# HG changeset patch
# User iuc
# Date 1743763086 0
# Node ID 6d1f577b3e479047a1fc686f2a038a211d530f93
# Parent  7a5a2d28c539ff36a967bd8f476ec26966bb773c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 2d69e621036bf155e02189d4a9a8aa9ee24536e0

diff -r 7a5a2d28c539 -r 6d1f577b3e47 arriba_get_filters.xml
--- a/arriba_get_filters.xml	Wed Sep 25 15:30:03 2024 +0000
+++ b/arriba_get_filters.xml	Fri Apr 04 10:38:06 2025 +0000
@@ -65,8 +65,8 @@
   - cytobands
 
 
-.. _Arriba: https://arriba.readthedocs.io/en/latest/
-.. _input_files: https://arriba.readthedocs.io/en/latest/input-files/
+.. _Arriba: https://github.com/suhrig/arriba/wiki/01-Home
+.. _input_files: https://github.com/suhrig/arriba/wiki/04-Input-files
 
 ]]></help>
     <expand macro="citations" />
diff -r 7a5a2d28c539 -r 6d1f577b3e47 macros.xml
--- a/macros.xml	Wed Sep 25 15:30:03 2024 +0000
+++ b/macros.xml	Fri Apr 04 10:38:06 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.4.0</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@TOOL_VERSION@">2.5.0</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <xml name="requirements">
         <requirements>
         <requirement type="package" version="@TOOL_VERSION@">arriba</requirement>
@@ -238,6 +238,7 @@
                         </help>
                         <validator type="regex" message="">^\d+(,\d+)?$</validator>
                     </param>
+                    <param argument="--plotPanels" type="boolean" label="Plot panels" truevalue="TRUE" falsevalue="FALSE" help="The output will contain a panel for each fusion partner"/>
                 </section>
     </xml>
     <token name="@DRAW_FUSIONS@">
@@ -301,5 +302,8 @@
     #if str($visualization.options.fontSize)
         --fontSize=$visualization.options.fontSize
     #end if
+    #if $visualization.options.plotPanels
+        --plotPanels=$visualization.options.plotPanels
+    #end if
 </token>
 </macros>