# HG changeset patch
# User iuc
# Date 1602265654 0
# Node ID a346730e5552cf35758f78549bb99d98e3105103
# Parent  94020e19b46c6b595048c26204c03fbfff7fad2a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 0c155c65c6499d62ce2ff020c1a904d6b959adb0"

diff -r 94020e19b46c -r a346730e5552 artic_minion.xml
--- a/artic_minion.xml	Tue Sep 29 20:20:01 2020 +0000
+++ b/artic_minion.xml	Fri Oct 09 17:47:34 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="artic_minion" name="ARTIC minion" version="1.1.3+galaxy1">
+<tool id="artic_minion" name="ARTIC minion" version="1.1.3+galaxy2">
     <description>Build consensus sequence and call variants from amplicon-based nanopore sequence data</description>
     <requirements>
         <requirement type="package" version="1.1.3">artic</requirement>
@@ -77,7 +77,7 @@
         <data name="alignment_report" format="tabular" from_work_dir="*.alignreport.txt" label="${tool.name} on ${on_string}: alignment report" />
         <data name="variants_merged_vcf" format="vcf_bgzip" from_work_dir="*.merged.vcf.gz" label="${tool.name} on ${on_string}: medaka variant calls" />
         <data name="variants_fail_vcf" format="vcf_bgzip" from_work_dir="*.fail.vcf.gz" label="${tool.name} on ${on_string}: variants fail" />
-        <data name="variants_pass_vcf" format="vcf" from_work_dir="*.pass.vcf" label="${tool.name} on ${on_string}: variants pass" />
+        <data name="variants_pass_vcf" format="vcf_bgzip" from_work_dir="*.pass.vcf.gz" label="${tool.name} on ${on_string}: variants pass" />
         <data name="consensus_fasta" format="fasta" from_work_dir="*.consensus.fasta" label="${tool.name} on ${on_string}: consensus sequence" />
         <data name="coverage_mask" format="tabular" from_work_dir="*.coverage_mask.txt" label="${tool.name} on ${on_string}: consensus coverage mask" />
         <data name="analysis_log" format="txt" from_work_dir="*.minion.log.txt" label="${tool.name} on ${on_string}: analysis log" />