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comparison artic_minion.xml @ 2:376a706dda11 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 0762e327c7770179c9715b21edd0771250cfcd48"
author iuc
date Wed, 10 Jun 2020 18:36:36 -0400
parents 20165d3a8fb1
children 94020e19b46c
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1:20165d3a8fb1 2:376a706dda11
1 <tool id="artic_minion" name="ARTIC minion" version="1.1.2+galaxy0"> 1 <tool id="artic_minion" name="ARTIC minion" version="1.1.3+galaxy0">
2 <description>Build consensus sequence and call variants from amplicon-based nanopore sequence data</description> 2 <description>Build consensus sequence and call variants from amplicon-based nanopore sequence data</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.2">artic</requirement> 4 <requirement type="package" version="1.1.3">artic</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 mkdir -p 'scheme/name/version' && 7 mkdir -p 'scheme/name/version' &&
8 #if str( $primer_scheme_source.primer_scheme_source_selector ) == "tool_data_table": 8 #if str( $primer_scheme_source.primer_scheme_source_selector ) == "tool_data_table":
9 ln -s '${primer_scheme_source.primer_scheme_bedfile.fields.path}' 'scheme/name/version/name.scheme.bed' && 9 ln -s '${primer_scheme_source.primer_scheme_bedfile.fields.path}' 'scheme/name/version/name.scheme.bed' &&