comparison test-data/TEST_3/TEST_3.log @ 0:1a27ad3d0cdf draft

planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
author iuc
date Thu, 01 Sep 2022 17:28:43 +0000
parents
children da5f1924bb2e
comparison
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-1:000000000000 0:1a27ad3d0cdf
1 parse genome sequences...
2 imported: 1
3 filtered & revised: 1
4 plasmids: 1
5
6 start annotation...
7 skip tRNA prediction...
8 skip tmRNA prediction...
9 skip rRNA prediction...
10 skip ncRNA prediction...
11 skip ncRNA region prediction...
12 skip CRISPR array prediction...
13 skip CDS prediction...
14 skip sORF prediction...
15 skip gap annotation...
16 skip oriC/T annotation...
17 apply feature overlap filters...
18 select features and create locus tags...
19 selected: 0
20
21 genome statistics:
22 Genome size: 1,330 bp
23 Contigs/replicons: 1
24 GC: 45.2 %
25 N50: 1,330
26 N ratio: 0.0 %
27 coding density: 0.0 %
28
29 annotation summary:
30 tRNAs: 0
31 tmRNAs: 0
32 rRNAs: 0
33 ncRNAs: 0
34 ncRNA regions: 0
35 CRISPR arrays: 0
36 CDSs: 0
37 hypotheticals: 0
38 signal peptides: 0
39 sORFs: 0
40 gaps: 0
41 oriCs/oriVs: 0
42 oriTs: 0
43
44 export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/6/working
45 human readable TSV...
46 GFF3...
47 INSDC GenBank & EMBL...
48 genome sequences...
49 feature nucleotide sequences...
50 translated CDS sequences...
51 machine readable JSON...
52 genome and annotation summary...
53
54 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685
55 Annotation successfully finished in 0:00 [mm:ss].