comparison test-data/TEST_1/TEST_1.log @ 0:1a27ad3d0cdf draft

planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
author iuc
date Thu, 01 Sep 2022 17:28:43 +0000
parents
children da5f1924bb2e
comparison
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-1:000000000000 0:1a27ad3d0cdf
1 parse genome sequences...
2 imported: 1
3 filtered & revised: 1
4 plasmids: 1
5
6 start annotation...
7 predict tRNAs...
8 found: 0
9 predict tmRNAs...
10 found: 0
11 predict rRNAs...
12 found: 0
13 predict ncRNAs...
14 found: 0
15 predict ncRNA regions...
16 found: 0
17 predict CRISPR arrays...
18 found: 0
19 predict & annotate CDSs...
20 predicted: 2
21 discarded spurious: 0
22 revised translational exceptions: 0
23 detected IPSs: 0
24 found PSCs: 0
25 found PSCCs: 0
26 lookup annotations...
27 conduct expert systems...
28 amrfinder: 0
29 protein sequences: 0
30 combine annotations and mark hypotheticals...
31 analyze hypothetical proteins: 2
32 detected Pfam hits: 0
33 calculated proteins statistics
34 revise special cases...
35 extract sORF...
36 potential: 22
37 discarded due to overlaps: 2
38 discarded spurious: 0
39 detected IPSs: 0
40 found PSCs: 0
41 lookup annotations...
42 filter and combine annotations...
43 filtered sORFs: 0
44 detect gaps...
45 found: 0
46 detect oriCs/oriVs...
47 found: 0
48 detect oriTs...
49 found: 0
50 apply feature overlap filters...
51 select features and create locus tags...
52 selected: 2
53
54 genome statistics:
55 Genome size: 1,330 bp
56 Contigs/replicons: 1
57 GC: 45.2 %
58 N50: 1,330
59 N ratio: 0.0 %
60 coding density: 62.0 %
61
62 annotation summary:
63 tRNAs: 0
64 tmRNAs: 0
65 rRNAs: 0
66 ncRNAs: 0
67 ncRNA regions: 0
68 CRISPR arrays: 0
69 CDSs: 2
70 hypotheticals: 2
71 signal peptides: 0
72 sORFs: 0
73 gaps: 0
74 oriCs/oriVs: 0
75 oriTs: 0
76
77 export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/2/working
78 human readable TSV...
79 GFF3...
80 INSDC GenBank & EMBL...
81 genome sequences...
82 feature nucleotide sequences...
83 translated CDS sequences...
84 hypothetical TSV...
85 translated hypothetical CDS sequences...
86 machine readable JSON...
87 genome and annotation summary...
88
89 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685
90 Annotation successfully finished in 0:01 [mm:ss].