO:1990090	BP	IEA
+ENSG00000171862	GO:1990314	BP	IEA
+ENSG00000171862	GO:1990381	MF	IPI
+ENSG00000171862	GO:1990782	MF	IEA
+ENSG00000171862	GO:2000060	BP	IDA
+ENSG00000171862	GO:2000134	BP	IDA
+ENSG00000171862	GO:2000272	BP	IEA
+ENSG00000171862	GO:2000463	BP	ISS
+ENSG00000171862	GO:2000808	BP	ISS
+ENSG00000141510	GO:0000122	BP	IBA
+ENSG00000141510	GO:0000122	BP	ISS
+ENSG00000141510	GO:0000733	BP	IDA
+ENSG00000141510	GO:0000790	CC	IDA
+ENSG00000141510	GO:0000977	MF	IDA
+ENSG00000141510	GO:0000981	MF	IDA
+ENSG00000141510	GO:0000990	MF	IDA
+ENSG00000141510	GO:0001046	MF	IDA
+ENSG00000141510	GO:0001046	MF	ISS
+ENSG00000141510	GO:0001085	MF	IPI
+ENSG00000141510	GO:0001228	MF	IDA
+ENSG00000141510	GO:0002020	MF	IPI
+ENSG00000141510	GO:0002039	MF	IPI
+ENSG00000141510	GO:0003677	MF	IDA
+ENSG00000141510	GO:0003677	MF	IMP
+ENSG00000141510	GO:0003682	MF	IDA
+ENSG00000141510	GO:0003684	MF	IBA
+ENSG00000141510	GO:0003700	MF	IDA
+ENSG00000141510	GO:0003700	MF	IMP
+ENSG00000141510	GO:0003730	MF	IDA
+ENSG00000141510	GO:0005507	MF	IDA
+ENSG00000141510	GO:0005515	MF	IPI
+ENSG00000141510	GO:0005524	MF	IDA
+ENSG00000141510	GO:0005622	CC	IDA
+ENSG00000141510	GO:0005634	CC	IDA
+ENSG00000141510	GO:0005634	CC	IMP
+ENSG00000141510	GO:0005654	CC	IDA
+ENSG00000141510	GO:0005654	CC	TAS
+ENSG00000141510	GO:0005657	CC	IBA
+ENSG00000141510	GO:0005669	CC	IDA
+ENSG00000141510	GO:0005730	CC	IDA
+ENSG00000141510	GO:0005737	CC	IDA
+ENSG00000141510	GO:0005737	CC	IMP
+ENSG00000141510	GO:0005739	CC	IDA
+ENSG00000141510	GO:0005759	CC	IEA
+ENSG00000141510	GO:0005783	CC	IEA
+ENSG00000141510	GO:0005829	CC	IDA
+ENSG00000141510	GO:0005829	CC	TAS
+ENSG00000141510	GO:0006284	BP	TAS
+ENSG00000141510	GO:0006289	BP	IMP
+ENSG00000141510	GO:0006355	BP	IDA
+ENSG00000141510	GO:0006355	BP	IMP
+ENSG00000141510	GO:0006366	BP	IEA
+ENSG00000141510	GO:0006461	BP	IDA
+ENSG00000141510	GO:0006914	BP	IMP
+ENSG00000141510	GO:0006974	BP	IDA
+ENSG00000141510	GO:0006977	BP	IMP
+ENSG00000141510	GO:0006977	BP	TAS
+ENSG00000141510	GO:0006978	BP	IDA
+ENSG00000141510	GO:0006978	BP	IMP
+ENSG00000141510	GO:0006983	BP	IDA
+ENSG00000141510	GO:0007050	BP	IDA
+ENSG00000141510	GO:0007050	BP	IMP
+ENSG00000141510	GO:0007265	BP	IEP
+ENSG00000141510	GO:0007275	BP	IMP
+ENSG00000141510	GO:0007569	BP	IMP
+ENSG00000141510	GO:0008104	BP	IDA
+ENSG00000141510	GO:0008134	MF	IPI
+ENSG00000141510	GO:0008270	MF	TAS
+ENSG00000141510	GO:0008283	BP	TAS
+ENSG00000141510	GO:0008285	BP	IDA
+ENSG00000141510	GO:0008285	BP	IMP
+ENSG00000141510	GO:0008285	BP	ISS
+ENSG00000141510	GO:0008340	BP	ISS
+ENSG00000141510	GO:0009299	BP	IMP
+ENSG00000141510	GO:0010165	BP	IBA
+ENSG00000141510	GO:0010332	BP	IMP
+ENSG00000141510	GO:0010628	BP	IDA
+ENSG00000141510	GO:0010628	BP	IMP
+ENSG00000141510	GO:0010628	BP	ISS
+ENSG00000141510	GO:0016032	BP	IMP
+ENSG00000141510	GO:0016363	CC	IDA
+ENSG00000141510	GO:0016579	BP	TAS
+ENSG00000141510	GO:0016604	CC	IDA
+ENSG00000141510	GO:0016605	CC	IDA
+ENSG00000141510	GO:0019899	MF	IPI
+ENSG00000141510	GO:0019901	MF	IPI
+ENSG00000141510	GO:0019903	MF	IPI
+ENSG00000141510	GO:0030154	BP	TAS
+ENSG00000141510	GO:0030308	BP	IMP
+ENSG00000141510	GO:0030330	BP	IDA
+ENSG00000141510	GO:0030330	BP	IMP
+ENSG00000141510	GO:0030971	MF	IPI
+ENSG00000141510	GO:0031065	BP	IBA
+ENSG00000141510	GO:0031497	BP	IDA
+ENSG00000141510	GO:0031571	BP	IMP
+ENSG00000141510	GO:0031625	MF	IPI
+ENSG00000141510	GO:0032461	BP	IDA
+ENSG00000141510	GO:0034644	BP	IDA
+ENSG00000141510	GO:0035035	MF	IPI
+ENSG00000141510	GO:0035690	BP	IEP
+ENSG00000141510	GO:0042149	BP	IDA
