# HG changeset patch
# User iuc
# Date 1434037866 14400
# Node ID b98d6fffd00b2cb29952912e131f997dd5cea0ae
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 2b8fe4bffea74c80e20d2d4d0c426cc1631fc05f
diff -r 000000000000 -r b98d6fffd00b art_454.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/art_454.xml Thu Jun 11 11:51:06 2015 -0400
@@ -0,0 +1,155 @@
+
+ simulates pyrosequencing data
+
+ macros.xml
+
+
+ -1:
+-r $rndSeed
+#end if
+
+#if $c
+-c $c
+#end if
+
+#if $generate.amplicon.use_amplicon == "amplicon_true":
+ #if $generate.choice == "single_end":
+ -A
+ #else:
+ -B
+ #end if
+#end if
+
+$input_seq_file
+output
+
+#if $generate.choice == "single_end":
+ $fold_coverage
+#else:
+ $fold_coverage
+ $generate.fragment_size
+ $generate.fragment_sd
+#end if
+
+#if $generate.amplicon.use_amplicon == "amplicon_true":
+ #if $generate.choice == "single_end":
+ $generate.amplicon.reads_per_amplicon
+ #else:
+ $generate.amplicon.read_pairs_per_amplicon
+ #end if
+#end if
+;
+]]>
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+ generate['choice'] == "single_end"
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+ generate['choice'] != "single_end"
+
+
+ generate['choice'] != "single_end"
+
+
+ sam
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+
+
+
+ aln and generate['choice'] == "single_end"
+
+
+
+ aln and generate['choice'] != "single_end"
+
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+ generate['choice'] != "single_end" and generate['amplicon']['use_amplicon'] == "amplicon_true"
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diff -r 000000000000 -r b98d6fffd00b art_illumina.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/art_illumina.xml Thu Jun 11 11:51:06 2015 -0400
@@ -0,0 +1,158 @@
+
+ simulates sequencing data
+
+ macros.xml
+
+
+ -1:
+ --rndSeed $rndSeed
+#end if
+
+--out output;
+]]>
+
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+ generate['choice'] == "single_end"
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+
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+ generate['choice'] != "single_end"
+
+
+ generate['choice'] != "single_end"
+
+
+ sam
+
+
+
+
+ aln and generate['choice'] == "single_end"
+
+
+
+
+ aln and generate['choice'] != "single_end"
+
+
+ aln and generate['choice'] != "single_end"
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diff -r 000000000000 -r b98d6fffd00b art_solid.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/art_solid.xml Thu Jun 11 11:51:06 2015 -0400
@@ -0,0 +1,161 @@
+
+ simulates SOLiD data
+
+ macros.xml
+
+
+ -1:
+ -r $rndSeed
+#end if
+
+#if $generate.amplicon.use_amplicon == "amplicon_true":
+ -A
+
+ #if $generate.choice == "single_end":
+ s
+ #else if $generate.choice == "paired_end":
+ p
+ #else:
+ m
+ #end if
+
+#end if
+
+$input_seq_file
+output
+
+#if $generate.choice == "single_end":
+ $generate.LEN_READ
+ $fold_coverage
+#else if $generate.choice == "paired_end":
+ $generate.LEN_READ_F3
+ $generate.LEN_READ_F5
+ $fold_coverage
+ $generate.fragment_size
+ $generate.fragment_sd
+#else:
+ $generate.LEN_READ
+ $fold_coverage
+ $generate.fragment_size
+ $generate.fragment_sd
+#end if
+
+#if $generate.amplicon.use_amplicon == "amplicon_true":
+ #if $generate.choice == "single_end":
+ $generate.amplicon.reads_per_amplicon
+ #else:
+ $generate.amplicon.read_pairs_per_amplicon
