Mercurial > repos > iuc > bakta
comparison test-data/TEST_3/TEST_3.log @ 0:1a27ad3d0cdf draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
| author | iuc |
|---|---|
| date | Thu, 01 Sep 2022 17:28:43 +0000 |
| parents | |
| children | da5f1924bb2e |
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| -1:000000000000 | 0:1a27ad3d0cdf |
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| 1 parse genome sequences... | |
| 2 imported: 1 | |
| 3 filtered & revised: 1 | |
| 4 plasmids: 1 | |
| 5 | |
| 6 start annotation... | |
| 7 skip tRNA prediction... | |
| 8 skip tmRNA prediction... | |
| 9 skip rRNA prediction... | |
| 10 skip ncRNA prediction... | |
| 11 skip ncRNA region prediction... | |
| 12 skip CRISPR array prediction... | |
| 13 skip CDS prediction... | |
| 14 skip sORF prediction... | |
| 15 skip gap annotation... | |
| 16 skip oriC/T annotation... | |
| 17 apply feature overlap filters... | |
| 18 select features and create locus tags... | |
| 19 selected: 0 | |
| 20 | |
| 21 genome statistics: | |
| 22 Genome size: 1,330 bp | |
| 23 Contigs/replicons: 1 | |
| 24 GC: 45.2 % | |
| 25 N50: 1,330 | |
| 26 N ratio: 0.0 % | |
| 27 coding density: 0.0 % | |
| 28 | |
| 29 annotation summary: | |
| 30 tRNAs: 0 | |
| 31 tmRNAs: 0 | |
| 32 rRNAs: 0 | |
| 33 ncRNAs: 0 | |
| 34 ncRNA regions: 0 | |
| 35 CRISPR arrays: 0 | |
| 36 CDSs: 0 | |
| 37 hypotheticals: 0 | |
| 38 signal peptides: 0 | |
| 39 sORFs: 0 | |
| 40 gaps: 0 | |
| 41 oriCs/oriVs: 0 | |
| 42 oriTs: 0 | |
| 43 | |
| 44 export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/6/working | |
| 45 human readable TSV... | |
| 46 GFF3... | |
| 47 INSDC GenBank & EMBL... | |
| 48 genome sequences... | |
| 49 feature nucleotide sequences... | |
| 50 translated CDS sequences... | |
| 51 machine readable JSON... | |
| 52 genome and annotation summary... | |
| 53 | |
| 54 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 | |
| 55 Annotation successfully finished in 0:00 [mm:ss]. |