+ENSG00000141510	GO:0042771	BP	IDA
+ENSG00000141510	GO:0042771	BP	IMP
+ENSG00000141510	GO:0042802	MF	IMP
+ENSG00000141510	GO:0042802	MF	IPI
+ENSG00000141510	GO:0042826	MF	IPI
+ENSG00000141510	GO:0042981	BP	IDA
+ENSG00000141510	GO:0042981	BP	TAS
+ENSG00000141510	GO:0043065	BP	IDA
+ENSG00000141510	GO:0043066	BP	IMP
+ENSG00000141510	GO:0043153	BP	ISS
+ENSG00000141510	GO:0043161	BP	TAS
+ENSG00000141510	GO:0043234	CC	IDA
+ENSG00000141510	GO:0043234	CC	IMP
+ENSG00000141510	GO:0043525	BP	IBA
+ENSG00000141510	GO:0043621	MF	IPI
+ENSG00000141510	GO:0044212	MF	IDA
+ENSG00000141510	GO:0045892	BP	IDA
+ENSG00000141510	GO:0045892	BP	IMP
+ENSG00000141510	GO:0045892	BP	ISS
+ENSG00000141510	GO:0045893	BP	IDA
+ENSG00000141510	GO:0045893	BP	IMP
+ENSG00000141510	GO:0045944	BP	IDA
+ENSG00000141510	GO:0045944	BP	IGI
+ENSG00000141510	GO:0045944	BP	IMP
+ENSG00000141510	GO:0046677	BP	IEP
+ENSG00000141510	GO:0046827	BP	TAS
+ENSG00000141510	GO:0046902	BP	TAS
+ENSG00000141510	GO:0046982	MF	IPI
+ENSG00000141510	GO:0047485	MF	IPI
+ENSG00000141510	GO:0048147	BP	IMP
+ENSG00000141510	GO:0048512	BP	ISS
+ENSG00000141510	GO:0050731	BP	ISS
+ENSG00000141510	GO:0051087	MF	IPI
+ENSG00000141510	GO:0051097	BP	TAS
+ENSG00000141510	GO:0051262	BP	TAS
+ENSG00000141510	GO:0051289	BP	IMP
+ENSG00000141510	GO:0051721	MF	IPI
+ENSG00000141510	GO:0051974	BP	IDA
+ENSG00000141510	GO:0070245	BP	ISS
+ENSG00000141510	GO:0071158	BP	IDA
+ENSG00000141510	GO:0071158	BP	IMP
+ENSG00000141510	GO:0071456	BP	IEP
+ENSG00000141510	GO:0071479	BP	IMP
+ENSG00000141510	GO:0071480	BP	IDA
+ENSG00000141510	GO:0072331	BP	IDA
+ENSG00000141510	GO:0072332	BP	IMP
+ENSG00000141510	GO:0072717	BP	IDA
+ENSG00000141510	GO:0090200	BP	IDA
+ENSG00000141510	GO:0090399	BP	IMP
+ENSG00000141510	GO:0090403	BP	IMP
+ENSG00000141510	GO:0097193	BP	TAS
+ENSG00000141510	GO:0097252	BP	IDA
+ENSG00000141510	GO:0097718	MF	IPI
+ENSG00000141510	GO:1900119	BP	IMP
+ENSG00000141510	GO:1900740	BP	TAS
+ENSG00000141510	GO:1901796	BP	TAS
+ENSG00000141510	GO:1902749	BP	TAS
+ENSG00000141510	GO:1902895	BP	IDA
+ENSG00000141510	GO:1990440	BP	ISS
+ENSG00000141510	GO:2000379	BP	IMP
+ENSG00000141510	GO:2001244	BP	IMP
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_rscript.txt	Wed Jan 03 15:25:26 2018 -0500
@@ -0,0 +1,34 @@
+
+options( show.error.messages=F, error = function () { cat( geterrmessage(), file=stderr() ); q( "no", 1, F ) } )
+
+# we need that to not crash galaxy with an UTF8 error on German LC settings.
+loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8")
+
+id_type <- "ENSEMBL"
+organism <- "Hs"
+output_cols <- "ENSEMBL,ENTREZID,SYMBOL,GENENAME"
+file_has_header <- FALSE
+
+ids <- as.character(read.table("/tmp/tmpY5XREO/files/000/dataset_3.dat", header=file_has_header)[,1])
+
+if(organism == "Hs"){
+    suppressPackageStartupMessages(library(org.Hs.eg.db))
+    db <- org.Hs.eg.db
+} else if (organism == "Mm"){
+    suppressPackageStartupMessages(library(org.Mm.eg.db))
+    db <- org.Mm.eg.db
+} else if (organism == "Dm"){
+    suppressPackageStartupMessages(library(org.Dm.eg.db))
+    db <- org.Dm.eg.db
+} else if (organism == "Dr"){
+    suppressPackageStartupMessages(library(org.Dr.eg.db))
+    db <- org.Dr.eg.db
+} else {
+    cat(paste("Organism type not supported", organism))
+}
+
+cols <- unlist(strsplit(output_cols, ","))
+result <- select(db, keys=ids, keytype=id_type, columns=cols)
+write.table(result, file="/tmp/tmpY5XREO/files/000/dataset_4.dat", sep="\t", row.names=FALSE, quote=FALSE)
+
+    
\ No newline at end of file