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comparison test-data/amrfinderplus-db/ReferenceGeneCatalog.txt @ 7:ba6990f72184 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e277883fca66013904bae930f04e7f3be5fcb1a2
author iuc
date Wed, 05 Jun 2024 14:22:02 +0000
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6:92eee5f31117 7:ba6990f72184
1 allele gene_family whitelisted_taxa product_name scope type subtype class subclass refseq_protein_accession refseq_nucleotide_accession curated_refseq_start genbank_protein_accession genbank_nucleotide_accession genbank_strand genbank_start genbank_stop refseq_strand refseq_start refseq_stop pubmed_reference blacklisted_taxa synonyms hierarchy_node db_version
2 aph(3')-IIIa aminoglycoside O-phosphotransferase APH(3')-IIIa core AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN WP_063841495.1 NG_047419.1 No AAK62562.1 AF330699.1 + 1562 2356 + 101 895 11600397 aph(3')-III aph(3')-IIIa 2024-05-02.2
3 aph(3')-IIIa aminoglycoside O-phosphotransferase APH(3')-IIIa core AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN WP_063841507.1 NG_047420.1 No CAD36021.1 AJ490186.1 + 1993 2787 + 101 895 aph(3')-III aph(3')-IIIa 2024-05-02.2
4 catA type A-7 chloramphenicol O-acetyltransferase core AMR AMR PHENICOL CHLORAMPHENICOL WP_063843211.1 NG_047572.1 No AAA26615.1 M64281.1 + 208 855 + 101 748 1713259 catA7 2024-05-02.2
5 erm(B) 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) core AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN CLINDAMYCIN/ERYTHROMYCIN/STREPTOGRAMIN B WP_063844601.1 NG_047793.1 No CAA57314.1 X81655.1 + 300 1037 + 101 838 7486927 erm(AM),erm(TE) erm(B) 2024-05-02.2
6 mupB mupirocin-resistant isoleucine--tRNA ligase MupB core AMR AMR MUPIROCIN MUPIROCIN WP_063854488.1 NG_048009.1 No AEY83581.1 JQ231224.1 + 91 3192 + 91 3192 22252810 mupB 2024-05-02.2
7 optrA ABC-F type ribosomal protection protein OptrA core AMR AMR PHENICOL/OXAZOLIDINONE FLORFENICOL/OXAZOLIDINONE WP_063854496.1 NG_048023.1 No AKA86814.1 KP399637.1 + 31477 33444 + 101 2068 25977397 optrA 2024-05-02.2
8 sat4 streptothricin N-acetyltransferase Sat4 core AMR AMR STREPTOTHRICIN STREPTOTHRICIN WP_063854934.1 NG_048070.1 No AAB53445.1 U01945.1 + 374 916 + 101 643 8056285 sat4A sat4 2024-05-02.2
9 sul2 sulfonamide-resistant dihydropteroate synthase Sul2 core AMR AMR SULFONAMIDE SULFONAMIDE WP_063855540.1 NG_048108.1 No CAC81945.1 AJ289135.1 + 3990 4805 + 101 916 sul2 2024-05-02.2
10 tet(L) tetracycline efflux MFS transporter Tet(L) core AMR AMR TETRACYCLINE TETRACYCLINE WP_063856080.1 NG_048201.1 No AAA22851.1 M11036.1 + 189 1565 + 101 1477 2996983 tetL tet(L) 2024-05-02.2
11 tet(M) tetracycline resistance ribosomal protection protein Tet(M) core AMR AMR TETRACYCLINE TETRACYCLINE WP_063856395.1 NG_048234.1 No ABB70053.1 DQ223247.1 + 1 1920 + 1 1920 16565159 tet(M) 2024-05-02.2
12 tetA(46) tetracycline efflux ABC transporter Tet(46) subunit A core AMR AMR TETRACYCLINE TETRACYCLINE WP_063856469.1 NG_048312.1 No AET10444.1 HQ652506.1 + 374 2098 + 101 1825 22941900 tetA(46) 2024-05-02.2
13 vanG D-alanine--D-serine ligase VanG core AMR AMR GLYCOPEPTIDE VANCOMYCIN WP_063856695.1 NG_048368.1 No AAF71281.1 AF253562.2 + 3715 4764 + 101 1150 11036060 vanA-G,vanG-G vanG 2024-05-02.2
14 blaOXA-484 blaOXA OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-484 core AMR AMR BETA-LACTAM CARBAPENEM WP_063864110.1 NG_049766.1 No ALI16502.1 KR401105.1 + 1 798 + 1 798 blaOXA-484 2024-05-02.2