Mercurial > repos > iuc > argnorm

annotate test-data/deeparg_hamronize_argnorm_results.tsv @ 1:d8e95a03321a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
author iuc
date Wed, 23 Apr 2025 09:04:24 +0000
parents bae2bc0f1b66
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
1 # argNorm version: 1.0.0
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
2 input_file_name gene_symbol gene_name reference_database_name reference_database_version reference_accession analysis_software_name analysis_software_version genetic_variation_type antimicrobial_agent coverage_percentage coverage_depth coverage_ratio drug_class input_gene_length input_gene_start input_gene_stop input_protein_length input_protein_start input_protein_stop input_sequence_id nucleotide_mutation nucleotide_mutation_interpretation predicted_phenotype predicted_phenotype_confidence_level amino_acid_mutation amino_acid_mutation_interpretation reference_gene_length reference_gene_start reference_gene_stop reference_protein_length reference_protein_start reference_protein_stop resistance_mechanism strand_orientation sequence_identity ARO ARO_name Cut_Off confers_resistance_to confers_resistance_to_names resistance_to_drug_classes resistance_to_drug_classes_names
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
3 HSM7J4M8 TETQ ZP_04557016|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 ZP_04557016 deeparg 1.0.2 gene_presence_detected tetracycline 191 223 CAVL1ANXX170419:8:1211:20929:16342/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
4 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 274 306 CAVL1ANXX170419:8:1211:20929:16342/2 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
5 HSM7J4M8 UGD AAC75089.1|FEATURES|ugd|peptide|ugd deeparg_db 1 AAC75089.1 deeparg 1.0.2 gene_presence_detected peptide 242 274 CAW05ANXX170413:3:1311:9080:27889/2 87.9 ARO:3003577 ugd Perfect ARO:3000454 polymyxin B ARO:3000053 peptide antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
6 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 452 484 CAVL1ANXX170419:7:1112:17911:9537/1 87.9 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
7 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 428 471 CAW05ANXX170413:3:2313:9964:68847/1 81.8 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
8 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 245 277 CAW05ANXX170413:4:2211:15535:39005/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
9 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 125 156 CAW05ANXX170413:3:1315:16625:39188/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
10 HSM7J4M8 CLASS_A P30898|FEATURES|class_A|beta-lactam|class_A deeparg_db 1 P30898 deeparg 1.0.2 gene_presence_detected beta-lactam 168 214 CAW05ANXX170413:4:2110:17870:97415/1 100.0 ARO:3002999 CblA-1 Perfect ARO:0000032,ARO:3004129 cephalosporin,cephaloridine ARO:3000007,ARO:3000007 beta-lactam antibiotic,beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
11 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1034 1066 CAVL1ANXX170419:7:2114:1131:86489/1 84.8 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
12 HSM7J4M8 TETW CAO78565|FEATURES|tetW|tetracycline|tetW deeparg_db 1 CAO78565 deeparg 1.0.2 gene_presence_detected tetracycline 395 435 CAW05ANXX170413:2:2115:3176:4503/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
13 HSM7J4M8 TETW AAL09826|FEATURES|tetW|tetracycline|tetW deeparg_db 1 AAL09826 deeparg 1.0.2 gene_presence_detected tetracycline 265 324 CAVL1ANXX170419:8:1111:1611:100037/1 91.7 ARO:3007124 tet(W/32/O) Perfect ARO:0000051 tetracycline ARO:3000050 tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
14 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 448 480 CAVL1ANXX170419:7:1301:9203:5016/1 87.9 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
15 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1036 1094 CAW05ANXX170413:4:2308:19209:54439/1 83.1 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
16 HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 528 560 CAW05ANXX170413:2:2204:11751:81368/2 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
17 HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 558 590 CAW05ANXX170413:2:2204:11751:81368/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
18 HSM7J4M8 DFRF AAD01868.1|FEATURES|dfrF|diaminopyrimidine|dfrF deeparg_db 1 AAD01868.1 deeparg 1.0.2 gene_presence_detected diaminopyrimidine 1 45 CAW05ANXX170413:4:2304:5201:21397/1 100.0 ARO:3002867 dfrF Perfect ARO:3000188 trimethoprim ARO:3000171 diaminopyrimidine antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
