Mercurial > repos > iuc > artic_minion

diff artic_minion.xml @ 8:6f52ebc01098 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 42a048391200da4c664650f7e7665c97ace584ee"
author iuc
date Mon, 07 Feb 2022 09:41:30 +0000
parents f5643712dca7
children
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--- a/artic_minion.xml	Mon Jan 31 10:12:30 2022 +0000
+++ b/artic_minion.xml	Mon Feb 07 09:41:30 2022 +0000
@@ -40,7 +40,7 @@
             "'"'${read_file.element_identifier}'"'"
         && bgzip -f '${read_file.element_identifier}.fail.vcf'
         ## remove enclosing single-quotes from header of output consensus fasta
-        && sed -i "1s/'${read_file.element_identifier}'/${read_file.element_identifier}/" ${read_file.element_identifier}.consensus.fasta
+        && sed -i "1s/'${read_file.element_identifier}'/${read_file.element_identifier}/" '${read_file.element_identifier}.consensus.fasta'
     ]]></command>
     <inputs>
         <param argument="--read-file" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Input Read File"/>