+ #end if
+#end if
+]]>
+
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+ generate['choice'] == "single_end"
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+ generate['choice'] == "paired_end"
+
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+ generate['choice'] == "paired_end"
+
+
+
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+ generate['choice'] == "mate_pair"
+
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+ generate['choice'] == "mate_pair"
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+ sam
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diff -r 000000000000 -r b98d6fffd00b macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Thu Jun 11 11:51:06 2015 -0400
@@ -0,0 +1,62 @@
+
+ 2014.11.03.0
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+ 10.1093/bioinformatics/btr708
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diff -r 000000000000 -r b98d6fffd00b test-data/art.454.01.fq
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/art.454.01.fq Thu Jun 11 11:51:06 2015 -0400
@@ -0,0 +1,488 @@
+@chr1-515-1
+TATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTG
++
+AD/<;FC99CD=I:C;;@IIIA9FCCC@@II;DC==?IHH7>>FFID8DDCCDDC..777BA3
+@chr1-1111-1
+CGATAAAGTTAGACAAAACCATGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAAAATAAAAATTTTACCGCTTCCTTCGATTTAATTCGTAAACAAGCCGATtCTTGGAACAATTTCTGGAAAGACGGTAAAGGCGTTATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAAC
++
+HA5DBBEG=AFH5I5555<?==DDAGDDE6EEF-CC7@?EAIFF:1--6HGBBB6611F14///3EEF@DDDBCDEEIH..I
+@chr1-1115-1
+CTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCaGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACT
++
+C***C33FAA;;;FFCI---55FDD<2DDD;;*AA?BBBHIC55FG...F/D8922,1CEAAD::::<,,,,,,>////////A5AGI33AFD::?-@IICFAII?CC1HHF5D--8888FF5E;;<111IF=6I0EEII>?CCH,,,AACII62???ICA@@H>GFIIA<BAA@::@@@/E??<<<4@=@=F7777>;7GIHHHFFF?F3=6660II4B?,,,--GG;F.HHHAF8FFEIEFEF=?;9=:;????7AD5--<4AA@>>>4D>CC69C00@@@ICI6=@DD?DFB=7FFFFG4EFF,,,,,,,,,,D48877/////FII0I33:C;==AB0=FFFIICFA
+@chr1-265-1
+CCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGT
++
+AA==7IFDE>>CAADFCC3.F>>06;;D18FDDFFFCHHI??FFFFII5IFFF>@=DDIIFFFEFFD==<==IAABFA>522222222220///////..AC3CDAADFCHHD?D..I7@::5AAI..IB@AA;;;;:BEACC=,,,E6CF>II::I
+@chr1-1112-1
+CGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTT
++
+6>AAAA99IDIFIAA?CI<=H-C<<7AFIIC<<=D??3CIII//55DI6FCCF<<>FHICBD??IIE7---944E:F:7FFI,0@C@,,,>>CF?????F88FF56E1D?H?88EE<7777GAFF32IID87777;??==
+@chr1-722-1
+GGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTC
++
+FFDDFCA3EEGHHBIC.:??AFFFF;83D>>>>4::GBG222,,AE000IIC,,HH<<.0C;?CC.==7EEEAAI7=CC///F17B@I@B@CC6:?FFF>>IG555;;/FF33;;CHFDGAAE,,C;;:B?5EECD--->IDCC3AAA:FFC?D?@;?DD(333I2DFDD.1317BDD55,???@FEF>ICC???IDI?FFCCCC:III===CEI::II50IIH?FFC522/7::2333?CDACCACC;CII;F5559CEE7FCCC?IIADGGG33IC>88==FE7FD1.:A?...AI=;;5EEFAAIIDHHHFF..6GD00-FFF?FFCDFC:====;;F;6555@5DDFFFAEF67@....,4FE1...=66=HIICCCC>73C7000AD11;I>CCCAAIIHII?CFIAF7B@@7??AAA5>F6AADD@:>>II4/:>>FDBBIAFFI2
+@chr1-391-1
+ACCATGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAATAAAAATTTTTACCGCTTCCTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGGCGTTATAACGCCAGCAGTCCACTTCGcTTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTAATTCGTAAACAAGCCGATACTT
++
+5IIIAIFD=CIC<<=9>HH>7BDDFE,,G2FF=HDFH;CC@?FFF?3EDD68EEDII6F3EFIIDDFFFED55536FF???I6DFFI77<>>7E:::DDAAADH333B??<;CIAHB?CC
