annotate test-data/protein_domains.gff3 @ 0:2d4e3aff9dc7 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit b12158e6cc9b1b2bd6e7522dfc183e9055575823

9	pfam	protein_domain	33502	33541	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	33992	34063	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	35324	35381	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	37391	37409	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	37479	37553	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	38833	38931	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	41390	41413	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	41489	41494	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	43744	43846	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	44647	44729	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	47496	47541	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	51664	51812	0	+	.	Name=KH domain;color=#808080;gene_id=ENSG00000107164;gene_name=FUBP3;protein_domain_id=PF00013
9	pfam	protein_domain	102331	102396	0	+	.	Name=Zinc finger%2C C2H2 type;color=#80FF00;gene_id=ENSG00000130711;gene_name=PRDM12;protein_domain_id=PF00096
9	pfam	protein_domain	102412	102480	0	+	.	Name=C2H2-type zinc finger;color=#80FF80;gene_id=ENSG00000130711;gene_name=PRDM12;protein_domain_id=PF13894
9	pfam	protein_domain	114903	114949	0	+	.	Name=Exosome complex exonuclease RRP4 N-terminal region;color=#FF0000;gene_id=ENSG00000130713;gene_name=EXOSC2;protein_domain_id=PF14382
9	pfam	protein_domain	116528	116596	0	+	.	Name=Exosome complex exonuclease RRP4 N-terminal region;color=#FF0000;gene_id=ENSG00000130713;gene_name=EXOSC2;protein_domain_id=PF14382
9	pfam	protein_domain	121951	121971	0	+	.	Name=KH domain;color=#000080;gene_id=ENSG00000130713;gene_name=EXOSC2;protein_domain_id=PF15985
9	pfam	protein_domain	123179	123300	0	+	.	Name=KH domain;color=#000080;gene_id=ENSG00000130713;gene_name=EXOSC2;protein_domain_id=PF15985
9	pfam	protein_domain	275219	275273	0	+	.	Name=SH3 domain;color=#FF0000;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00018
9	pfam	protein_domain	275837	275922	0	+	.	Name=SH3 domain;color=#FF0000;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00018
9	pfam	protein_domain	275962	276132	0	+	.	Name=SH2 domain;color=#80FFFF;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00017
9	pfam	protein_domain	283799	283855	0	+	.	Name=SH2 domain;color=#80FFFF;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00017
9	pfam	protein_domain	283973	284071	0	+	.	Name=Protein kinase domain;color=#80FF00;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00069
9	pfam	protein_domain	293165	293249	0	+	.	Name=Protein kinase domain;color=#80FF00;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00069
9	pfam	protein_domain	293896	294073	0	+	.	Name=Protein kinase domain;color=#80FF00;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00069
9	pfam	protein_domain	295904	296088	0	+	.	Name=Protein kinase domain;color=#80FF00;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00069
9	pfam	protein_domain	299451	299603	0	+	.	Name=Protein kinase domain;color=#80FF00;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00069
9	pfam	protein_domain	301104	301156	0	+	.	Name=Protein kinase domain;color=#80FF00;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF00069
9	pfam	protein_domain	306405	306716	0	+	.	Name=F-actin binding;color=#800000;gene_id=ENSG00000097007;gene_name=ABL1;protein_domain_id=PF08919
9	pfam	protein_domain	314470	314862	0	-	.	Name=Orexigenic neuropeptide Qrfp/P518 ;color=#808000;gene_id=ENSG00000188710;gene_name=QRFP;protein_domain_id=PF11109
9	pfam	protein_domain	325106	325108	0	-	.	Name=Fibrinogen beta and gamma chains%2C C-terminal globular domain;color=#808000;gene_id=ENSG00000130720;gene_name=FIBCD1;protein_domain_id=PF00147
9	pfam	protein_domain	325118	325359	0	-	.	Name=Fibrinogen beta and gamma chains%2C C-terminal globular domain;color=#808000;gene_id=ENSG00000130720;gene_name=FIBCD1;protein_domain_id=PF00147
9	pfam	protein_domain	326270	326449	0	-	.	Name=Fibrinogen beta and gamma chains%2C C-terminal globular domain;color=#808000;gene_id=ENSG00000130720;gene_name=FIBCD1;protein_domain_id=PF00147
9	pfam	protein_domain	332828	332924	0	-	.	Name=Fibrinogen beta and gamma chains%2C C-terminal globular domain;color=#808000;gene_id=ENSG00000130720;gene_name=FIBCD1;protein_domain_id=PF00147
9	pfam	protein_domain	344780	344908	0	-	.	Name=Fibrinogen beta and gamma chains%2C C-terminal globular domain;color=#808000;gene_id=ENSG00000130720;gene_name=FIBCD1;protein_domain_id=PF00147
9	pfam	protein_domain	430353	430623	0	+	.	Name=Laminin N-terminal (Domain VI);color=#000080;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00055
9	pfam	protein_domain	447321	447625	0	+	.	Name=Laminin N-terminal (Domain VI);color=#000080;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00055
9	pfam	protein_domain	453081	453209	0	+	.	Name=Laminin N-terminal (Domain VI);color=#000080;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00055