19 HSM7J4M8 EFRB CDO61516.1|FEATURES|efrB|multidrug|efrB deeparg_db 1 CDO61516.1 deeparg 1.0.2 gene_presence_detected multidrug 324 362 CAW05ANXX170413:4:2108:11625:97887/1 84.6 ARO:3003949 efrB Perfect ARO:0000006,ARO:0000036,ARO:3000169 erythromycin,ciprofloxacin,rifampin ARO:0000000,ARO:0000001,ARO:3000157 macrolide antibiotic,fluoroquinolone antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
20 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 438 467 CAVL1ANXX170419:8:1216:14948:70047/1 90.0 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
21 HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 243 271 CAW05ANXX170413:3:2213:5573:28523/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
22 HSM7J4M8 CLASS_A gi:511019447:ref:WP_016273783.1:|FEATURES|class_A|beta-lactam|class_A deeparg_db 1 gi:511019447:ref:WP_016273783.1: deeparg 1.0.2 gene_presence_detected beta-lactam 234 266 CAW05ANXX170413:4:2101:11889:11483/2 100.0 ARO:3002999 CblA-1 Strict ARO:0000032,ARO:3004129 cephalosporin,cephaloridine ARO:3000007,ARO:3000007 beta-lactam antibiotic,beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
23 HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 458 494 CAVL1ANXX170419:8:1306:4592:97549/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
24 HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 250 282 CAW05ANXX170413:4:1203:5542:4495/2 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
25 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 84 116 CAW05ANXX170413:3:1315:16625:39188/2 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
26 HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 599 630 CAW05ANXX170413:1:2305:16937:74810/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
27 HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 313 345 CAW05ANXX170413:4:1203:5542:4495/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
28 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 183 220 CAW05ANXX170413:2:1306:19124:85410/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
29 HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 135 183 CAVL1ANXX170419:8:2311:2698:4881/1 100.0 ARO:3000498 ErmF Strict ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 erythromycin,roxithromycin,lincomycin,telithromycin,clarithromycin,clindamycin,tylosin,spiramycin,azithromycin,dirithromycin,pristinamycin IA,quinupristin,virginiamycin M1,madumycin II,griseoviridin,dalfopristin,pristinamycin IB,virginiamycin S2,pristinamycin IC,vernamycin C,patricin A,patricin B,ostreogrycin B3,oleandomycin ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,lincosamide antibiotic,lincosamide antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
30 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 549 581 CAVL1ANXX170419:7:2101:11775:63407/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
31 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1066 1098 CAW05ANXX170413:3:2307:19659:86083/2 84.8 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
32 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 348 386 CAW05ANXX170413:4:2301:11928:92463/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
33 HSM7J4M8 TETW ABC18245|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ABC18245 deeparg 1.0.2 gene_presence_detected tetracycline 479 502 CAW05ANXX170413:2:1213:3511:19878/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
34 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 566 598 CAW05ANXX170413:1:1112:3902:85304/2 84.8 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
35 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 268 300 CAW05ANXX170413:1:1101:13426:8340/2 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
36 HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 216 252 CAVL1ANXX170419:7:1111:14132:96304/1 100.0 ARO:3003002 CfxA2 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
37 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 239 271 CAW05ANXX170413:1:1101:13426:8340/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
38 HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 506 560 CAW05ANXX170413:3:2116:6868:46858/1 96.4 ARO:3000190 tet(O) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