+@chr1-49-1
+TGACGGCCATAAGGCTGCTTCTTGTTGTCGATAGAACTTCATGTGCCTGTAAAACGAACGGTAAAAATTTTTATTTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTaTTTtCGAATTAAATCGAAGTGGAC
++
+,>>>IA33A::D,,,,-,,,,,D*********7FICA66?DIDDDFFBA666AAF33///2G@I<>>I:7B@??CCC>ABB:II@@@66DICCCFFE<<;;IIBD>>I0,EAA;FFF?,>DDCCBBBFA?:5DCCICC7F6HHH13>I>>>CD29;FD/3FF72CIII22!,..!FDAADDAAAAAAAA@9FD;H
+@chr1-575-1
+CTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAGCGATAAAGTTAGACAAAACCATTTAGAATCAACAGGCCACAGGGCGATAAAGTTAGACAAAACCAGCGATAAAtTTAGACAAAACCAGCGTTATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCG
++
+;FBCDB32D@@333FFAA48A???AAA,<<3CDF;FFIIBBBDDHHH;GDDFFF<7BFFA....DD5;?CCCI66@ID=5550@>HEEEF6IIA:::@FDDAD0FIFFFG6B=HHHADDI9FECCCCCCA2EDEC>>>4<:6EF>C8I43A:EEF;113AAEE::F>>GGG@FII555GCA55BDD2FFEIE21288>=FBC784.@@EAAE
+@chr1-419-1
+TTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCAT
++
+IIAI<;;::HHHIDECCIIII:BFFE332//=???@1,,,,,,,,,F>9DDEEC:IFFDAAFFF86;
+@chr1-191-1
+CTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAAT
++
+FF4I4AEEDDDDD3>F::I,,,C@D:<<<<<9AA37I???::;3GGFFF>GGDDEEDI7:688F==3DDDIFI66;;=;;<4DFFFBAADDI@D111DDC==FIDAA77013:EDIIFF==F084DGCCF4==FFDDA:IIFFF466C?6DEE33IDHHH<IADDFF,,,@CEBBFFEE7FCCC,,,,,C
+@chr1-1120-1
+TAGACAAAACCATGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAATAAAAATTTTTACCGCTTCCTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGGCGTTATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAAGCGATAAAGTTAGACAAAACCATGAAACCAACATAAACGCTACACGCAGGACGCTTTTTC
++
+CF3AI....00F:7IIA//A@@ICFDD@DDDC:D9::IDC;F77????:5D-////555663DDAC@@AAEEF<4???DD44E6D774.DDDDD?A7>CFFHHH;8FFHHHAI===FAEEEEG;?FF...CFFF:1<=<<>DDCID???EEDDC7:FFFHDCA8F?ADCI===FIF.....I
+@chr1-588-1
+AAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCG
++
+::;B3D88E??7<>8AD;;A3AFGGG/>FFGIDDC...10113..D/////////IFAAAAAFIIIIBD1DDED799:IIHAADC;55F>.F.222:,,,IIA????===HEACCCAAI??F=4HHH33E;DDD?>3>=AAAA6;I7HD
+@chr1-398-1
+CGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAATAAAAATTTTTACCGCTTCCTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGGCGTTATAACGCCtGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAGCGATAAAGTTAGnCAAAACCATTTAGAATCAACAGGCCACAGGGCGATAAAGTTAGACAAAACCAGCGATAAAG
++
+DF,,IIA;FFF<=CIID=8?:,-------=////------FFF>>IIII88EE7=?FAAFF33-335IAAA00B<>@@CDBD44H3588;F6AAFFF?AIII.@@@DDA9@@F74456DD0AD2FI007HHH118?:::AA?IIABCC;=AF:--D7>FDDD:BIFFII,,,IH<::AIIIDDDE>111II7D?@@CC-FFDDAC5,8F=FFIEE:
+@chr1-661-1
+CTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAAGCGTCCTGCGTG
++
+IFFF;;7II..3B?FFFAFI,,-0044DIF@4<FF6?<<>A><3HHHCFBHH?@DDD7D6<>?D,CCF--D66IF3551D4DD00??CIEEIC>IEEEEEC?F6FF@I,A>89;5HD==7D7ADDFF,,,D1FAA...1@CIFDDA555I6CIA42221F
+@chr1-718-1
+ATAAAGTTAGACAAAAACCAGCGTTATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCcATACTTGGAACAATTTCTGGAAAGAaGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAGCGATAAAGTTAGACAAAACCATGAAACCAACATAAACGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTACTTGTGCCGAAGAAGCTGGAGTAACAGAA
++
+IIHHHC<<@AA:==;;;II:F1AFF=B33E8DB?A93EFDDIDFFF9FFFFIGFF@>IDDDDDDG330:5A>@@22FFDEEDDD@AHH233@A0=>IFFFFF9CI777A@FFFC;----FF7DD6ID:AAADDAA4.4888C:??FFF44FEE;DDDDF;D=DDDD3DDC:I:CCBB==?;FAAA44AB:F6<<ICEEEEFFB3334096=EAAIF8:@@DFDCCD=FD@AA?AAACIBF::9977DIG7FI006I<4C61I,,,,;;A>F@CCIADD8F:87I!IH?F:B:@@BDDFAA3A8?H::3344AFFCCC42DIIF??BBI@C?
