Mercurial > repos > iuc > art
comparison art_454.xml @ 3:bb7e0ccc0029 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 4f3b019991c8a322870d1130a7c0a34d5c09758f
author | iuc |
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date | Tue, 28 Jun 2016 11:32:19 -0400 |
parents | a12ce5668966 |
children |
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2:7a12314c5b64 | 3:bb7e0ccc0029 |
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108 <test> | 108 <test> |
109 <param name="rndSeed" value="42" /> | 109 <param name="rndSeed" value="42" /> |
110 <param name="input_seq_file" value="input.fa" /> | 110 <param name="input_seq_file" value="input.fa" /> |
111 <param name="fold_coverage" value="20" /> | 111 <param name="fold_coverage" value="20" /> |
112 <param name="choice" value="single_end" /> | 112 <param name="choice" value="single_end" /> |
113 <output name="output_fq1_single" file="art.454.01.fq" /> | 113 <output name="output_fq1_single" file="art.454.01.fq" compare="sim_size" delta="5000" /> |
114 </test> | 114 </test> |
115 <test> | 115 <test> |
116 <param name="rndSeed" value="42" /> | 116 <param name="rndSeed" value="42" /> |
117 <param name="input_seq_file" value="input.fa" /> | 117 <param name="input_seq_file" value="input.fa" /> |
118 <param name="fold_coverage" value="20" /> | 118 <param name="fold_coverage" value="20" /> |
119 <param name="choice" value="single_end" /> | 119 <param name="choice" value="single_end" /> |
120 <param name="sam" value="True" /> | 120 <param name="sam" value="True" /> |
121 <output name="output_fq1_single" file="art.454.01.fq" /> | 121 <output name="output_fq1_single" file="art.454.01.fq" compare="sim_size" delta="5000" /> |
122 <output name="output_sam" file="art.454.01.sam" lines_diff="2"/> | 122 <output name="output_sam" file="art.454.01.sam" compare="sim_size" delta="5000"/> |
123 </test> | 123 </test> |
124 <!-- Paired End tests --> | 124 <!-- Paired End tests --> |
125 <test> | 125 <test> |
126 <param name="rndSeed" value="42" /> | 126 <param name="rndSeed" value="42" /> |
127 <param name="input_seq_file" value="input.fa" /> | 127 <param name="input_seq_file" value="input.fa" /> |
128 <param name="fold_coverage" value="20" /> | 128 <param name="fold_coverage" value="20" /> |
129 <param name="choice" value="paired_end" /> | 129 <param name="choice" value="paired_end" /> |
130 <param name="fragment_size" value="105" /> | 130 <param name="fragment_size" value="105" /> |
131 <param name="fragment_sd" value="5" /> | 131 <param name="fragment_sd" value="5" /> |
132 <param name="sam" value="True" /> | 132 <param name="sam" value="True" /> |
133 <output name="output_fq1_paired" file="art.454.021.fq" /> | 133 <output name="output_fq1_paired" file="art.454.021.fq" compare="sim_size" delta="5000" /> |
134 <output name="output_fq2_paired" file="art.454.022.fq" /> | 134 <output name="output_fq2_paired" file="art.454.022.fq" compare="sim_size" delta="5000" /> |
135 <output name="output_sam" file="art.454.02.sam" lines_diff="2"/> | 135 <output name="output_sam" file="art.454.02.sam" compare="sim_size" delta="5000"/> |
136 </test> | 136 </test> |
137 </tests> | 137 </tests> |
138 <help><![CDATA[ | 138 <help><![CDATA[ |
139 Art 454 Pyrosequencing Simulator | 139 Art 454 Pyrosequencing Simulator |
140 ================================ | 140 ================================ |