39 HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 46 95 CAW05ANXX170413:4:1115:19271:81085/1 98.0 ARO:3000498 ErmF Strict ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 erythromycin,roxithromycin,lincomycin,telithromycin,clarithromycin,clindamycin,tylosin,spiramycin,azithromycin,dirithromycin,pristinamycin IA,quinupristin,virginiamycin M1,madumycin II,griseoviridin,dalfopristin,pristinamycin IB,virginiamycin S2,pristinamycin IC,vernamycin C,patricin A,patricin B,ostreogrycin B3,oleandomycin ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,lincosamide antibiotic,lincosamide antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
40 HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 192 224 CAW05ANXX170413:1:1110:9955:90492/2 100.0 ARO:3003002 CfxA2 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
41 HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 225 257 CAW05ANXX170413:1:1110:9955:90492/1 100.0 ARO:3003002 CfxA2 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
42 HSM7J4M8 CLASS_A gi:511019447:ref:WP_016273783.1:|FEATURES|class_A|beta-lactam|class_A deeparg_db 1 gi:511019447:ref:WP_016273783.1: deeparg 1.0.2 gene_presence_detected beta-lactam 59 88 CAW05ANXX170413:1:2104:12338:89489/1 100.0 ARO:3002999 CblA-1 Strict ARO:0000032,ARO:3004129 cephalosporin,cephaloridine ARO:3000007,ARO:3000007 beta-lactam antibiotic,beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
43 HSM7J4M8 ERMF Q02607|FEATURES|ermF|MLS|ermF deeparg_db 1 Q02607 deeparg 1.0.2 gene_presence_detected MLS 115 148 CAW05ANXX170413:4:2316:15733:89046/1 100.0 ARO:3000498 ErmF Strict ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 erythromycin,roxithromycin,lincomycin,telithromycin,clarithromycin,clindamycin,tylosin,spiramycin,azithromycin,dirithromycin,pristinamycin IA,quinupristin,virginiamycin M1,madumycin II,griseoviridin,dalfopristin,pristinamycin IB,virginiamycin S2,pristinamycin IC,vernamycin C,patricin A,patricin B,ostreogrycin B3,oleandomycin ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,lincosamide antibiotic,lincosamide antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
44 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1011 1043 CAW05ANXX170413:2:2106:1304:36748/2 90.9 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
45 HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 1 32 CAVL1ANXX170419:7:2215:5172:88650/1 100.0 ARO:3000498 ErmF Strict ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 erythromycin,roxithromycin,lincomycin,telithromycin,clarithromycin,clindamycin,tylosin,spiramycin,azithromycin,dirithromycin,pristinamycin IA,quinupristin,virginiamycin M1,madumycin II,griseoviridin,dalfopristin,pristinamycin IB,virginiamycin S2,pristinamycin IC,vernamycin C,patricin A,patricin B,ostreogrycin B3,oleandomycin ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,lincosamide antibiotic,lincosamide antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
46 HSM7J4M8 TETW ABC18245|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ABC18245 deeparg 1.0.2 gene_presence_detected tetracycline 449 480 CAW05ANXX170413:2:2211:9373:48167/2 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
47 HSM7J4M8 TETW ABC18245|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ABC18245 deeparg 1.0.2 gene_presence_detected tetracycline 448 480 CAW05ANXX170413:2:2211:9373:48167/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
48 HSM7J4M8 KASUGAMYCIN_RESISTANCE_PROTEIN_KSGA A7FMC1|FEATURES|kasugamycin_resistance_protein_ksgA|aminoglycoside|kasugamycin_resistance_protein_ksgA deeparg_db 1 A7FMC1 deeparg 1.0.2 gene_presence_detected aminoglycoside 108 139 CAW05ANXX170413:1:2204:10841:3109/2 87.5 ARO:3003333 Escherichia coli 16S rRNA (rrsC) mutation conferring resistance to kasugamicin Manual ARO:3001296 kasugamycin ARO:0000016 aminoglycoside antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
49 HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 91 123 CAVL1ANXX170419:7:1302:11559:33404/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
50 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 458 488 CAW05ANXX170413:1:1205:4684:84705/2 83.9 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
51 HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 54 86 CAVL1ANXX170419:7:1302:11559:33404/2 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
52 HSM7J4M8 TETA(46) AET10444.1|FEATURES|tetA(46)|tetracycline|tetA(46) deeparg_db 1 AET10444.1 deeparg 1.0.2 gene_presence_detected tetracycline 161 199 CAW05ANXX170413:4:2107:18308:23682/1 100.0 ARO:3004032 tetA(46) Perfect ARO:0000051 tetracycline ARO:3000050 tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