+@chr1-35-1
+CGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAGCGATAAAGTTAGACAAAACCATGAAACCAACATAAACGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTACTTGTGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAATAAAAAATTTTTACCGCTTCGTTTTACAGGCACATGAAGTTCTACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAGCG
++
+;E66773II?GB:6?-7@@IIFE.==8==E1002227?C//A))EFFFID0003355CC<,,,DFFIA>DF>H655IIFF7DDCCCI<44444AGI11EDDDD?DI=AAA?A>>I9C7....GG5>D@@@GFCCIC.FFG;?77,IIDII>A:??@@FFD,4:77F2D=D5<<<<<992......555552FF33AAEE,FF==>FHDD?H////F;=II=GFIDF77BFFCI==DEG<=FFF44DDDI8E??IAA=CCD>IFIFF@@<8BAA555:6IIFHHIF;II6II:=:3EEE2FFFCCEEII:=BFD33;;CCI?AFFICC0HH@0;AA?BIFFAFA,2:F4?FFC5CCIIIIG8I:::,,33FDC===A??IAAAC=IAII::EE:
+@chr1-1455-1
+TGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTAT
++
+BF@@GGCCCAD@CC==;;ID;IAADFFFEIA?.1111FCC0G;211EED:AAADB-68FF;;D=I4
+@chr1-813-1
+CCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTnTTTCC
++
+559;7555::CA>>>11AFF;FH>>==??>6DDD--BF666EE:CC>>:58:DAF>><;;<>==FID..FF000AAF=@3++DDDACIAEE;=DECCC:<8GGCCFF=C:HCFFF33IDHHA0;22DD===DBI44DDFFID3?F377BF11I=GGI*FF@@@>55:8A===8:
+@chr1-53-1
+TGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAGCGATAAAGTTAGACAAAACCATGAAACCAACATAAACGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTACTTGTGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAATAAAAATTTTTACCGCTTCGTTTTACAGGCACATGAAGTTCTACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAGCGTGAAGAAACTAACCAGCG
++
+=CC<<6FF;;;7CFFAAA5,DDDI88?HHD<7AAA33FFEI<111>EE;FFGD?;BDDAAA?DA>B98CG22AAA@FF227,,,,CCF>>C4FFF-----A=I=AHIDDABC?IF;;<99:A:@@G7==CCDDDCIIAAFF6444?F:4,AIIAAAAICFFDDFE449FH:::DDCGDD@DCC?F??HD66IFFFI>>==7B,,,AADGG=?IIBFIAAFFC42C<<=DBAII??111A>CEE@I>:1188IIE@EE133333,,,,,;////////IG7F8EEHD7F6:999844;C:?///,??AF:??I?@AEEFF.DDBAC;;:AICCF
+@chr1-592-1
+TCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAGCGATAAAGTTAGACAAAACCATTTAGAATCAACAGGCCACAGGGCGATAAAGTTAGACAAAACCAGCGATAAAGTTAGACAAAACCAGCGTTATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAGCGATAAAGTTAGACAAAACCATGAAACCAACATAAACG
++
+5IIIDDDIIFF@8I..,FFF/A:?7CDDFFFFFFD;:655:E??,,,@FI88IFFFFF9A25---F..CHDF1111FF6:66EC<9CACCHEFF884?IIIIB3ID:==C;6C17D????==.I?86E...F@@FFF51111DD=0HFIA..FF7442AAAA@?FFFFD??;??H@F6IFFAAGEA99...IDFDCCCFAADD=FDE>>6F>666FFAAFC=ACCI677BB?FC5@))FF<<8<=@@@D8;;BBBD=633D8:76D6IFDDDDEGGDC6;....CCIB5886CC.0AAI???@=
+@chr1-1179-1
+GGTAAAAATTTTTTATTTTTTTTCTCACTTtTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCC
++
