Mercurial > repos > iuc > bakta
comparison test-data/TEST_1/TEST_1.json @ 6:92eee5f31117 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit fe9aabe924f278694d20b82169edacdb3e91eb49
author | iuc |
---|---|
date | Sun, 11 Feb 2024 00:56:12 +0000 |
parents | 3f0aa1b3e816 |
children |
comparison
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5:728dacaf08a9 | 6:92eee5f31117 |
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20 "type": "cds", | 20 "type": "cds", |
21 "contig": "contig_1", | 21 "contig": "contig_1", |
22 "start": 413, | 22 "start": 413, |
23 "stop": 736, | 23 "stop": 736, |
24 "strand": "+", | 24 "strand": "+", |
25 "frame": 2, | |
25 "gene": null, | 26 "gene": null, |
26 "product": "hypothetical protein", | 27 "product": "hypothetical protein", |
28 "db_xrefs": [], | |
29 "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG", | |
30 "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD", | |
31 "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e", | |
27 "start_type": "ATG", | 32 "start_type": "ATG", |
28 "rbs_motif": "GGAG/GAGG", | 33 "rbs_motif": "GGAG/GAGG", |
29 "db_xrefs": [], | |
30 "frame": 2, | |
31 "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD", | |
32 "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e", | |
33 "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG", | |
34 "hypothetical": true, | 34 "hypothetical": true, |
35 "genes": [], | 35 "genes": [], |
36 "seq_stats": { | 36 "seq_stats": { |
37 "molecular_weight": 12072.90819999999, | 37 "molecular_weight": 12072.90819999999, |
38 "isoelectric_point": 10.367886161804197 | 38 "isoelectric_point": 10.367886161804197 |
44 "type": "cds", | 44 "type": "cds", |
45 "contig": "contig_1", | 45 "contig": "contig_1", |
46 "start": 971, | 46 "start": 971, |
47 "stop": 141, | 47 "stop": 141, |
48 "strand": "-", | 48 "strand": "-", |
49 "frame": 1, | |
49 "gene": null, | 50 "gene": null, |
50 "product": "hypothetical protein", | 51 "product": "hypothetical protein", |
52 "db_xrefs": [], | |
53 "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA", | |
54 "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI", | |
55 "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584", | |
51 "start_type": "ATG", | 56 "start_type": "ATG", |
52 "rbs_motif": "AGGA/GGAG/GAGG", | 57 "rbs_motif": "AGGA/GGAG/GAGG", |
53 "db_xrefs": [], | |
54 "frame": 1, | |
55 "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI", | |
56 "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584", | |
57 "edge": true, | 58 "edge": true, |
58 "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA", | |
59 "hypothetical": true, | 59 "hypothetical": true, |
60 "genes": [], | 60 "genes": [], |
61 "seq_stats": { | 61 "seq_stats": { |
62 "molecular_weight": 18866.325799999995, | 62 "molecular_weight": 18866.325799999995, |
63 "isoelectric_point": 7.696590614318848 | 63 "isoelectric_point": 7.696590614318848 |
80 "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence", | 80 "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence", |
81 "name": "unnamed1" | 81 "name": "unnamed1" |
82 } | 82 } |
83 ], | 83 ], |
84 "run": { | 84 "run": { |
85 "start": "2023-06-19 09:30:05", | 85 "start": "2024-02-11 00:24:53", |
86 "end": "2023-06-19 09:30:06" | 86 "end": "2024-02-11 00:25:06" |
87 }, | 87 }, |
88 "version": { | 88 "version": { |
89 "bakta": "1.8.1", | 89 "bakta": "1.9.2", |
90 "db": { | 90 "db": { |
91 "version": "5.0", | 91 "version": "5.0", |
92 "type": "full" | 92 "type": "full" |
93 } | 93 } |
94 } | 94 } |