53 HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 226 258 CAW05ANXX170413:2:1105:18339:28347/2 100.0 ARO:3003002 CfxA2 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
54 HSM7J4M8 BACA YP_002937728|FEATURES|bacA|bacitracin|bacA deeparg_db 1 YP_002937728 deeparg 1.0.2 gene_presence_detected bacitracin 121 153 CAVL1ANXX170419:8:2302:5224:83125/2 100.0 ARO:3002986 bacA Loose ARO:3000629,ARO:3000630,ARO:3000631 bacitracin A,bacitracin B,bacitracin F ARO:3000053,ARO:3000053,ARO:3000053 peptide antibiotic,peptide antibiotic,peptide antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
55 HSM7J4M8 BACA YP_002937728|FEATURES|bacA|bacitracin|bacA deeparg_db 1 YP_002937728 deeparg 1.0.2 gene_presence_detected bacitracin 165 197 CAVL1ANXX170419:8:2302:5224:83125/1 100.0 ARO:3002986 bacA Loose ARO:3000629,ARO:3000630,ARO:3000631 bacitracin A,bacitracin B,bacitracin F ARO:3000053,ARO:3000053,ARO:3000053 peptide antibiotic,peptide antibiotic,peptide antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
56 HSM7J4M8 VANU DQ212986.1.gene3.p01|FEATURES|vanU|glycopeptide|vanU deeparg_db 1 DQ212986.1.gene3.p01 deeparg 1.0.2 gene_presence_detected glycopeptide 1 48 CAW05ANXX170413:4:2101:9750:49063/1 81.2 ARO:3004253 vanU gene in vanG cluster Perfect ARO:0000028 vancomycin ARO:3000081 glycopeptide antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
57 HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 1 31 CAW05ANXX170413:2:2107:8039:8913/1 100.0 ARO:3000498 ErmF Strict ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 erythromycin,roxithromycin,lincomycin,telithromycin,clarithromycin,clindamycin,tylosin,spiramycin,azithromycin,dirithromycin,pristinamycin IA,quinupristin,virginiamycin M1,madumycin II,griseoviridin,dalfopristin,pristinamycin IB,virginiamycin S2,pristinamycin IC,vernamycin C,patricin A,patricin B,ostreogrycin B3,oleandomycin ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,lincosamide antibiotic,lincosamide antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
58 HSM7J4M8 PBP-1A YP_001292390|FEATURES|PBP-1A|beta-lactam|PBP-1A deeparg_db 1 YP_001292390 deeparg 1.0.2 gene_presence_detected beta-lactam 507 539 CAW05ANXX170413:4:1212:12020:16066/2 87.9 ARO:3000001 beta-lactamase Manual
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
59 HSM7J4M8 PBP-1A YP_001292390|FEATURES|PBP-1A|beta-lactam|PBP-1A deeparg_db 1 YP_001292390 deeparg 1.0.2 gene_presence_detected beta-lactam 554 586 CAW05ANXX170413:4:1212:12020:16066/1 93.9 ARO:3000001 beta-lactamase Manual
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
60 HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 91 123 CAW05ANXX170413:3:2205:7646:25632/1 97.0 ARO:3003002 CfxA2 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
61 HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 52 84 CAW05ANXX170413:3:2205:7646:25632/2 100.0 ARO:3003002 CfxA2 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
62 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 177 216 CAW05ANXX170413:2:1208:17315:52804/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
63 HSM7J4M8 BACA ZP_04528247|FEATURES|bacA|bacitracin|bacA deeparg_db 1 ZP_04528247 deeparg 1.0.2 gene_presence_detected bacitracin 5 66 CAW05ANXX170413:4:2216:5306:50848/1 80.6 ARO:3002986 bacA Loose ARO:3000629,ARO:3000630,ARO:3000631 bacitracin A,bacitracin B,bacitracin F ARO:3000053,ARO:3000053,ARO:3000053 peptide antibiotic,peptide antibiotic,peptide antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
64 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 768 808 CAW05ANXX170413:2:2112:12324:87930/1 85.4 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
65 HSM7J4M8 ERMG M15332.gene.p01|FEATURES|ermG|MLS|ermG deeparg_db 1 M15332.gene.p01 deeparg 1.0.2 gene_presence_detected MLS 39 74 CAW05ANXX170413:3:2105:17340:67174/1 100.0 ARO:3000522 ErmG Strict ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 erythromycin,roxithromycin,lincomycin,telithromycin,clarithromycin,clindamycin,tylosin,spiramycin,azithromycin,dirithromycin,pristinamycin IA,quinupristin,virginiamycin M1,madumycin II,griseoviridin,dalfopristin,pristinamycin IB,virginiamycin S2,pristinamycin IC,vernamycin C,patricin A,patricin B,ostreogrycin B3,oleandomycin ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,lincosamide antibiotic,lincosamide antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