+33E;;;;;6666//F,,,,,,,,FHAEF?=996..FD6FECI6AA<@@IDD;FFFFFGGG5>CD;;4CCCCDDF1D88AAC<..3B33FHBE:FF-2224F...BB:@11177I66AADDF>AFDD=<,,,,IF?..33114CDDFF4???IDD7??HII:CIFF?B?-/--C?CCIE;;CEEEEE11555B,,,,,,,,,I<I7444473IB;426DFFIIB
+@chr1-1076-1
+TACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTTATTTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAAT
++
+CIIHFFDEHHH=F6DDDDAA:FF@FA5=IIBIIIFI11166>AABB=C8A3====;,,,,,H////////FF=FIDDHCDIICC2??FDFFIC-AB@CFF@2E4DFCC58<...,A:GG6?22?,,,,,77777>,,,,,,,,<1I9C
+@chr1-770-1
+ATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGtCTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAAT
++
+FII4IICC92C=E;?88EII=6?;;=:54?99DI:<1ED7:@BFFAEII?>FA??AB@@IGDFGHE000FCCACCF;AAGF:::?
+@chr1-976-1
+gTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACgGCTGGCGTTATAACGCCTTTACCGTCTTTCCAaAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAATTGTTCCAAGTATCGG
++
+.1111D11IE3666AAB2;;7BAEAA99DD@F>@FFFIIID;;;A>D,,FFAAAI:EFFGG?GF@@@AA7<?4,@I==5CCC?DI.0A<>IIF77,,<:6FFD7FF
+@chr1-444-1
+TAAAAATTTTTATTTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAAgCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAG
++
+A66666BBBBBF7773333116D:30FDADI.3FIF;=EIIIIA???CC1DC9ADDDC,FC9FF4C;=II67IBDD@@B8...DFFIF>I@GG-32?GE:66FFF6HHHII:44FFAAIEACCAAD,,=444;I?II@@FFF3F@FFIF?8EEIII.H.@E?IIIF:,,,,F5==AF>>D??:88.....?36======I@CI@AAIFD,2G@3EFCICDDBBBCFF9>=::B?D??11EEDC::II4>>>CAD@@IIFFF?DFIICIDD3-G-7?22I6FF47BBACEE444588I08CCC??23111FF@CC>>FFE57:@DD7CC-BBD?ADFF77FFFE<7FF66CC:I771****,,,,,@3333333383DDIBC@@F<<:FDBBFA>CCF;>III?8IFF----FAADCC7331:CA7D2EE==BEDD@I>>B47G:DD?205IE:::AA?C222II?FFAAFF3CH@C44FAA:@@@E:4AA..113F81DD?CD444=88D=A,IEHHC,F3333FIAAD?441.....;;77/F000000006IFA?A?BCFAA7I
+@chr1-235-1
+AACAGAAGTGAGAAAAAAAAATAAAAATTTTTACCGCTTCGTTTTACAGGCACATGAAGTTCTACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAGCGTGAAGAAACTAACCAGCGATAAAGTTAGACAAAACCATGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAATAAAAATTTTTACCGCTTCCTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAG
++
+IIIDD.0FBBI:ACFFHA6,,,,,II7D6HHHCIIE6686<>//---I56CF==IICC6FI443HI??6A?HHHA;;6GEF7>777IAIFF66666D?F77.,,,FAFACCG0001::2C111.AEE@GB699..I6:::;;HEEFFII8AFF:II5AA=FFF1A9,,99222ACB??AG..0CD...EEE;777));
+@chr1-312-1
+GTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAGCGTGAAGAAACTAACCAGCGATAAAGTTAGACAAACCATGCCGAAGAAGCTGGAGaAACAGAAGTGAGAAAAAAAATAAAAAATTTTTACCGCTTCCTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGGCGTTATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGAnACTTGGAACAA
