annotate test-data/TEST_2/TEST_2.embl @ 3:865ece5ca178 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 9f516ce5c84b251b9041cd79129e5b5e1979a738

ID   NC_002127; SV 1; circular; DNA; ; PRO; 1330 BP.
XX
AC   NC_002127;
XX
DE   Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence
XX
OS   Escherichia coli o157:h7 Sakai
OC   .
XX
CC   Annotated with Bakta
CC   Software: v1.5.0
CC   Database: v4.0
CC   DOI: 10.1099/mgen.0.000685
CC   URL: github.com/oschwengers/bakta
CC   
CC   ##Genome Annotation Summary:##
CC   Annotation Date                :: 09/16/2022, 07:32:10
CC   Annotation Pipeline            :: Bakta
CC   Annotation Software version    ::  v1.5.0
CC   Annotation Database version    ::  v4.0
CC   CDSs                           ::     2
CC   tRNAs                          ::     0
CC   tmRNAs                         ::     0
CC   rRNAs                          ::     0
CC   ncRNAs                         ::     0
CC   regulatory ncRNAs              ::     0
CC   CRISPR Arrays                  ::     0
CC   oriCs/oriVs                    ::     0
CC   oriTs                          ::     0
CC   gaps                           ::     0
CC   pseudogenes                    ::     0
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1330
FT                   /mol_type="genomic DNA"
FT                   /organism="Escherichia coli o157:h7 Sakai"
FT                   /strain="Sakai"
FT                   /plasmid="pOSAK1"
FT   gene            413..736
FT                   /locus_tag="IHHALP_00005"
FT   CDS             413..736
FT                   /product="hypothetical protein"
FT                   /locus_tag="IHHALP_00005"
FT                   /protein_id="gnl|Bakta|IHHALP_00005"
FT                   /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
FT                   AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
FT                   MAD"
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /inference="ab initio prediction:Prodigal:2.6"
FT   gene            complement(join(971..1330,1..141))
FT                   /locus_tag="IHHALP_00010"
FT   CDS             complement(join(971..1330,1..141))
FT                   /product="hypothetical protein"
FT                   /locus_tag="IHHALP_00010"
FT                   /protein_id="gnl|Bakta|IHHALP_00010"
FT                   /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
FT                   EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
FT                   YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
FT                   IPI"
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /inference="ab initio prediction:Prodigal:2.6"
XX
SQ   Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
     ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc        60
     gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc       120
     agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg       180
     tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt       240
     tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt       300
     gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac       360
     cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa       420
     acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga       480
     agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt       540
     acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga       600
     agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga       660
     cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag       720
     gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt       780
     aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga       840
     tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc       900
     agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc       960
     tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa      1020
     ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat      1080
     cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat      1140
     taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa      1200
     aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc      1260
     tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg      1320
     cttctatttg                                                             1330
//