66 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 348 380 CAW05ANXX170413:4:1112:7078:80745/2 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
67 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1035 1063 CAVL1ANXX170419:8:2213:17232:21560/1 89.7 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
68 HSM7J4M8 ERMB gi:494752321:ref:WP_007487729.1:|FEATURES|ermB|MLS|ermB deeparg_db 1 gi:494752321:ref:WP_007487729.1: deeparg 1.0.2 gene_presence_detected MLS 100 132 CAW05ANXX170413:4:2201:13207:98133/1 100.0 ARO:3000375 ErmB Strict ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 erythromycin,roxithromycin,lincomycin,telithromycin,clarithromycin,clindamycin,tylosin,spiramycin,azithromycin,dirithromycin,pristinamycin IA,quinupristin,virginiamycin M1,madumycin II,griseoviridin,dalfopristin,pristinamycin IB,virginiamycin S2,pristinamycin IC,vernamycin C,patricin A,patricin B,ostreogrycin B3,oleandomycin ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,lincosamide antibiotic,lincosamide antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
69 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 744 782 CAVL1ANXX170419:7:2201:7806:78313/1 82.1 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
70 HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 22 66 CAVL1ANXX170419:7:2109:18195:11451/1 95.6 ARO:3000190 tet(O) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
71 HSM7J4M8 LNUC AAY32951.1|FEATURES|lnuC|MLS|lnuC deeparg_db 1 AAY32951.1 deeparg 1.0.2 gene_presence_detected MLS 77 109 CAW05ANXX170413:4:2314:4602:75128/2 100.0 ARO:3002837 lnuC Perfect ARO:0000046 lincomycin ARO:0000017 lincosamide antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
72 HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 46 78 CAW05ANXX170413:3:1201:14144:58887/2 97.0 ARO:3000190 tet(O) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
73 HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 79 111 CAW05ANXX170413:3:1201:14144:58887/1 100.0 ARO:3000190 tet(O) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
74 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 432 477 CAVL1ANXX170419:8:2306:18869:92753/1 91.3 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
75 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1033 1065 CAW05ANXX170413:3:2110:20339:63933/2 84.8 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
76 HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 190 222 CAW05ANXX170413:2:1303:5753:29418/1 100.0 ARO:3003002 CfxA2 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
77 HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 257 289 CAW05ANXX170413:2:1303:5753:29418/2 100.0 ARO:3003002 CfxA2 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
78 HSM7J4M8 TETW CAO78565|FEATURES|tetW|tetracycline|tetW deeparg_db 1 CAO78565 deeparg 1.0.2 gene_presence_detected tetracycline 398 450 CAW05ANXX170413:1:1211:13666:30369/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
79 HSM7J4M8 KASUGAMYCIN_RESISTANCE_PROTEIN_KSGA A7FMC1|FEATURES|kasugamycin_resistance_protein_ksgA|aminoglycoside|kasugamycin_resistance_protein_ksgA deeparg_db 1 A7FMC1 deeparg 1.0.2 gene_presence_detected aminoglycoside 152 187 CAW05ANXX170413:2:1304:9650:95878/1 80.6 ARO:3003333 Escherichia coli 16S rRNA (rrsC) mutation conferring resistance to kasugamicin Manual ARO:3001296 kasugamycin ARO:0000016 aminoglycoside antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
80 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 768 800 CAVL1ANXX170419:7:2204:4178:18230/2 87.9 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
81 HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 349 381 CAW05ANXX170413:3:1314:11295:28913/2 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
82 HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 315 347 CAW05ANXX170413:3:1314:11295:28913/1 100.0 ARO:3000194 tet(W) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
83 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 150 189 CAW05ANXX170413:3:2205:5211:23750/1 97.5 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
84 HSM7J4M8 TET32 ABV82118|FEATURES|tet32|tetracycline|tet32 deeparg_db 1 ABV82118 deeparg 1.0.2 gene_presence_detected tetracycline 133 165 CAVL1ANXX170419:7:1215:13452:55459/1 100.0 ARO:3000196 tet(32) Perfect ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