++
+E:<<BBF888>DDD:6I?D9.@EEE@--<:C:44411/GA00I66C77:>I<<5I!IIBEI887ACAA00000000://////BBAAA3GGDHFFCCDDF@C///?@,,HD>F-----88???<++++++++D?7A6:8ICHIIDCHHFG7:99F++IIIFEFDC2266I34FIIIFFFAA:9?>DFFI:CDCAA?FFIFEFFFCC7F366DD89922IIIBD?C44CII2FFFH?I==II,,,FEFDDCGF9226DD8E4)A1???F:GHAADIDE?GBB>.....33555@55555551-?FH07FFAE>FFF8DIIE?@<<2DDC@?HC6;;D7BDD00II
+@chr1-313-1
+TAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAGCGTGAAGA
++
+:???7FFI??5733=FF--II5EE611DEFF...CGIII>FFA8IIIFFED
+@chr1-795-2
+CGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTA
++
+>AHIEE???FD=II=CC*IID7DAA@>4>D333AA=--DD227BFADFEIDDAHHH@HD17DD===G?BEE5IDDE@G;;E44D?AACD>>FG;A..CBCCIEFDFF5000;IIID>II@@@@=D3=??<,,,ID-=HHDF?F6;;;>>6==DFF>C3?HI466IA?8?CDA3DIAIICCCC/////7IE:DDFF>=FF;;FBC::IGCCGF-A?/////////C7555511111G66AI<E--B;,CCCEDFF2?3.--ACC.=C3II>@AA.1FFD550..IH77?F?CB4DDD
+@chr1-545-1
+TCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATaCTTGGAACAATTTCTGGAAAGACGGTAAAAGCGATAAAGTTAGACAAAACCATTTAGAATCAACAGGCCACAGGGCGATAAAGTTAGACAAAACCAGCGATAAAGTTAGACAAAACCAGCGTTATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAG
++
+CAD8111FGGC61F?F?CDDGGIICF@DDDFCGG942EFE66F88IAA?FFCCC45;23=4FII@;999C:?E=HHH?88FF=BCCCCII5..4ICFF<@??836699:AC..03ADEFFFABB:D>@CCCCFFFF1>BB66===AA555FDDDHHHI2F/////////FEEEEE777775FFF6<FF?DA233FDD1FFDAFAG..::220CC,,,C?FFA@@ED;7<>FFFAC;8DDDAFEHHF....ICDCD233F22=?=H880033?<2B@@BB67;HCBBHB7I6A7EFFC0664:FD99999.7;D::HFB@13FF56@;;H5IFFHFFABADH>11?-DIIA:=,,I86I@;AGGD?:000FFFF8@HDFF>8;C
+@chr1-1121-1
+CGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTT
++
+IFH<000EE0;DDD;;>EE44F:::::>FF6>:=FI10><<??677:AAECII>CDD;ADD21C:EDID000:FFIAD?FFFFDDCIFEE9FFDFFF73FFFC:==4:<98EG?3D000000000F55555CIIIFIII?F??::==7FFFFFDD..F8ADDDIAA:HHDDACIFFDD==F77//1AHAA;==>1>>=II0:FCCCFA
+@chr1-167-1
+AACATAAACGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTACTTGTGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAAATAAAAATTTTTACCGCTTCGTTTTACAGGCACATGAAGTTCTACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAGCGTGAAGAAACTAACCAGCGATAAAGTTAGACAAAACCATGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAAATAAAAATTTT
++
+22A@AAAAEIF9EF8D5CAIDDD?88DF@B,,,,HH>AB55C44GAADDF0/DAH34FG,DFFIIEF,,,,,,,,,D<7777?@@@
+@chr1-479-1
+CCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACgAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTT
++
+??BA4AAA;.5F:55CC*IDD=544:.:?IIIFCCC>F999EE3IFEE117<>=;CE@@FHAA2:::::;;;;2,,,,,,,,D@ADA??1AAGGEF2GG3?:>>;CC?IH?@;DD@DADDDDIII:::CC7I.....FD?H<>>IFII<<>CCCI>>IDDD:<@E>>DD..ADD>>>I9BB333>AI==A22,
