Mercurial > repos > iuc > arriba_draw_fusions
changeset 7:24271361028f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 2d69e621036bf155e02189d4a9a8aa9ee24536e0
| author | iuc |
|---|---|
| date | Fri, 04 Apr 2025 10:38:15 +0000 |
| parents | 7acb00fc980a |
| children | |
| files | arriba_draw_fusions.xml macros.xml |
| diffstat | 2 files changed, 11 insertions(+), 7 deletions(-) [+] |
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--- a/arriba_draw_fusions.xml Wed Sep 25 15:30:11 2024 +0000 +++ b/arriba_draw_fusions.xml Fri Apr 04 10:38:15 2025 +0000 @@ -89,7 +89,7 @@ **INPUTS** -See: https://arriba.readthedocs.io/en/latest/command-line-options/#draw_fusionsr +See: https://github.com/suhrig/arriba/wiki/07-Command-line-options#draw_fusionsr - Fusions @@ -122,12 +122,12 @@ **OPTIONS** - See: https://arriba.readthedocs.io/en/latest/command-line-options/#draw_fusionsr + See: https://github.com/suhrig/arriba/wiki/07-Command-line-options#draw_fusionsr **OUTPUTS** -See: https://arriba.readthedocs.io/en/latest/visualization/ +See: https://github.com/suhrig/arriba/wiki/06-Visualization - fusions.pdf @@ -140,8 +140,8 @@ -.. _Arriba_Draw_Fusions: https://arriba.readthedocs.io/en/latest/visualization/ -.. _Arriba: https://arriba.readthedocs.io/en/latest/ +.. _Arriba_Draw_Fusions: https://github.com/suhrig/arriba/wiki/06-Visualization +.. _Arriba: https://github.com/suhrig/arriba/wiki/01-Home ]]></help> <expand macro="citations" />
--- a/macros.xml Wed Sep 25 15:30:11 2024 +0000 +++ b/macros.xml Fri Apr 04 10:38:15 2025 +0000 @@ -1,6 +1,6 @@ <macros> - <token name="@TOOL_VERSION@">2.4.0</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@TOOL_VERSION@">2.5.0</token> + <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">arriba</requirement> @@ -238,6 +238,7 @@ </help> <validator type="regex" message="">^\d+(,\d+)?$</validator> </param> + <param argument="--plotPanels" type="boolean" label="Plot panels" truevalue="TRUE" falsevalue="FALSE" help="The output will contain a panel for each fusion partner"/> </section> </xml> <token name="@DRAW_FUSIONS@"> @@ -301,5 +302,8 @@ #if str($visualization.options.fontSize) --fontSize=$visualization.options.fontSize #end if + #if $visualization.options.plotPanels + --plotPanels=$visualization.options.plotPanels + #end if </token> </macros>