Mercurial > repos > iuc > art
comparison art_solid.xml @ 3:bb7e0ccc0029 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 4f3b019991c8a322870d1130a7c0a34d5c09758f
| author | iuc |
|---|---|
| date | Tue, 28 Jun 2016 11:32:19 -0400 |
| parents | a12ce5668966 |
| children | 531ff1d417b6 |
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| 2:7a12314c5b64 | 3:bb7e0ccc0029 |
|---|---|
| 121 <param name="LEN_READ" value="25" /> | 121 <param name="LEN_READ" value="25" /> |
| 122 <param name="fold_coverage" value="10" /> | 122 <param name="fold_coverage" value="10" /> |
| 123 <param name="choice" value="single_end" /> | 123 <param name="choice" value="single_end" /> |
| 124 <param name="sam" value="False" /> | 124 <param name="sam" value="False" /> |
| 125 | 125 |
| 126 <output name="output_fq1_single" file="art.solid.01.fq" /> | 126 <output name="output_fq1_single" file="art.solid.01.fq" compare="sim_size" delta="5000" /> |
| 127 </test> | 127 </test> |
| 128 <test> | 128 <test> |
| 129 <param name="rndSeed" value="42" /> | 129 <param name="rndSeed" value="42" /> |
| 130 <param name="input_seq_file" value="input.fa" /> | 130 <param name="input_seq_file" value="input.fa" /> |
| 131 <param name="fold_coverage" value="20" /> | 131 <param name="fold_coverage" value="20" /> |
| 134 <param name="LEN_READ_F5" value="50" /> | 134 <param name="LEN_READ_F5" value="50" /> |
| 135 <param name="fragment_size" value="75" /> | 135 <param name="fragment_size" value="75" /> |
| 136 <param name="fragment_sd" value="10" /> | 136 <param name="fragment_sd" value="10" /> |
| 137 <param name="sam" value="True" /> | 137 <param name="sam" value="True" /> |
| 138 | 138 |
| 139 <output name="output_fq1_paired" file="art.solid.02_F3.fq" /> | 139 <output name="output_fq1_paired" file="art.solid.02_F3.fq" compare="sim_size" delta="5000" /> |
| 140 <output name="output_fq2_paired" file="art.solid.02_F5.fq" /> | 140 <output name="output_fq2_paired" file="art.solid.02_F5.fq" compare="sim_size" delta="5000" /> |
| 141 <output name="output_sam" file="art.solid.02.sam" lines_diff="2"/> | 141 <output name="output_sam" file="art.solid.02.sam" compare="sim_size" delta="5000"/> |
| 142 </test> | 142 </test> |
| 143 </tests> | 143 </tests> |
| 144 <help><![CDATA[ | 144 <help><![CDATA[ |
| 145 Art SOLiD Simulator | 145 Art SOLiD Simulator |
| 146 =================== | 146 =================== |