+@chr1-620-1
+GGTAAAAATTTTTATTTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTA
++
+EEI44444EEEEEI155555511D:4@D6667:@@?;DDDD>>E9=CCDDFFF><...?5I:DEEEE,??C61)))FF9D???-.B0011FF:0:
+@chr1-272-1
+TCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATgGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTC
++
+?IFF=FFA...DHF22IIFFFDCD;;DDD7445GI=FF@@CCC?IC66.I::3B8AAAFFIEIIBF==ABEE000FAAAHDIIIGGAA33/HHAII@@AA:3AH4HH=77D...D673345IIIEIHFF??AADFG@G-----::=;;?,,,,,,,,,AA3D6==I-F::CF3**D6IIIDBBD,,5AFFF?==;807F:6F444:79??C==CC=CFFFACCI=F6EIIB>AF.3DDD==A7///ACFCCII77F3CDF>>?33IDDDCD6FFBBFFFD=IEEA...<>DGD..FF688F?D00DDAA68II:??===22200C,,,,,,,,,3AC-499,=F;;FAIAAAD;442::F@@FF9--DDDD;=DE::FCCCDA?DHA66?B6FHHH)>>IF=AFIIFEEF?D/,,::EC===7;3II66=>?D=F=BBB</AC--C?DB88CA:ADDC<>111;;FF=AIAAADEEBCCGEIA?II00@@6IIGGGFF88@@@F4=H@III...8EII11@;DCCDDDDAAACI7F3333HHE7AAA8FFC>AA=G88.=6GGF??55AG=HA55555555F00222,,,,,=88.C;CDD//FEIAACFFFF>C;553:AAF;;0F7EI77::IIDII222I4FFCCCD=A::?===778G,,DI=>CI?@F?DEDDFFF>FFF*7777DD<<6F7HHHA77CDE=DFCECC::IIDFFDDDFC33DDDC3F26-:55DDFCI
+@chr1-653-1
+TAAAGTTAGACAAAACCATTTAGAATCAACAGGCCACAGGGCGATAAAGTTAGACAAAACCAGCGATAAAGTTAGACAAAACCAGCGTTATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAGCGATAAAGTTAGACAAAACCATGAAACCAACATAAACGCTACACGCAGGAC
++
+0333@DDF?6D::5500FCCC>:EE.DCCIIFFAADDDCCC4DCB4447DD?F:=FFFFIIC.FGGH...:AA@IIF<;;;=7FD?CFF:C--DGHH:EE1>B@@IG26F3I===CC22CA=998F<;CFFAB-AF3388??C35FFF89DD8882DBII8FFI66F7D666//II7II///@:::FFFFIGFIIFFFFA??AAAFFCC8;;EEI@@D@@@@CFIHA110E??FF?3((((FFAIIB@;<=FF?.IDDDIBII<4AA?5<>>A9
+@chr1-324-2
+ATACTTGGAACAATTTCTGGAAAGACGGTAAGCGTGAAGAAACTAACCAGCGATAAAGTTAGACAAAACCATGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAAATAAAAATTTTTACCGCTTCCTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGGCGTTATAACGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAGCG
++
+CI33IDC<<9>?@?:IC7A.........E...../----IDBEI??::CC3CCDDDEE??=EI===F11999I?D>D63H???66FC337A33<6DD8=?DF744F?66?CIEEEFFHHIE3444@??FFFB@?37??II22;66555.@AAAAC:A.??C84:CC1DD???66CC6>C0004CC?AAD:?D9<>AA::DCC---CICCDDBF3I79I1111:B9
+@chr1-65-1
+TGGAAAGACGGTAACTTCGATTTAATTCGTAAACAAGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAAAGCGATAAAGTTAGACAAAACCATGAAACCAACATAAACGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTACTTGTGCCGAAGAAGCTGGAGTAACAGAAGTGAGAAAAAAAATAAAAATTTTTACCGCTTCGTTTTACAGGCACATGAAGTTCTACTTCG
++
+@8AFFFCCF,,BDDI>>CAIHHHBBBB1EE---7FF*DD:FFB:::HHII/,,000DAII000FIIIID:::::6HD?=333.99;?A?FFFFAAIDDGGG<<=