85 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 109 150 CAW05ANXX170413:1:1207:3793:26741/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
86 HSM7J4M8 UGD AAC75089.1|FEATURES|ugd|peptide|ugd deeparg_db 1 AAC75089.1 deeparg 1.0.2 gene_presence_detected peptide 230 262 CAW05ANXX170413:4:2307:19282:72087/2 90.9 ARO:3003577 ugd Perfect ARO:3000454 polymyxin B ARO:3000053 peptide antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
87 HSM7J4M8 ERMF Q02607|FEATURES|ermF|MLS|ermF deeparg_db 1 Q02607 deeparg 1.0.2 gene_presence_detected MLS 179 235 CAW05ANXX170413:4:2209:12378:13125/1 100.0 ARO:3000498 ErmF Strict ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 erythromycin,roxithromycin,lincomycin,telithromycin,clarithromycin,clindamycin,tylosin,spiramycin,azithromycin,dirithromycin,pristinamycin IA,quinupristin,virginiamycin M1,madumycin II,griseoviridin,dalfopristin,pristinamycin IB,virginiamycin S2,pristinamycin IC,vernamycin C,patricin A,patricin B,ostreogrycin B3,oleandomycin ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,macrolide antibiotic,lincosamide antibiotic,lincosamide antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic,streptogramin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
88 HSM7J4M8 CFXA2 AY769933.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AY769933.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 145 174 CAW05ANXX170413:4:1109:11895:18811/1 100.0 ARO:3003005 CfxA4 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
89 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 432 463 CAVL1ANXX170419:7:1104:3594:54825/2 87.5 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
90 HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 154 202 CAW05ANXX170413:4:2307:3068:73276/1 98.0 ARO:3003002 CfxA2 Perfect ARO:3009106 second-generation cephalosporin ARO:3000007 beta-lactam antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
91 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 143 175 CAW05ANXX170413:4:1214:2819:98466/1 84.8 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
92 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1066 1101 CAW05ANXX170413:1:1102:10487:59991/1 80.6 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
93 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 578 610 CAVL1ANXX170419:8:1106:3865:26466/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
94 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 578 610 CAVL1ANXX170419:8:1106:3865:26466/2 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
95 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 97 129 CAW05ANXX170413:3:1307:3879:36407/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
96 HSM7J4M8 TETQ Z21523.gene.p01|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 Z21523.gene.p01 deeparg 1.0.2 gene_presence_detected tetracycline 21 53 CAW05ANXX170413:3:1307:3879:36407/2 100.0 ARO:3000191 tet(Q) Perfect ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
97 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1017 1049 CAW05ANXX170413:4:2210:5154:42720/1 93.9 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
98 HSM7J4M8 TETQ ZP_04557016|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 ZP_04557016 deeparg 1.0.2 gene_presence_detected tetracycline 245 275 CAW05ANXX170413:4:2109:16067:23574/1 96.8 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
99 HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 547 579 CAVL1ANXX170419:8:1310:19520:23144/1 100.0 ARO:3000191 tet(Q) Strict ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
100 HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 786 817 CAW05ANXX170413:2:2307:7561:79956/1 96.9 ARO:3000501 rpoB2 Perfect ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 rifampin,rifaximin,rifabutin,rifapentine ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic,rifamycin antibiotic
d8e95a03321a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit 4de98d11ef4e46d92c545f665499be8fd714bac5
iuc
parents: 0
diff changeset
101 HSM7J4M8 TETQ Z21523.gene.p01|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 Z21523.gene.p01 deeparg 1.0.2 gene_presence_detected tetracycline 489 521 CAW05ANXX170413:3:2104:12736:98854/2 100.0 ARO:3000191 tet(Q) Perfect ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 tetracycline,doxycycline,minocycline,chlortetracycline,demeclocycline,oxytetracycline ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic,tetracycline antibiotic