9	pfam	protein_domain	457203	457334	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	459902	460054	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	460070	460088	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	460167	460282	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	462677	462771	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	466560	466608	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	470157	470166	0	+	.	Name=Laminin B (Domain IV);color=#FFFF80;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00052
9	pfam	protein_domain	473527	473719	0	+	.	Name=Laminin B (Domain IV);color=#FFFF80;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00052
9	pfam	protein_domain	473886	474001	0	+	.	Name=Laminin B (Domain IV);color=#FFFF80;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00052
9	pfam	protein_domain	477965	478038	0	+	.	Name=Laminin B (Domain IV);color=#FFFF80;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00052
9	pfam	protein_domain	478042	478107	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	478144	478183	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	482071	482168	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	482175	482259	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	487996	488060	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	488076	488222	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	489116	489262	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	489945	490067	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
9	pfam	protein_domain	490710	490856	0	+	.	Name=Laminin EGF domain;color=#FFFFFF;gene_id=ENSG00000050555;gene_name=LAMC3;protein_domain_id=PF00053
22	pfam	protein_domain	2420	2524	0	-	.	Name=Armadillo/beta-catenin-like repeat;color=#000080;gene_id=ENSG00000100218;gene_name=RSPH14;protein_domain_id=PF00514
22	pfam	protein_domain	36321	37004	0	+	.	Name=G-protein alpha subunit;color=#80FFFF;gene_id=ENSG00000128266;gene_name=GNAZ;protein_domain_id=PF00503
22	pfam	protein_domain	63673	63981	0	+	.	Name=G-protein alpha subunit;color=#80FFFF;gene_id=ENSG00000128266;gene_name=GNAZ;protein_domain_id=PF00503
22	pfam	protein_domain	90736	90740	0	+	.	Name=Ras family;color=#80FFFF;gene_id=ENSG00000100228;gene_name=RAB36;protein_domain_id=PF00071
22	pfam	protein_domain	93060	93112	0	+	.	Name=Ras family;color=#80FFFF;gene_id=ENSG00000100228;gene_name=RAB36;protein_domain_id=PF00071
22	pfam	protein_domain	93619	93720	0	+	.	Name=Ras family;color=#80FFFF;gene_id=ENSG00000100228;gene_name=RAB36;protein_domain_id=PF00071
22	pfam	protein_domain	96554	96622	0	+	.	Name=Ras family;color=#80FFFF;gene_id=ENSG00000100228;gene_name=RAB36;protein_domain_id=PF00071
22	pfam	protein_domain	98578	98629	0	+	.	Name=Ras family;color=#80FFFF;gene_id=ENSG00000100228;gene_name=RAB36;protein_domain_id=PF00071
22	pfam	protein_domain	99484	99565	0	+	.	Name=Ras family;color=#80FFFF;gene_id=ENSG00000100228;gene_name=RAB36;protein_domain_id=PF00071
22	pfam	protein_domain	99749	99839	0	+	.	Name=Ras family;color=#80FFFF;gene_id=ENSG00000100228;gene_name=RAB36;protein_domain_id=PF00071
22	pfam	protein_domain	101465	101502	0	+	.	Name=Ras family;color=#80FFFF;gene_id=ENSG00000100228;gene_name=RAB36;protein_domain_id=PF00071
22	pfam	protein_domain	121553	121771	0	+	.	Name=Bcr-Abl oncoprotein oligomerisation domain;color=#FF0000;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF09036
22	pfam	protein_domain	201581	201640	0	+	.	Name=RhoGEF domain;color=#000000;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00621
22	pfam	protein_domain	201941	202126	0	+	.	Name=RhoGEF domain;color=#000000;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00621
22	pfam	protein_domain	208994	209101	0	+	.	Name=RhoGEF domain;color=#000000;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00621
22	pfam	protein_domain	212118	212178	0	+	.	Name=RhoGEF domain;color=#000000;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00621
22	pfam	protein_domain	213667	213719	0	+	.	Name=RhoGEF domain;color=#000000;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00621
22	pfam	protein_domain	214220	214312	0	+	.	Name=RhoGEF domain;color=#000000;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00621
22	pfam	protein_domain	230954	230999	0	+	.	Name=C2 domain;color=#00FF00;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00168
22	pfam	protein_domain	233127	233224	0	+	.	Name=C2 domain;color=#00FF00;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00168
22	pfam	protein_domain	235610	235741	0	+	.	Name=C2 domain;color=#00FF00;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00168
22	pfam	protein_domain	250010	250018	0	+	.	Name=C2 domain;color=#00FF00;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00168
22	pfam	protein_domain	252302	252422	0	+	.	Name=RhoGAP domain;color=#FFFFFF;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00620
22	pfam	protein_domain	253473	253607	0	+	.	Name=RhoGAP domain;color=#FFFFFF;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00620
22	pfam	protein_domain	254554	254659	0	+	.	Name=RhoGAP domain;color=#FFFFFF;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00620
22	pfam	protein_domain	255138	255228	0	+	.	Name=RhoGAP domain;color=#FFFFFF;gene_id=ENSG00000186716;gene_name=BCR;protein_domain_id=PF00620